IslandPath Analysis: Vibrio fischeri MJ11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.27   STD DEV: 3.71
Vibrio fischeri MJ11 chromosome II, complete sequence - 1..1418848
1254 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 35.90	0	1073..3058	+	661	197337153	-	VFMJ11_A0001	-	RctB
2	 42.82	+1	3408..3755	+	115	197337738	-	VFMJ11_A0002	-	translation initiation inhibitor
3	 25.91	-2	4556..5323	+	255	197337026	-	VFMJ11_A0003	-	putative DNA-binding Protein -- AraC type helix turn helix
4	 30.75	-1	5390..6937	-	515	197337332	-	VFMJ11_A0004	-	methyl-accepting chemotaxis protein
5	 31.08	-1	7053..7274	-	73	197336944	-	VFMJ11_A0005	-	hypothetical protein
6	 29.66	-2	7456..7809	+	117	197337210	-	VFMJ11_A0006	-	hypothetical protein
7	 35.04	0	7867..8394	-	175	197336816	sodC_2	VFMJ11_A0007	-	copper/zinc superoxide dismutase
8	 22.40	-2	8406..8597	-	63	197337104	-	VFMJ11_A0008	-	hypothetical protein
9	 35.77	0	8935..9960	+	341	197337668	-	VFMJ11_A0009	-	OmpA/MotB domain protein
10	 39.13	0	9957..14321	+	1454	197337088	-	VFMJ11_A0010	-	Ig domain protein, group 2 domain protein
11	 44.46	+1	14595..18179	+	1194	197337628	-	VFMJ11_A0011	-	Ig domain protein, group 2 domain protein
12	 28.56	-2	18281..20290	-	669	197337567	-	VFMJ11_A0012	-	LysM domain protein
13	 26.73	-2	20316..21254	-	312	197336847	-	VFMJ11_A0013	-	hypothetical protein
14	 35.28	0	21418..21777	-	119	197336687	-	VFMJ11_A0014	-	protein YgiW
15	 27.97	-2	21786..22847	-	353	197337534	-	VFMJ11_A0015	-	diguanylate cyclase/phosphodiesterase domain 2
16	 37.87	0	23242..24783	+	513	197337196	-	VFMJ11_A0016	-	lipoprotein, putative
17	 32.16	-1	24792..24962	-	56	197337399	-	VFMJ11_A0017	-	hypothetical protein
18	 40.65	0	25141..26247	-	368	197337640	-	VFMJ11_A0018	-	hypothetical protein
19	 38.17	0	26473..27609	+	378	197337091	-	VFMJ11_A0019	-	peptide methionine sulfoxide reductase MsrA/msrB
20	 31.93	-1	27768..28052	+	94	197336971	-	VFMJ11_A0020	-	hypothetical protein
21	 38.89	0	28143..28754	-	203	197337525	gfa	VFMJ11_A0021	-	S-(hydroxymethyl)glutathione synthase
22	 36.08	0	29104..29976	+	290	197337076	-	VFMJ11_A0022	-	phospholipase
23	 41.13	+1	30031..31479	+	482	197337683	-	VFMJ11_A0023	-	catalase
24	 33.52	-1	31700..32239	+	179	197337276	-	VFMJ11_A0024	-	hypothetical protein
25	 42.15	+1	32507..33685	+	392	197336764	-	VFMJ11_A0025	-	chitin-binding protein
26	 35.93	0	33897..34436	+	179	197337308	-	VFMJ11_A0026	-	hypothetical protein
27	 38.94	0	34687..36273	+	528	197336984	-	VFMJ11_A0027	-	ABC transporter ATP-binding protein
28	 38.81	0	36360..36998	+	212	197337514	-	VFMJ11_A0028	-	DNA polymerase III epsilon subunit
29	 38.38	0	37044..38510	-	488	197337108	-	VFMJ11_A0029	-	lipoprotein, putative
30	 29.37	-2	38675..38800	-	41	197337649	-	VFMJ11_A0030	-	hypothetical protein
31	 42.37	+1	39035..40096	+	353	197337238	rsgA_2	VFMJ11_A0031	-	ribosome small subunit-dependent GTPase A
32	 42.69	+1	40284..40700	+	138	197337775	-	VFMJ11_A0032	-	lipoprotein, putative
33	 33.70	0	40783..41325	+	180	197337546	-	VFMJ11_A0033	-	hypothetical protein
