IslandPath Analysis: Bradyrhizobium japonicum USDA 110



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.12   STD DEV: 3.75
Bradyrhizobium japonicum USDA 110, complete genome - 1..9105828
8317 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.74	-2	102..428	+	108	27375112	-	blr0001	-	hypothetical protein
2	 57.59	-1	484..1023	+	179	27375113	-	blr0002	-	hypothetical protein
3	 60.27	-1	3089..3682	+	197	27375114	-	blr0003	-	hypothetical protein
4	 63.40	0	4239..4391	+	50	27375115	-	bsr0004	-	hypothetical protein
5	 57.41	-1	4427..4750	-	107	27375116	-	bll0005	-	hypothetical protein
6	 62.14	0	4972..6054	-	360	27375117	nrdF	bll0006	-	ribonucleotide-diphosphate reductase subunit beta
7	 64.00	0	6036..8207	-	723	27375118	-	bll0007	-	ribonucleotide-diphosphate reductase subunit alpha
8	 60.52	0	8380..8688	-	102	27375119	-	bll0008	-	hypothetical protein
9	 57.10	-1	8962..9714	-	250	27375120	-	bll0009	-	putative acetyltransferase
10	 53.13	-2	10345..10743	-	132	27375121	-	bll0010	-	hypothetical protein
11	 65.38	0	10872..11492	-	206	27375122	-	bll0011	-	hypothetical protein
12	 60.97	0	11482..11955	+	157	27375123	-	blr0012	-	hypothetical protein
13	 61.80	0	12282..12815	+	177	27375124	-	blr0013	-	putative transposase
14	 65.62	0	13421..13804	-	127	27375125	-	bll0014	-	hypothetical protein
15	 64.36	0	13680..14069	-	129	27375126	-	bll0015	-	putative transposase
16	 64.77	0	14066..14329	-	87	27375127	-	bsl0016	-	hypothetical protein
17	 57.78	-1	14685..15044	+	119	27375128	-	blr0017	-	putative transposase
18	 61.71	0	15041..15868	+	275	27375129	-	blr0018	-	RSbeta~putative transposase
19	 58.48	-1	16189..16518	+	109	27375130	-	blr0019	-	hypothetical protein
20	 61.15	0	17139..18371	-	410	27375131	-	bll0020	-	hypothetical protein
21	 60.12	-1	18497..20497	-	666	27375132	-	bll0021	-	hypothetical protein
22	 65.29	0	21525..21815	+	96	27375133	-	bsr0022	-	hypothetical protein
23	 58.47	-1	21972..23081	+	369	27375134	-	blr0023	-	putative transposase
24	 64.02	0	23634..24011	+	125	27375135	-	blr0024	-	hypothetical protein
25	 55.14	-2	24726..26486	-	586	27375136	-	bll0025	-	67 kDa Myosin-crossreactive streptococcal antigen-like protein
26	 60.08	-1	26532..27290	-	252	27375137	-	bll0026	-	dehydrogenase
27	 56.32	-2	27698..27958	+	86	27375138	-	bsr0027	-	hypothetical protein
28	 54.45	-2	28473..29315	+	280	27375139	-	blr0028	-	hypothetical protein
29	 54.86	-2	29412..29699	+	95	27375140	-	bsr0029	-	hypothetical protein
30	 55.28	-2	29792..31372	+	526	27375141	-	blr0030	-	recombinase
31	 59.52	-1	31338..31715	-	125	27375142	-	bll0031	-	hypothetical protein
32	 63.44	0	31759..31944	-	61	27375143	-	bsl0032	-	hypothetical protein
33	 62.39	0	32239..32472	+	77	27375144	-	bsr0033	-	hypothetical protein
34	 63.38	0	32885..33310	+	141	27375145	-	blr0034	-	putative transposase
35	 60.22	-1	33307..33663	+	118	27375146	-	blr0035	-	hypothetical protein
36	 52.63	-2	33782..33952	+	56	27375147	-	bsr0036	-	hypothetical protein
37	 55.18	-2	33965..34321	+	118	27375148	-	blr0037	-	hypothetical protein
38	 54.96	-2	34579..34860	+	93	27375149	-	bsr0038	-	transcriptional regulator
39	 62.08	0	35259..35498	+	79	27375150	-	bsr0039	-	hypothetical protein
40	 59.26	-1	35827..36150	-	107	27375151	-	bll0040	-	hypothetical protein
41	 56.32	-2	36259..36432	-	57	27375152	-	bsl0041	-	hypothetical protein
42	 61.45	0	36857..37297	-	146	27375153	-	bll0042	-	hypothetical protein
43	 63.61	0	37305..39332	-	675	27375154	traG	bll0043	-	conjugal transfer protein
44	 66.56	0	39329..41203	-	624	27375155	-	bll0044	-	hypothetical protein
45	 66.34	0	41537..42445	-	302	27375156	-	bll0045	-	transglycosylase
46	 64.88	0	42450..42785	-	111	27375157	-	bll0046	-	hypothetical protein
47	 66.48	0	42820..43365	-	181	27375158	traF	bll0047	-	conjugal transfer protein precursor
48	 66.09	0	43362..43880	-	172	27375159	-	bll0048	-	hypothetical protein
49	 65.54	0	43867..44133	-	88	27375160	-	bsl0049	-	hypothetical protein
