IslandPath Analysis: Staphylococcus aureus subsp. aureus MRSA252



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.95   STD DEV: 3.41
Staphylococcus aureus subsp. aureus MRSA252, complete genome - 1..2902619
2656 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.89	0	517..1878	+	453	49482254	dnaA	SAR0001	-	chromosomal replication initiation protein
2	 32.54	0	2156..3289	+	377	49482255	dnaN	SAR0002	-	DNA polymerase III subunit beta
3	 35.37	0	3670..3915	+	81	49482256	-	SAR0003	-	hypothetical protein
4	 33.69	0	3912..5024	+	370	49482257	recF	SAR0004	-	recombination protein F
5	 37.06	+1	5037..6968	+	643	49482258	gyrB	SAR0005	-	DNA gyrase subunit B
6	 36.87	+1	7005..9665	+	886	49482259	gyrA	SAR0006	-	DNA gyrase subunit A
7	 36.82	+1	9753..10583	-	276	49482260	-	SAR0007	-	hypothetical protein
8	 36.96	+1	10891..12405	+	504	49482261	hutH	SAR0008	-	histidine ammonia-lyase
9	 34.42	0	12783..14069	+	428	49482262	serS	SAR0009	-	seryl-tRNA synthetase
10	 36.35	0	14713..15408	+	231	49482263	-	SAR0010	-	hypothetical protein
11	 34.55	0	15405..15734	+	109	49482264	-	SAR0011	-	hypothetical protein
12	 36.12	0	16096..17064	+	322	49482265	-	SAR0012	-	putative hydrolase
13	 32.52	0	17309..18295	+	328	49482266	-	SAR0013	-	hypothetical protein
14	 35.72	0	18310..20277	+	655	49482267	-	SAR0014	-	hypothetical protein
15	 31.77	0	20274..20720	+	148	49482268	rplI	SAR0015	-	50S ribosomal protein L9
16	 38.12	+1	20752..22152	+	466	49482269	dnaC	SAR0016	-	replicative DNA helicase
17	 36.37	+1	22430..23713	+	427	49482270	purA	SAR0017	-	adenylosuccinate synthetase
18	 36.44	+1	24897..25604	+	235	49482271	yycF	SAR0018	-	response regulator protein
19	 34.87	0	25617..27443	+	608	49482272	yycG	SAR0019	-	sensor kinase protein
20	 35.21	0	27436..28770	+	444	49482273	yycH	SAR0020	-	hypothetical protein
21	 32.57	0	28771..29559	+	262	49482274	yycI	SAR0021	-	hypothetical protein
22	 36.08	0	29947..30747	+	266	49482275	yycJ	SAR0022	-	metallo-beta-lactamase superfamily protein
23	 38.54	+1	30932..33292	+	786	49482276	sasH	SAR0023	-	putative 5'-nucleotidase
24	 39.38	+1	33660..34139	+	159	49482277	-	SAR0024	-	hypothetical protein
25	 28.32	-1	34422..35717	+	431	49482278	-	SAR0025	-	hypothetical protein
26	 24.58	-2	36132..36371	+	79	49482279	-	SAR0026	-	hypothetical protein
27	 34.37	0	36403..37077	-	224	49482280	-	SAR0027	-	putative transposase
28	 29.94	0	38197..38373	-	58	49482281	-	SAR0030	-	hypothetical protein
29	 33.73	0	38396..39658	-	420	49482282	pre	SAR0031	-	plasmid recombination enzyme
30	 46.10	+2	39767..39907	+	46	49482283	-	SAR0031a	-	hypothetical protein
31	 36.78	+1	39973..40146	+	57	49482284	-	SAR0031b	-	hypothetical protein
32	 40.49	+2	40165..40569	-	134	49482285	ble	SAR0032	-	bleomycin resistance protein
33	 42.28	+2	40786..41556	-	256	49482286	knt	SAR0033	-	kanamycin nucleotidyltransferase
34	 34.37	0	41749..42423	-	224	49482287	-	SAR0034	-	putative transposase
35	 35.71	0	42946..43155	+	69	49482288	-	SAR0036	-	hypothetical protein
36	 33.47	0	43605..44348	+	247	49482289	ugpQ	SAR0037	-	glycerophosphoryl diester phosphodiesterase
37	 29.14	-1	44445..44873	+	142	49482290	-	SAR0038	-	hypothetical protein
38	 30.59	0	44919..46925	-	668	49482291	mecA	SAR0039	-	penicillin-binding protein 2 prime
39	 28.67	-1	47025..48782	+	585	49482292	mecR1	SAR0040	-	methicillin resistance protein MecR1
40	 26.67	-1	48782..49126	+	114	49482293	mecI	SAR0041	-	methicillin resistance regulatory protein MecI
41	 25.00	-2	49263..49466	+	67	49482294	-	SAR0042	-	hypothetical protein
42	 32.30	0	52251..53315	-	354	49482295	-	SAR0046	-	hypothetical protein
43	 24.72	-2	53445..53711	+	88	49482296	-	SAR0047	-	hypothetical protein
44	 34.39	0	54694..55356	-	220	49482297	-	SAR0049	-	hypothetical protein
45	 32.51	0	55890..56621	+	243	49482298	ermA1	SAR0050	-	rRNA adenine N-6-methyltransferase 1
46	 36.40	+1	56747..57529	-	260	49482299	spc1	SAR0051	-	streptomycin 3''-adenylyltransferase 1
47	 29.89	0	57680..58057	-	125	49482300	tnpC1	SAR0052	-	transposase C 1
48	 33.86	0	58064..59956	-	630	49482301	tnpB1	SAR0053	-	transposase B 1