34	 36.48	0	41541..42176	+	211	197336673	-	VFMJ11_A0034	-	GntR domain protein
35	 36.98	0	42270..43175	+	301	197337433	-	VFMJ11_A0035	-	2-keto-3-deoxy-galactonokinase
36	 38.47	0	43168..43809	+	213	197337204	-	VFMJ11_A0036	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
37	 37.46	0	43842..44834	+	330	197337901	-	VFMJ11_A0037	-	C4-dicarboxylate-binding periplasmic protein
38	 30.97	-1	44892..45398	+	168	197337067	-	VFMJ11_A0038	-	trap-type c4-dicarboxylate transport system, small permease component
39	 38.49	0	45398..46678	+	426	197336858	-	VFMJ11_A0039	-	trap-type c4-dicarboxylate transport system, large permease component
40	 40.99	+1	46690..47838	+	382	197337160	-	VFMJ11_A0040	-	galactonate dehydratase
41	 40.66	0	47841..49532	+	563	197337707	-	VFMJ11_A0041	-	dehydratase family protein
42	 36.31	0	49529..50434	+	301	197336992	-	VFMJ11_A0042	-	dihydrodipicolinate synthetase
43	 40.08	0	50613..50864	+	83	197337451	-	VFMJ11_A0043	-	hypothetical protein
44	 33.33	-1	50921..51073	-	50	197337712	-	VFMJ11_A0044	-	hypothetical protein
45	 31.17	-1	51224..51454	-	76	197337447	-	VFMJ11_A0045	-	hypothetical protein
46	 37.63	0	51771..51956	+	61	197336919	-	VFMJ11_A0046	-	hypothetical protein
47	 38.21	0	52290..53807	+	505	197337239	-	VFMJ11_A0047	-	di-/tripeptide transporter
48	 36.15	0	53850..54275	-	141	197337442	-	VFMJ11_A0048	-	transcriptional regulator, MarR family
49	 36.96	0	54396..54698	+	100	197337082	-	VFMJ11_A0049	-	hypothetical protein
50	 41.32	+1	54810..56048	-	412	197336947	-	VFMJ11_A0050	-	NADH oxidase
51	 40.37	0	56219..57127	+	302	197337702	-	VFMJ11_A0052	-	transporter, drug/metabolite exporter family
52	 39.70	0	57105..57983	-	292	197336991	-	VFMJ11_A0051	-	transcriptional regulator, LysR family
53	 40.77	0	58083..58445	+	120	197337157	-	VFMJ11_A0053	-	hypothetical protein
54	 42.92	+1	58500..59135	-	211	197337862	-	VFMJ11_A0054	-	chloramphenicol acetyltransferase
55	 37.07	0	59390..59764	-	124	197336976	-	VFMJ11_A0055	-	hypothetical protein
56	 39.45	0	60011..61366	+	451	197337369	-	VFMJ11_A0056	-	filamentation induced by cAMP protein Fic
57	 42.73	+1	61423..62316	-	297	197337742	-	VFMJ11_A0057	-	transcriptional regulator, LysR family
58	 44.76	+2	62432..64453	+	673	197337526	-	VFMJ11_A0058	-	alkyl sulfatase
59	 44.11	+1	64584..65789	-	401	197337803	-	VFMJ11_A0059	-	sugar efflux transporter A
60	 38.29	0	65995..66882	+	295	197337086	-	VFMJ11_A0060	-	transcriptional regulator, AraC family
61	 37.28	0	67007..67843	-	278	197337913	-	VFMJ11_A0061	-	hypothetical protein
62	 40.83	0	68100..68939	+	279	197337209	-	VFMJ11_A0062	-	transcriptional regulator, LysR family
63	 42.65	+1	69212..70552	-	446	197336859	-	VFMJ11_A0063	-	regulatory protein UhpC
64	 43.09	+1	70561..70683	-	40	197336679	-	VFMJ11_A0064	-	sensor protein UhpB
65	 41.27	+1	70683..72005	-	440	197337371	-	VFMJ11_A0065	-	sensor protein UhpB
66	 41.71	+1	72044..72652	-	202	197336798	-	VFMJ11_A0066	-	transcriptional regulatory protein UhpA
