IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.69   STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.80	0	135..401	+	88	150395229	rpsT	Smed_0001	-	30S ribosomal protein S20
2	 61.62	0	1405..2850	+	481	150395230	dnaA	Smed_0002	-	chromosomal replication initiation protein
3	 60.80	0	3085..3459	+	124	150395231	-	Smed_0003	-	DGPFAETKE family protein
4	 66.04	+1	3456..4739	+	427	150395232	-	Smed_0004	-	RNA polymerase ECF-subfamily sigma factor
5	 59.83	0	5026..5508	+	160	150395233	-	Smed_0005	-	activator of Hsp90 ATPase 1 family protein
6	 63.55	0	5532..6398	+	288	150395234	-	Smed_0006	-	glyoxalase/bleomycin resistance protein/dioxygenase
7	 62.91	0	6437..7582	-	381	150395235	-	Smed_0007	-	coproporphyrinogen III oxidase
8	 64.65	+1	7630..8274	-	214	150395236	-	Smed_0008	-	putative deoxyribonucleotide triphosphate pyrophosphatase
9	 62.32	0	8305..8718	-	137	150395237	-	Smed_0009	-	glyoxalase/bleomycin resistance protein/dioxygenase
10	 61.67	0	8747..9466	-	239	150395238	rph	Smed_0010	-	ribonuclease PH
11	 62.13	0	9671..10750	+	359	150395239	hrcA	Smed_0011	-	heat-inducible transcription repressor
12	 63.16	0	10909..11535	+	208	150395240	-	Smed_0012	-	ribulose-phosphate 3-epimerase
13	 62.15	0	11674..12138	-	154	150395241	-	Smed_0013	-	PTS IIA-like nitrogen-regulatory protein PtsN
14	 56.72	-1	12312..12884	-	190	150395242	-	Smed_0014	-	sigma 54 modulation protein/ribosomal protein S30EA
15	 61.09	0	13139..14680	-	513	150395243	-	Smed_0015	-	RNA polymerase factor sigma-54
16	 62.73	0	14869..15681	-	270	150395244	-	Smed_0016	-	ABC transporter related
17	 60.43	0	15694..16254	-	186	150395245	-	Smed_0017	-	OstA family protein
18	 54.86	-2	16286..16954	-	222	150395246	-	Smed_0018	-	hypothetical protein
19	 57.33	-1	17030..17254	+	74	150395247	-	Smed_0019	-	hypothetical protein
20	 63.23	0	17332..18291	+	319	150395248	-	Smed_0020	-	signal peptide peptidase SppA, 36K type
21	 58.65	-1	18394..18705	+	103	150395249	ihfB	Smed_0021	-	integration host factor subunit beta
22	 62.32	0	18885..19229	+	114	150395250	-	Smed_0022	-	hypothetical protein
23	 61.87	0	19245..19703	-	152	150395251	-	Smed_0023	-	carbon monoxide dehydrogenase subunit G
24	 66.58	+1	19875..21032	+	385	150395252	-	Smed_0024	-	hypothetical protein
25	 62.95	0	21029..21889	+	286	150395253	-	Smed_0025	-	tRNA/rRNA methyltransferase (SpoU)
26	 59.04	0	21889..22386	+	165	150395254	-	Smed_0026	-	lipoprotein signal peptidase
27	 66.49	+1	22461..24680	+	739	150395255	-	Smed_0027	-	integral membrane sensor hybrid histidine kinase
28	 61.17	0	24797..25687	+	296	150395256	-	Smed_0028	-	hypothetical protein
29	 63.04	0	25946..28231	-	761	150395257	-	Smed_0029	-	malic enzyme
30	 65.76	+1	28334..31081	+	915	150395258	-	Smed_0030	-	DNA mismatch repair protein
31	 62.00	0	31282..34131	+	949	150395259	-	Smed_0031	-	PII uridylyl-transferase
32	 64.24	0	34128..35735	+	535	150395260	-	Smed_0032	-	integral membrane protein MviN
33	 63.59	0	35732..36121	+	129	150395261	-	Smed_0033	-	glyoxalase/bleomycin resistance protein/dioxygenase