50	 68.39	+1	44130..44768	-	212	27375161	-	bll0050	-	putative partition protein
51	 62.52	0	44765..46042	-	425	27375162	repA	bll0051	-	replication protein A
52	 65.86	0	45894..46265	-	123	27375163	-	bll0052	-	hypothetical protein
53	 65.80	0	46349..47044	-	231	27375164	-	bll0053	-	hypothetical protein
54	 59.85	-1	47255..47518	-	87	27375165	-	bsl0054	-	hypothetical protein
55	 58.33	-1	47732..47983	+	83	27375166	-	bsr0055	-	transcriptional regulator
56	 59.85	-1	48147..48557	+	136	27375167	-	blr0056	-	hypothetical protein
57	 63.09	0	48674..49036	-	120	27375168	-	bll0057	-	hypothetical protein
58	 56.43	-2	49708..50049	+	113	27375169	-	blr0058	-	hypothetical protein
59	 53.42	-2	50081..50314	-	77	27375170	cspA	bsl0059	-	cold shock protein
60	 58.66	-1	50722..51495	+	257	27375171	-	blr0060	-	hypothetical protein
61	 64.00	0	51544..52068	-	174	27375172	-	bll0061	-	hypothetical protein
62	 53.36	-2	52262..52930	+	222	27375173	atc1	blr0062	-	Atc1 protein
63	 63.12	0	53006..53935	-	309	27375174	-	bll0063	-	hypothetical protein
64	 64.97	0	54262..55320	-	352	27375175	-	bll0064	-	hypothetical protein
65	 65.17	0	55377..57515	-	712	27375176	-	bll0065	-	putative DNA-binding protein
66	 63.53	0	57643..58884	-	413	27375177	-	bll0066	-	hypothetical protein
67	 55.56	-2	59742..59957	+	71	27375178	-	bsr0067	-	hypothetical protein
68	 59.84	-1	60225..61631	-	468	27375179	-	bll0068	-	exonuclease I
69	 60.15	-1	61639..62160	-	173	27375180	-	bll0069	-	hypothetical protein
70	 61.11	0	62157..62552	-	131	27375181	-	bll0070	-	hypothetical protein
71	 64.41	0	62687..62908	+	73	27375182	-	bsr0071	-	hypothetical protein
72	 65.15	0	62984..64234	+	416	27375183	-	blr0072	-	hypothetical protein
73	 62.72	0	64235..64690	+	151	27375184	-	blr0073	-	hypothetical protein
74	 61.65	0	64674..65810	+	378	27375185	-	blr0074	-	hypothetical protein
75	 48.47	-2	66173..66727	-	184	27375186	-	bll0075	-	hypothetical protein
76	 53.37	-2	66843..68654	-	603	27375187	-	bll0076	-	hypothetical protein
77	 54.60	-2	68941..70365	+	474	27375188	-	blr0077	-	hypothetical protein
78	 59.88	-1	70615..70776	+	53	27375189	-	bsr0078	-	hypothetical protein
79	 58.60	-1	70897..71925	-	342	27375190	-	bll0079	-	hypothetical protein
80	 60.79	0	72470..74734	+	754	27375191	-	blr0080	-	hypothetical protein
81	 66.44	0	74948..75823	-	291	27375192	-	bll0081	-	hypothetical protein
82	 69.16	+1	75915..76235	-	106	27375193	-	bll0082	-	hypothetical protein
83	 67.38	0	76401..76964	-	187	27375194	-	bll0083	-	hypothetical protein
84	 65.30	0	77065..78453	+	462	27375195	-	blr0084	-	hypothetical protein
85	 69.22	+1	78511..79803	-	430	27375196	-	bll0085	-	hypothetical protein
86	 64.46	0	79931..80338	-	135	27375197	-	bll0086	-	hypothetical protein
87	 64.21	0	80457..81149	-	230	27375198	-	bll0087	-	hypothetical protein
88	 65.15	0	81149..82138	-	329	27375199	-	bll0088	-	glycerate dehydrogenase
89	 64.59	0	82138..82956	-	272	27375200	-	bll0089	-	ABC transporter permease protein
90	 68.01	+1	82953..83768	-	271	27375201	-	bll0090	-	ABC transporter ATP-binding protein
91	 60.51	0	83779..84801	-	340	27375202	-	bll0091	-	ABC transporter substrate-binding protein
92	 66.67	0	84955..85761	+	268	27375203	-	blr0092	-	hypothetical protein
93	 65.94	0	85889..86164	+	91	27375204	-	bsr0093	-	hypothetical protein
94	 63.22	0	86228..87328	+	366	27375205	-	blr0094	-	hypothetical protein
95	 64.99	0	87667..89694	+	675	27375206	-	blr0095	-	hypothetical protein
96	 69.51	+1	89896..91971	-	691	27375207	-	bll0096	-	putative methyl accepting chemotaxis protein
97	 67.36	0	92215..93513	+	432	27375208	-	blr0097	-	hypothetical protein
98	 63.33	0	93761..94000	-	79	27375209	-	bsl0098	-	hypothetical protein
99	 65.50	0	94103..95728	-	541	27375210	glt	bll0099	-	putative glutamate synthase
100	 61.99	0	96219..97073	-	284	27375211	-	bll0100	-	ferredoxin NADP+ reductase
64.12	MEAN

3.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.