IslandPath Analysis: Pectobacterium atrosepticum SCRI1043



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.14   STD DEV: 5.41
Erwinia carotovora subsp. atroseptica SCRI1043, complete genome - 1..5064019
4472 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.10	0	32..475	-	147	50118966	mioC	ECA0001	-	flavodoxin
2	 47.84	0	565..1026	-	153	50118967	asnC	ECA0002	-	DNA-binding transcriptional regulator AsnC
3	 52.97	0	1179..2171	+	330	50118968	asnA	ECA0003	-	asparagine synthetase AsnA
4	 53.48	0	2168..3646	-	492	50118969	yieM	ECA0004	-	hypothetical protein
5	 52.47	0	3652..5151	-	499	50118970	-	ECA0005	-	regulatory ATPase RavA
6	 52.81	0	5629..7497	+	622	50118971	trkD	ECA0006	-	potassium transport protein Kup
7	 52.81	0	7668..9017	-	449	50118972	qseC	ECA0007	-	sensor protein QseC
8	 54.75	0	9014..9676	-	220	50118973	qseB	ECA0008	-	two-component system response regulator.
9	 48.23	0	9921..10316	+	131	50118974	-	ECA0009	-	hypothetical protein
10	 47.38	0	10521..10940	+	139	50118975	rbsD	ECA0010	-	D-ribose pyranase
11	 52.06	0	10948..12453	+	501	50118976	rbsA	ECA0011	-	D-ribose transporter ATP binding protein
12	 52.63	0	12461..13429	+	322	50118977	rbsC	ECA0012	-	ribose ABC transporter permease protein
13	 50.79	0	13455..14342	+	295	50118978	rbsB	ECA0013	-	D-ribose transporter subunit RbsB
14	 52.21	0	14538..15464	+	308	50118979	rbsK	ECA0014	-	ribokinase
15	 49.20	0	15468..16463	+	331	50118980	rbsR	ECA0015	-	transcriptional repressor RbsR
16	 44.25	-1	22163..22684	-	173	50118981	mobB	ECA0016	-	molybdopterin-guanine dinucleotide biosynthesis protein B
17	 46.87	0	22674..23264	-	196	50118982	mobA	ECA0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A
18	 41.85	-1	23466..23735	+	89	50118983	-	ECA0018	-	hypothetical protein
19	 47.29	0	23805..24800	+	331	50118984	-	ECA0019	-	serine/threonine protein kinase
20	 45.03	-1	24825..25448	+	207	50118985	dsbA	ECA0020	-	periplasmic protein disulfide isomerase I
21	 50.00	0	25826..28615	+	929	50118986	polA	ECA0021	-	DNA polymerase I
22	 49.69	0	29034..29669	-	211	50118987	engB	ECA0022	-	GTPase EngB
23	 48.29	0	29873..30427	+	184	50118988	-	ECA0024	-	hypothetical protein
24	 50.22	0	30749..32122	+	457	50118989	hemN	ECA0026	-	coproporphyrinogen III oxidase
25	 55.20	0	32447..33859	-	470	50118990	glnG	ECA0027	-	nitrogen regulation protein NR(I)
26	 53.90	0	33868..34917	-	349	50118991	glnL	ECA0028	-	nitrogen regulation protein NR(II)
27	 51.91	0	35258..36667	-	469	50118992	glnA	ECA0029	-	glutamine synthetase
28	 50.66	0	37037..38860	+	607	50118993	typA	ECA0030	-	GTP-binding regulatory protein
29	 50.98	0	39022..39633	+	203	50118994	-	ECA0031	-	phosphatase
30	 51.60	0	39698..40135	+	145	50118995	dtd	ECA0032	-	D-tyrosyl-tRNA deacylase
31	 52.58	0	40213..41199	+	328	50118996	-	ECA0033	-	GNAT family acetyltransferase
32	 52.54	0	41509..43200	-	563	50118997	-	ECA0034	-	hypothetical protein