34	 61.97	0	36212..37276	+	354	150395262	-	Smed_0034	-	tryptophanyl-tRNA synthetase
35	 61.99	0	37329..37820	+	163	150395263	-	Smed_0035	-	UspA domain-containing protein
36	 59.96	0	38024..38590	+	188	150395264	-	Smed_0036	-	scaffold protein Nfu/NifU
37	 65.14	+1	38810..39466	+	218	150395265	-	Smed_0037	-	peptidase M22 glycoprotease
38	 63.89	0	39542..40045	+	167	150395266	-	Smed_0038	-	GCN5-related N-acetyltransferase
39	 65.17	+1	40085..40954	+	289	150395267	-	Smed_0039	-	phospholipid/glycerol acyltransferase
40	 62.86	0	41068..42486	+	472	150395268	-	Smed_0040	-	RNA modification protein
41	 61.55	0	42491..43546	+	351	150395269	-	Smed_0041	-	PhoH family protein
42	 57.99	-1	43610..44116	+	168	150395270	-	Smed_0042	-	hypothetical protein
43	 64.29	0	44129..45304	+	391	150395271	-	Smed_0043	-	CBS domain-containing protein
44	 60.91	0	45522..47153	+	543	150395272	lnt	Smed_0044	-	apolipoprotein N-acyltransferase
45	 57.14	-1	47291..47710	+	139	150395273	-	Smed_0045	-	XRE family transcriptional regulator
46	 60.89	0	48104..49384	+	426	150395274	-	Smed_0046	-	S-adenosylmethionine synthetase
47	 62.52	0	49601..50299	+	232	150395275	trmB	Smed_0047	-	tRNA (guanine-N(7))-methyltransferase
48	 58.14	-1	50450..50707	-	85	150395276	-	Smed_0048	-	hypothetical protein
49	 59.26	0	50758..51189	-	143	150395277	-	Smed_0049	-	heat shock protein Hsp20
50	 62.43	0	51351..52295	+	314	150395278	-	Smed_0050	-	inosine/uridine-preferring nucleoside hydrolase
51	 62.99	0	52377..54767	-	796	150395279	-	Smed_0051	-	methyl-accepting chemotaxis sensory transducer
52	 66.12	+1	55019..55939	-	306	150395280	-	Smed_0052	-	ribokinase-like domain-containing protein
53	 61.92	0	56040..57239	-	399	150395281	-	Smed_0053	-	hypothetical protein
54	 59.24	0	57379..57903	+	174	150395282	def	Smed_0054	-	peptide deformylase
55	 66.45	+1	57979..58914	+	311	150395283	fmt	Smed_0055	-	methionyl-tRNA formyltransferase
56	 64.11	0	58914..59657	+	247	150395284	truA	Smed_0056	-	tRNA pseudouridine synthase A
57	 65.28	+1	59712..61664	-	650	150395285	-	Smed_0057	-	putative Chase2 sensor protein
58	 62.64	0	61664..65260	-	1198	150395286	-	Smed_0058	-	TonB-dependent receptor
59	 56.59	-1	65391..65936	+	181	150395287	-	Smed_0059	-	hypothetical protein
60	 63.32	0	65990..66586	-	198	150395288	-	Smed_0060	-	hypothetical protein
61	 63.31	0	66573..67853	-	426	150395289	-	Smed_0061	-	succinyl-diaminopimelate desuccinylase
62	 63.53	0	67949..71134	-	1061	150395290	-	Smed_0062	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
63	 66.58	+1	71262..72470	-	402	150395291	-	Smed_0063	-	RND family efflux transporter MFP subunit
64	 64.45	0	72537..73349	-	270	150395292	-	Smed_0064	-	alpha/beta hydrolase domain-containing protein
65	 61.61	0	73489..74397	+	302	150395293	-	Smed_0065	-	LysR family transcriptional regulator
66	 66.03	+1	74407..74562	-	51	150395294	-	Smed_0066	-	hypothetical protein
67	 65.12	+1	74665..76545	-	626	150395295	-	Smed_0067	-	DEAD/DEAH box helicase domain-containing protein