67	 40.29	0	72800..74194	-	464	197337888	-	VFMJ11_A0067	-	hexose phosphate transport protein
68	 36.42	0	74490..75233	-	247	197337849	-	VFMJ11_A0068	-	transcriptional regulator, TetR family
69	 37.62	0	75455..76528	+	357	197337013	-	VFMJ11_A0069	-	acriflavin resistance periplasmic protein
70	 40.02	0	76528..77589	+	353	197337070	-	VFMJ11_A0070	-	membrane-fusion protein
71	 39.67	0	77589..80651	+	1020	197337487	-	VFMJ11_A0071	-	acriflavin resistance protein
72	 40.53	0	80841..81257	+	138	197337281	-	VFMJ11_A0072	-	hypothetical cytosolic protein
73	 33.09	-1	81358..82983	-	541	197337637	-	VFMJ11_A0073	-	toxin corregulated pilus biosynthesis protein I
74	 42.36	+1	83471..84190	-	239	197337024	-	VFMJ11_A0074	-	clavaldehyde dehydrogenase
75	 37.54	0	84353..85255	+	300	197337872	-	VFMJ11_A0075	-	transcriptional regulator, LysR family
76	 35.66	0	85333..85461	-	42	197337181	-	VFMJ11_A0076	-	hypothetical protein
77	 33.09	-1	85611..86426	-	271	197336745	-	VFMJ11_A0077	-	hypothetical protein
78	 40.41	0	86572..87843	+	423	197337590	-	VFMJ11_A0078	-	chondroitin sulfate/heparin utilization regulation protein
79	 42.84	+1	87946..90237	+	763	197336735	-	VFMJ11_A0079	-	sulfatase
80	 36.15	0	90335..90547	-	70	197337502	-	VFMJ11_A0080	-	hypothetical protein
81	 35.22	0	90560..91090	-	176	197336957	-	VFMJ11_A0081	-	hypothetical protein
82	 35.56	0	91331..92632	+	433	197337429	-	VFMJ11_A0083	-	diguanylate cyclase
83	 35.89	0	92613..94604	-	663	197337352	-	VFMJ11_A0082	-	sensor protein
84	 35.22	0	94601..95182	-	193	197337415	-	VFMJ11_A0084	-	hypothetical protein
85	 39.10	0	95185..97368	-	727	197336733	-	VFMJ11_A0085	-	TonB-dependent outer membrane receptor
86	 37.16	0	97927..98370	+	147	197337603	-	VFMJ11_A0086	-	mannitol-specific cryptic phosphotransferase enzyme iia component
87	 42.78	+1	98384..99781	+	465	197337728	-	VFMJ11_A0087	-	pts system mannitol-specific eiicba component
88	 38.99	0	99832..101103	+	423	197337863	-	VFMJ11_A0088	-	L-sorbose 1-phosphate reductase
89	 32.56	-1	101162..101680	+	172	197337203	-	VFMJ11_A0089	-	transcriptional regulator
90	 35.78	0	101690..102424	+	244	197337690	-	VFMJ11_A0090	-	hypothetical protein
91	 38.82	0	102434..103180	+	248	197336835	-	VFMJ11_A0091	-	putative hydrolase
92	 41.03	+1	103269..104477	-	402	197337350	-	VFMJ11_A0092	-	oxalate/formate antiporter
93	 35.27	0	105051..105824	+	257	197336941	-	VFMJ11_A0093	-	hypothetical protein
94	 32.90	-1	105878..106339	-	153	197336828	-	VFMJ11_A0094	-	lipoprotein, putative
95	 35.39	0	106627..107160	+	177	197337569	-	VFMJ11_A0095	-	heme NO binding, putative
96	 36.40	0	107178..108905	+	575	197337907	-	VFMJ11_A0096	-	sensor protein LuxQ
97	 39.23	0	108971..110446	-	491	197337228	-	VFMJ11_A0097	-	di-/tripeptide transporter
98	 43.32	+1	110711..111631	-	306	197336985	-	VFMJ11_A0098	-	Zn-dependent enzyme from deacylase/carboxypeptidase superfamily
99	 38.15	0	111654..116057	-	1467	197337462	-	VFMJ11_A0099	-	MshQ
100	 41.15	+1	116050..116484	-	144	197337197	-	VFMJ11_A0100	-	MshP
37.27	MEAN

3.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.