33	 54.28	0	43358..44746	-	462	50118998	-	ECA0035	-	putative purine permease
34	 56.15	0	45107..47188	-	693	50118999	recG	ECA0036	-	ATP-dependent DNA helicase RecG
35	 53.68	0	47188..47880	-	230	50119000	trmH	ECA0037	-	tRNA guanosine-2'-O-methyltransferase
36	 51.67	0	47886..49985	-	699	50119001	spoT	ECA0038	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
37	 52.90	0	50004..50279	-	91	50119002	rpoZ	ECA0039	-	DNA-directed RNA polymerase subunit omega
38	 50.16	0	50333..50956	-	207	50119003	gmk	ECA0040	-	guanylate kinase
39	 47.37	0	50958..51185	+	75	50119004	-	ECA0041	-	hypothetical protein
40	 50.77	0	51400..53091	+	563	50119005	ligB	ECA0043	-	NAD-dependent DNA ligase LigB
41	 46.38	0	53350..55035	+	561	50119006	-	ECA0044	-	phosphoethanolamine transferase
42	 41.71	-1	55765..56313	+	182	50119007	-	ECA0045	-	putative virulence-associated outer membrane protein
43	 47.08	0	56357..57964	-	535	50119008	-	ECA0046	-	putative signaling membrane protein
44	 54.92	0	58054..59253	-	399	50119009	-	ECA0047	-	hypothetical protein
45	 52.92	0	59530..61035	+	501	50119010	pitA	ECA0048	-	low-affinity inorganic phosphate transporter
46	 47.62	0	61234..61569	-	111	50119011	uspB	ECA0049	-	universal stress protein UspB
47	 47.26	0	62108..62545	+	145	50119012	uspA	ECA0050	-	universal stress protein A
48	 56.40	0	62838..64181	+	447	50119013	gdhA	ECA0051	-	glutamate dehydrogenase
49	 55.94	0	64337..65650	+	437	50119014	-	ECA0052	-	hypothetical protein
50	 51.74	0	65657..67552	-	631	50119015	-	ECA0053	-	putative phosphodiesterase
51	 58.10	+1	67694..68440	-	248	50119016	-	ECA0054	-	putative methyltransferase
52	 56.58	+1	68437..70479	-	680	50119017	prlC	ECA0055	-	oligopeptidase A
53	 55.10	0	70800..73349	+	849	50119018	-	ECA0056	-	putative TonB-dependent heme receptor
54	 53.41	0	73530..74042	+	170	50119019	-	ECA0057	-	ECF family RNA polymerase sigma factor
55	 57.68	+1	74039..75028	+	329	50119020	-	ECA0058	-	transmembrane sensor
56	 58.52	+1	75230..76051	+	273	50119021	-	ECA0059	-	TonB-like protein
57	 56.46	0	76062..76355	-	97	50119022	-	ECA0060	-	hypothetical protein
58	 54.69	0	76671..77513	+	280	50119023	-	ECA0061	-	hypothetical protein
59	 54.77	0	77642..78994	+	450	50119024	gor	ECA0062	-	glutathione reductase
60	 43.40	-1	79098..79385	-	95	50119025	-	ECA0063	-	hypothetical protein
61	 48.02	0	79382..79633	-	83	50119026	-	ECA0064	-	hypothetical protein
62	 56.18	0	79889..80794	+	301	50119027	-	ECA0065	-	hypothetical protein
63	 53.31	0	80829..81584	-	251	50119028	dsbG	ECA0066	-	disulfide isomerase/thiol-disulfide oxidase
64	 54.33	0	81805..82428	+	207	50119029	-	ECA0067	-	amino acid transporter LysE
65	 54.30	0	82475..83347	-	290	50119030	-	ECA0068	-	LysR family transcriptional regulator
66	 48.24	0	83450..83959	+	169	50119031	padC	ECA0069	-	phenolic acid decarboxylase
67	 58.05	+1	84016..85152	-	378	50119032	-	ECA0070	-	hypothetical protein