68	 62.79	0	76698..77084	-	128	150395296	-	Smed_0068	-	hypothetical protein
69	 64.57	+1	77087..77944	-	285	150395297	dapD	Smed_0069	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
70	 62.33	0	78206..79105	+	299	150395298	-	Smed_0070	-	hypothetical protein
71	 61.06	0	79106..79819	-	237	150395299	-	Smed_0071	-	pyrimidine 5'-nucleotidase
72	 60.77	0	80028..80942	+	304	150395300	-	Smed_0072	-	hypothetical protein
73	 63.97	0	81018..82130	+	370	150395301	-	Smed_0073	-	methylated-DNA--protein-cysteine methyltransferase
74	 64.86	+1	82168..82944	+	258	150395302	-	Smed_0074	-	hypothetical protein
75	 61.26	0	83044..83931	-	295	150395303	-	Smed_0075	-	acetylglutamate kinase
76	 66.81	+1	84285..84995	+	236	150395304	-	Smed_0076	-	hypothetical protein
77	 61.67	0	85094..85633	-	179	150395305	-	Smed_0077	-	hypothetical protein
78	 62.54	0	85776..86429	-	217	150395306	-	Smed_0078	-	GTPase EngB
79	 59.36	0	86577..88370	-	597	150395307	-	Smed_0079	-	putative inner membrane protein translocase component YidC
80	 58.90	0	88367..88765	-	132	150395308	rnpA	Smed_0080	-	ribonuclease P
81	 62.96	0	88787..88921	-	44	150395309	rpmH	Smed_0081	-	50S ribosomal protein L34
82	 61.41	0	89239..91236	+	665	150395310	-	Smed_0082	-	methyl-accepting chemotaxis sensory transducer
83	 64.54	+1	91523..92323	+	266	150395311	-	Smed_0083	-	SNARE associated Golgi protein
84	 64.35	0	92349..93770	+	473	150395312	-	Smed_0084	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
85	 64.10	0	93792..95273	+	493	150395313	-	Smed_0085	-	integral membrane sensor signal transduction histidine kinase
86	 62.56	0	95969..97768	+	599	150395314	-	Smed_0086	-	YadA domain-containing protein
87	 62.15	0	97770..98345	+	191	150395315	-	Smed_0087	-	invasion associated locus B family protein
88	 62.88	0	98359..99045	+	228	150395316	-	Smed_0088	-	putative signal peptide protein
89	 62.42	0	99072..99542	-	156	150395317	-	Smed_0089	-	YbaK/prolyl-tRNA synthetase associated region
90	 62.96	0	99866..100297	-	143	150395318	-	Smed_0090	-	hypothetical protein
91	 65.47	+1	100484..101068	-	194	150395319	-	Smed_0091	-	hypothetical protein
92	 65.26	+1	101142..104843	-	1233	150395320	-	Smed_0092	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
93	 63.86	0	105021..105341	-	106	150395321	-	Smed_0093	-	hypothetical protein
94	 61.96	0	105400..106206	-	268	150395322	-	Smed_0094	-	metallophosphoesterase
95	 64.72	+1	106316..106879	-	187	150395323	-	Smed_0095	-	Sel1 domain-containing protein
96	 66.83	+1	107072..107686	+	204	150395324	-	Smed_0096	-	hypothetical protein
97	 65.46	+1	107735..109642	-	635	150395325	-	Smed_0097	-	putative Chase2 sensor protein
98	 62.70	0	109731..110435	-	234	150395326	-	Smed_0098	-	CRP/FNR family transcriptional regulator
99	 61.42	0	110674..111111	+	145	150395327	-	Smed_0099	-	DoxX family protein
100	 61.07	0	111196..111624	-	142	150395328	-	Smed_0100	-	RbsD or FucU transport
61.69	MEAN

2.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.