49	 32.14	0	59953..61038	-	361	49482302	tnpA1	SAR0054	-	transposase A 1
50	 36.29	0	61495..62001	-	168	49482303	-	SAR0056	-	hypothetical protein
51	 32.05	0	62019..62330	-	103	49482304	-	SAR0057	-	hypothetical protein
52	 34.76	0	62417..62767	-	116	49482305	-	SAR0058	-	hypothetical protein
53	 35.05	0	63285..64913	-	542	49482306	ccrB	SAR0059	-	site-specific recombinase
54	 34.37	0	64935..66284	-	449	49482307	ccrA	SAR0060	-	site-specific recombinase
55	 34.06	0	66518..68311	-	597	49482308	-	SAR0061	-	hypothetical protein
56	 34.68	0	68311..68607	-	98	49482309	-	SAR0062	-	hypothetical protein
57	 25.12	-2	68800..69846	-	348	49482310	-	SAR0063	-	hypothetical protein
58	 30.79	0	70924..71238	-	104	49482311	-	SAR0066	-	putative transposase
59	 37.36	+1	73397..74092	-	231	49482312	kdpE	SAR0068	-	response regulator protein
60	 36.57	+1	74067..76787	-	906	49482313	-	SAR0069	-	sensor kinase protein
61	 36.79	+1	77004..78680	+	558	49482314	-	SAR0070	-	potassium-transporting ATPase subunit A
62	 39.76	+1	78699..80720	+	673	49482315	-	SAR0071	-	potassium-transporting ATPase B chain
63	 33.56	0	81837..82706	-	289	49482316	-	SAR0074	-	hypothetical protein
64	 36.68	+1	82716..83612	-	298	49482317	-	SAR0075	-	hypothetical protein
65	 40.48	+2	83654..83779	+	41	49482318	-	SAR0075a	-	hypothetical protein
66	 26.94	-1	83812..84249	-	145	49482319	-	SAR0076	-	hypothetical protein
67	 30.56	0	84354..84641	-	95	49482320	-	SAR0077	-	hypothetical protein
68	 29.67	0	84731..85357	-	208	49482321	-	SAR0078	-	hypothetical protein
69	 31.21	0	85472..86980	+	502	49482322	-	SAR0079	-	putative protein kinase
70	 24.28	-2	87145..89265	+	706	49482323	-	SAR0080	-	hypothetical protein
71	 32.00	0	89496..89795	+	99	49482324	-	SAR0081	-	transposase
72	 29.12	-1	89837..90643	+	268	49482325	-	SAR0082	-	transposase
73	 29.46	-1	90831..91346	+	171	49482326	-	SAR0084	-	hypothetical protein
74	 33.23	0	91351..92298	-	315	49482327	-	SAR0085	-	putative transposase
75	 24.80	-2	92484..92858	+	124	49482328	-	SAR0086	-	hypothetical protein
76	 27.93	-1	93145..94848	+	567	49482329	-	SAR0087	-	putative restriction enzyme
77	 24.59	-2	94841..95881	+	346	49482330	-	SAR0088	-	5-methylcytosine-specific restriction enzyme subunit McrC
78	 25.25	-2	96110..96208	+	32	49482331	-	SAR0089	-	hypothetical protein
79	 25.79	-2	96312..96470	+	52	49482332	-	SAR0090	-	hypothetical protein
80	 25.00	-2	96778..96909	-	43	49482333	-	SAR0091	-	putative insertion sequence protein
81	 35.29	0	97309..98280	-	323	49482334	-	SAR0092	-	putative hydratase
82	 30.38	0	98333..98704	-	123	49482335	-	SAR0093	-	hypothetical protein
83	 35.32	0	98724..100085	-	453	49482336	-	SAR0094	-	putative transporter protein
84	 27.60	-1	101081..101656	+	191	49482337	-	SAR0097	-	putative DNA-binding protein
85	 28.06	-1	102126..102599	+	157	49482338	-	SAR0098	-	acetyltransferase (GNAT) family protein
86	 38.70	+1	102706..103692	-	328	49482339	-	SAR0099	-	hypothetical protein
87	 23.46	-2	104041..104202	+	53	49482340	-	SAR0100	-	hypothetical protein
88	 30.64	0	104251..104547	+	98	49482341	-	SAR0101	-	hypothetical protein
89	 29.58	0	104746..105357	+	203	49482342	-	SAR0102	-	hypothetical protein
90	 31.18	0	105625..108777	+	1050	49482343	-	SAR0103	-	hypothetical protein
91	 31.26	0	108860..109342	+	160	49482344	-	SAR0104	-	hypothetical protein
92	 34.04	0	109547..110533	+	328	49482345	plc	SAR0105	-	1-phosphatidylinositol phosphodiesterase
93	 30.48	0	110754..111524	+	256	49482346	-	SAR0106	-	putative lipoprotein
94	 33.51	0	111618..113855	+	745	49482347	-	SAR0107	-	putative regulatory protein
95	 37.49	+1	114006..115184	+	392	49482348	-	SAR0108	-	putative peptidase
96	 36.57	+1	115186..116574	+	462	49482349	-	SAR0109	-	putative transporter protein
97	 35.79	0	117060..118727	-	555	49482350	-	SAR0110	-	putative Na+/Pi-cotransporter protein
98	 35.42	0	119046..120821	-	591	49482351	-	SAR0111	-	putative myosin-crossreactive antigen
99	 29.75	0	121172..121645	+	157	49482352	-	SAR0112	-	hypothetical protein
100	 34.71	0	121907..123499	+	530	49482353	lldP1	SAR0113	-	L-lactate permease 1
32.95	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.