IslandPath Analysis: Streptomyces avermitilis MA-4680



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.70   STD DEV: 3.30
Streptomyces avermitilis MA-4680, complete genome - 1..9025608
7580 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.51	-1	1380..1811	-	143	29826541	-	SAV_1	-	hypothetical protein
2	 68.80	0	2466..2699	+	77	29826542	-	SAV_2	-	hypothetical protein
3	 70.33	0	2765..3310	+	181	29826543	-	SAV_3	-	endonuclease VII
4	 70.81	0	3433..3939	-	168	29826544	-	SAV_4	-	hypothetical protein
5	 68.48	0	3994..4932	+	312	29826545	-	SAV_5	-	hypothetical protein
6	 70.59	0	4936..7563	+	875	29826546	-	SAV_6	-	helicase
7	 69.03	0	7554..9626	+	690	29826547	-	SAV_7	-	transposase
8	 68.93	0	9886..10635	-	249	29826548	-	SAV_8	-	hypothetical protein
9	 70.11	0	10632..10805	-	57	29826549	-	SAV_9	-	hypothetical protein
10	 66.17	-1	11101..13497	-	798	29826550	-	SAV_10	-	hypothetical protein
11	 67.60	0	13376..15523	-	715	29826551	-	SAV_11	-	hypothetical protein
12	 67.04	-1	15815..17701	-	628	29826552	-	SAV_12	-	hypothetical protein
13	 68.68	0	17828..18922	+	364	29826553	-	SAV_13	-	hypothetical protein
14	 61.27	-2	19446..20279	+	277	29826554	-	SAV_14	-	hypothetical protein
15	 71.68	0	21562..22080	+	172	29826555	-	SAV_15	-	hypothetical protein
16	 69.13	0	22243..22770	+	175	29826556	-	SAV_16	-	hypothetical protein
17	 67.27	-1	23457..23621	+	54	29826557	-	SAV_17	-	hypothetical protein
18	 68.81	0	23675..24559	+	294	29826558	-	SAV_18	-	IS1647-like transposase
19	 62.80	-2	24570..24983	-	137	29826559	-	SAV_19	-	hypothetical protein
20	 62.10	-2	25166..25690	-	174	29826560	-	SAV_20	-	hypothetical protein
21	 67.95	0	25699..29451	-	1250	29826561	rhsA	SAV_21	-	Rhs protein
22	 69.46	0	29508..30080	-	190	29826562	-	SAV_22	-	hypothetical protein
23	 67.01	-1	30107..30394	-	95	29826563	-	SAV_23	-	hypothetical protein
24	 68.49	0	30394..31323	-	309	29826564	-	SAV_24	-	hypothetical protein
25	 66.39	-1	32197..32559	-	120	29826565	-	SAV_25	-	hypothetical protein
26	 64.40	-1	32552..33124	-	190	29826566	sig1	SAV_26	-	ECF subfamily RNA polymerase sigma factor
27	 68.04	0	33121..33411	-	96	29826567	-	SAV_27	-	hypothetical protein
28	 72.02	0	34056..35792	+	578	29826568	-	SAV_28	-	two-component system sensor kinase
29	 70.76	0	37315..37656	+	113	29826569	-	SAV_29	-	ParR family transcriptional regulator
30	 70.53	0	37653..38609	+	318	29826570	-	SAV_30	-	hypothetical protein
31	 70.16	0	38623..39624	+	333	29826571	-	SAV_31	-	prepilin peptidase-like protein
32	 68.66	0	41010..41612	+	200	29826572	-	SAV_32	-	hypothetical protein
33	 63.04	-2	41665..41967	-	100	29826573	-	SAV_33	-	hypothetical protein
34	 65.88	-1	42010..44046	+	678	29826574	-	SAV_34	-	hypothetical protein
35	 68.31	0	44107..44958	-	283	29826575	-	SAV_35	-	hypothetical protein
36	 67.40	-1	45160..45432	-	90	29826576	-	SAV_36	-	hypothetical protein
37	 68.48	0	45819..47141	-	440	29826577	-	SAV_37	-	hypothetical protein
38	 68.47	0	47239..48180	-	313	29826578	-	SAV_38	-	hydrolase
39	 72.51	0	49166..49456	+	96	29826579	-	SAV_39	-	terminal protein Tpg-like protein
40	 68.83	0	49694..50434	-	246	29826580	-	SAV_40	-	hypothetical protein
41	 62.73	-2	50521..50901	-	126	29826581	-	SAV_41	-	hypothetical protein
42	 74.14	+1	51232..52623	+	463	29826582	-	SAV_42	-	hypothetical protein
43	 73.54	0	53113..53505	+	130	29826583	-	SAV_43	-	Tn5741 family transposase
44	 68.46	0	54215..55330	+	371	29826584	-	SAV_44	-	unsaturated glucuronyl hydrolase
45	 69.07	0	55687..56061	-	124	29826585	-	SAV_45	-	IS5 family transposase
46	 68.21	0	56052..56441	-	129	29826586	-	SAV_46	-	IS1647-like transposase
47	 68.01	0	56620..57810	+	396	29826587	-	SAV_47	-	IS200-like transposase
48	 68.95	0	58168..58824	-	218	29826588	-	SAV_48	-	hypothetical protein
49	 67.01	-1	58919..59212	+	97	29826589	-	SAV_49	-	hypothetical protein
50	 74.65	+1	59260..61488	-	742	29826590	-	SAV_50	-	hypothetical protein