68	 59.52	+1	85149..86183	-	344	50119033	-	ECA0071	-	putative monooxygenase
69	 58.07	+1	86185..87882	-	565	50119034	-	ECA0072	-	ABC transporter ATP-binding protein
70	 59.00	+1	87879..88739	-	286	50119035	-	ECA0073	-	ABC transporter permease protein
71	 57.78	+1	88736..89680	-	314	50119036	-	ECA0074	-	ABC transporter permease protein
72	 54.52	0	89707..91344	-	545	50119037	-	ECA0075	-	ABC-type transporter, substrate binding protein
73	 46.30	0	91666..92868	+	400	50119038	-	ECA0077	-	hypothetical protein
74	 54.93	0	92960..93922	-	320	161501886	tkrA	ECA0078	-	2-hydroxyacid dehydrogenase
75	 45.89	0	93967..94173	-	68	50119040	-	ECA0079	-	hypothetical protein
76	 48.85	0	94276..96228	+	650	50119041	-	ECA0080	-	methyl-accepting chemotaxis protein
77	 49.32	0	96284..96727	-	147	50119042	-	ECA0081	-	hypothetical protein
78	 49.82	0	96724..97287	-	187	50119043	tag	ECA0082	-	DNA-3-methyladenine glycosylase I
79	 59.01	+1	97589..98332	+	247	50119044	-	ECA0083	-	hypothetical protein
80	 52.90	0	98527..99441	+	304	50119045	glyQ	ECA0084	-	glycyl-tRNA synthetase subunit alpha
81	 54.64	0	99451..101520	+	689	50119046	glyS	ECA0085	-	glycyl-tRNA synthetase subunit beta
82	 52.06	0	101812..102516	+	234	50119047	-	ECA0086	-	hypothetical protein
83	 52.46	0	102940..104847	+	635	50119048	mtlA	ECA0087	-	PTS system, mannitol-specific IIABC component
84	 53.52	0	104909..106057	+	382	50119049	mtlD	ECA0088	-	mannitol-1-phosphate 5-dehydrogenase
85	 53.57	0	106133..106735	+	200	50119050	mtlR	ECA0089	-	mannitol repressor protein
86	 49.59	0	106894..107256	+	120	50119051	-	ECA0090	-	hypothetical protein
87	 48.55	0	107366..109258	-	630	50119052	-	ECA0091	-	methyl-accepting chemotaxis protein
88	 49.44	0	109636..110262	-	208	50119053	sodA	ECA0092	-	superoxide dismutase
89	 54.56	0	110522..111355	-	277	50119054	fdhD	ECA0093	-	formate dehydrogenase accessory protein
90	 53.26	0	111626..113161	+	511	50119055	aldB	ECA0094	-	aldehyde dehydrogenase B
91	 48.74	0	113351..114343	+	330	50119056	-	ECA0095	-	hypothetical protein
92	 58.16	+1	114374..115831	-	485	50119057	xylB	ECA0096	-	xylulose kinase
93	 53.33	0	115898..117217	-	439	50119058	xylA	ECA0097	-	xylose isomerase
94	 46.35	0	117691..118689	+	332	50119059	xylF	ECA0098	-	D-xylose transporter subunit XylF
95	 53.18	0	118825..120366	+	513	50119060	xylG	ECA0099	-	xylose transporter ATP-binding subunit
96	 56.26	0	120344..121525	+	393	50119061	xylH	ECA0100	-	xylose transport system permease
97	 52.50	0	121662..122840	+	392	50119062	xylR	ECA0101	-	xylose operon regulatory protein
98	 52.95	0	122910..123485	-	191	50119063	-	ECA0102	-	hypothetical protein
99	 45.54	-1	123731..123943	-	70	50119064	-	ECA0103	-	hypothetical protein
100	 52.34	0	124086..125432	+	448	50119065	argG	ECA0104	-	argininosuccinate synthase
51.14	MEAN

5.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.