51	 67.06	-1	62242..62751	-	169	29826591	-	SAV_51	-	acetyltransferase
52	 63.49	-2	62965..63342	-	125	29826592	-	SAV_52	-	hypothetical protein
53	 66.78	-1	63529..64401	+	290	29826593	-	SAV_53	-	transcriptional regulatory protein
54	 78.70	+2	64481..64588	-	35	29826594	-	SAV_54	-	hypothetical protein
55	 66.43	-1	64632..65045	-	137	29826595	-	SAV_55	-	hypothetical protein
56	 70.49	0	65216..65398	-	60	29826596	-	SAV_56	-	hypothetical protein
57	 70.17	0	65536..66591	-	351	29826597	-	SAV_57	-	hypothetical protein
58	 70.03	0	66803..67546	-	247	29826598	-	SAV_58	-	hypothetical protein
59	 67.42	0	69136..69402	+	88	29826599	-	SAV_59	-	hypothetical protein
60	 67.44	0	70102..70617	-	171	29826600	-	SAV_60	-	hypothetical protein
61	 66.50	-1	70718..71920	-	400	29826601	-	SAV_61	-	IS200-like transposase
62	 68.90	0	72189..72680	+	163	29826602	-	SAV_62	-	transmembrane transport protein
63	 69.82	0	72680..72901	+	73	29826603	-	SAV_63	-	transcriptional regulatory protein
64	 66.82	-1	73063..73698	+	211	29826604	-	SAV_64	-	hypothetical protein
65	 72.10	0	74098..74520	+	140	29826605	-	SAV_65	-	hypothetical protein
66	 71.13	0	74429..74899	-	156	29826606	-	SAV_66	-	IS200-like transposase
67	 69.45	0	75600..76676	+	358	29826607	-	SAV_67	-	regulatory protein
68	 74.60	+1	77069..78430	+	453	29826608	-	SAV_68	-	hypothetical protein
69	 69.17	0	78733..78972	+	79	29826609	-	SAV_69	-	hypothetical protein
70	 73.26	0	79005..79262	-	85	29826610	-	SAV_70	-	hypothetical protein
71	 66.43	-1	79425..79850	+	141	29826611	-	SAV_71	-	putavie cyclase/dehydrase
72	 75.00	+1	80560..82215	-	551	29826612	-	SAV_72	-	two-component system sensor kinase
73	 72.42	0	82208..82954	-	248	29826613	-	SAV_73	-	two-component system response regulator
74	 74.25	+1	83059..84600	+	513	29826614	-	SAV_74	-	hypothetical protein
75	 67.18	-1	85042..85431	+	129	29826615	-	SAV_75	-	endoribonuclease L-PSP
76	 72.02	0	86073..87080	+	335	29826616	tpc1	SAV_76	-	terpene cyclase
77	 71.21	0	87168..87629	-	153	29826617	-	SAV_77	-	hypothetical protein
78	 64.17	-1	87716..88276	-	186	29826618	-	SAV_78	-	hypothetical protein
79	 66.37	-1	88693..89706	-	337	57833847	-	SAV_79	-	hypothetical protein
80	 72.62	0	89844..90179	-	111	29826620	-	SAV_80	-	rRNA methyltransferase
81	 70.82	0	90422..91192	-	256	29826621	-	SAV_81	-	oligosaccharide deacetylase
82	 70.79	0	91736..92317	-	193	29826622	-	SAV_82	-	TetR family transcriptional regulator
83	 76.71	+1	92523..92741	+	72	29826623	-	SAV_83	-	hypothetical protein
84	 71.89	0	92939..94183	-	414	29826624	-	SAV_84	-	hypothetical protein
85	 75.39	+1	94242..95009	+	255	29826625	-	SAV_85	-	MerR family transcriptional regulator
86	 72.79	0	95110..96105	-	331	29826626	-	SAV_86	-	erythropoiesis-stimulating protein
87	 72.97	0	96235..96567	+	110	29826627	-	SAV_87	-	hypothetical protein
88	 70.14	0	99274..100050	-	258	29826628	-	SAV_88	-	hypothetical protein
89	 72.96	0	100279..100866	-	195	29826629	-	SAV_89	-	hypothetical protein
90	 71.57	0	100955..101362	+	135	29826630	-	SAV_90	-	hydrolase
91	 73.15	0	101447..101893	+	148	29826631	-	SAV_91	-	hypothetical protein
92	 74.80	+1	102549..103163	+	204	29826632	-	SAV_92	-	lipoprotein
93	 69.11	0	103255..103746	+	163	29826633	sig2	SAV_93	-	ECF subfamily RNA polymerase sigma factor
94	 78.12	+2	103709..104197	+	162	29826634	-	SAV_94	-	hypothetical protein
95	 67.45	0	104696..106234	+	512	29826635	-	SAV_95	-	secreted protein
96	 74.78	+1	106628..107440	+	270	29826636	-	SAV_96	-	hypothetical protein
97	 76.54	+1	107491..108027	-	178	29826637	-	SAV_97	-	hypothetical protein
98	 68.52	0	108349..110238	-	629	29826638	-	SAV_98	-	glycosyl hydrolase
99	 73.69	0	110830..113364	+	844	29826639	-	SAV_99	-	integral membrane protein
100	 73.11	0	113361..114866	+	501	29826640	pks11-1	SAV_100	-	polyketide synthase
70.70	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.