IslandPath Analysis: Thiobacillus denitrificans ATCC 25259



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.88   STD DEV: 4.18
Thiobacillus denitrificans ATCC 25259, complete genome - 1..2909809
2827 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.39	0	137..1510	+	457	74316019	-	Tbd_0001	-	chromosomal replication initiator protein DnaA
2	 64.86	0	1689..2792	+	367	74316020	-	Tbd_0002	-	DNA polymerase III, beta subunit
3	 63.79	0	2860..5331	+	823	74316021	gyrB	Tbd_0003	-	DNA gyrase subunit B
4	 51.49	-2	5337..5705	+	122	74316022	-	Tbd_0004	-	hypothetical protein
5	 57.36	-2	5684..5941	+	85	74316023	-	Tbd_0005	-	hypothetical protein
6	 63.16	0	6165..6620	-	151	74316024	-	Tbd_0006	-	hypothetical protein
7	 64.65	0	6865..7161	-	98	74316025	-	Tbd_0007	-	histone-like DNA-binding protein
8	 65.79	0	7358..8500	-	380	74316026	-	Tbd_0008	-	rhodanese-like protein
9	 65.39	0	8567..8959	-	130	74316027	-	Tbd_0009	-	hypothetical protein
10	 66.12	0	8962..11535	-	857	74316028	-	Tbd_0010	-	DNA topoisomerase I
11	 64.65	0	11542..11988	-	148	74316029	-	Tbd_0011	-	Smg protein
12	 72.90	+1	11993..12955	-	320	74316030	-	Tbd_0012	-	SMF protein
13	 68.15	0	13054..14265	-	403	74316031	-	Tbd_0013	-	peptidoglycan-binding LysM-like protein
14	 66.85	0	14400..14933	+	177	74316032	-	Tbd_0014	-	peptide deformylase
15	 74.41	+2	14943..15872	+	309	74316033	-	Tbd_0015	-	methionyl-tRNA formyltransferase
16	 70.25	+1	15974..17230	+	418	74316034	-	Tbd_0016	-	Fmu, rRNA SAM-dependent methyltransferase
17	 71.64	+1	17235..17837	+	200	74316035	-	Tbd_0017	-	proline rich signal peptide protein
18	 66.57	0	17837..19969	+	710	74316036	-	Tbd_0018	-	multi-sensor Signal transduction histidine kinase
19	 67.22	0	19966..21240	+	424	74316037	-	Tbd_0019	-	two component Fis family transcriptional regulator
20	 65.79	0	21257..22630	+	457	74316038	trkA	Tbd_0020	-	potassium transporter peripheral membrane component
21	 67.01	0	22630..24096	+	488	74316039	-	Tbd_0021	-	trk system potassium uptake membrane protein TrkH
22	 63.44	0	24148..25605	+	485	74316040	-	Tbd_0022	-	trk system potassium uptake membrane protein
23	 66.07	0	25606..25941	+	111	74316041	-	Tbd_0023	-	TPR repeat-containing protein
24	 63.77	0	25961..26236	+	91	74316042	-	Tbd_0024	-	hypothetical protein
25	 61.11	-1	26294..26995	-	233	74316043	-	Tbd_0025	-	phosphate uptake regulator, PhoU
26	 67.63	0	27068..27481	-	137	74316044	-	Tbd_0026	-	hypothetical protein
27	 71.25	+1	27478..28416	-	312	74316045	-	Tbd_0027	-	hypothetical protein
28	 67.85	0	28413..29255	-	280	74316046	-	Tbd_0028	-	ATPase
29	 68.63	0	29347..30570	-	407	74316047	argJ	Tbd_0029	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
30	 63.24	0	30626..30946	-	106	74316048	-	Tbd_0030	-	hypothetical protein
31	 64.60	0	31004..31342	-	112	74316049	-	Tbd_0031	-	hypothetical protein
32	 67.00	0	31407..32003	-	198	74316050	-	Tbd_0032	-	hypothetical protein
33	 70.52	+1	32000..35269	-	1089	74316051	-	Tbd_0033	-	DNA helicase/exodeoxyribonuclease V, subunit A
34	 72.72	+1	35262..37772	-	836	74316052	-	Tbd_0034	-	DNA helicase/exodeoxyribonuclease V, subunit B
35	 60.19	-1	37874..38197	-	107	74316053	-	Tbd_0035	-	7Fe ferredoxin
36	 57.19	-2	38365..38691	+	108	74316054	-	Tbd_0036	-	thioredoxin
37	 63.65	0	38806..40065	+	419	74316055	rho	Tbd_0037	-	transcription termination factor Rho
38	 64.04	0	40112..40225	+	37	74316056	-	Tbd_0038	-	hypothetical protein
39	 62.32	0	40346..40552	+	68	74316057	rpmE	Tbd_0039	-	50S ribosomal protein L31
40	 67.64	0	40581..42122	+	513	74316058	-	Tbd_0040	-	hypothetical protein
41	 70.83	+1	42112..43671	+	519	74316059	-	Tbd_0041	-	hypothetical protein
42	 71.48	+1	43678..44238	+	186	74316060	-	Tbd_0042	-	molybdenum cofactor guanylyltransferase
43	 66.67	0	44243..44992	-	249	74316061	-	Tbd_0043	-	hypothetical protein
44	 70.40	+1	45016..46248	-	410	74316062	glcF	Tbd_0044	-	glycolate oxidase iron-sulfur subunit
45	 64.30	0	46250..46630	-	126	74316063	-	Tbd_0045	-	ring-cleaving dioxygenase
46	 73.83	+1	46631..47677	-	348	74316064	glcE	Tbd_0046	-	glycolate oxidase FAD binding subunit
47	 69.77	0	47677..49128	-	483	74316065	-	Tbd_0047	-	glycolate oxidase, subunit GlcD
48	 71.16	+1	49133..50467	-	444	74316066	-	Tbd_0048	-	hypothetical protein
49	 68.05	0	50491..52728	-	745	74316067	-	Tbd_0049	-	hypothetical protein
50	 69.64	0	52821..53594	+	257	74316068	-	Tbd_0050	-	IclR family transcriptional regulator
51	 65.07	0	53780..54847	+	355	74316069	-	Tbd_0051	-	hypothetical protein
52	 66.48	0	55109..55648	+	179	74316070	-	Tbd_0052	-	glycine cleavage system transcriptional repressor
53	 69.25	0	55791..56756	-	321	74316071	-	Tbd_0053	-	hypothetical protein
54	 64.71	0	56780..57442	-	220	74316072	-	Tbd_0054	-	hypothetical protein
55	 70.10	+1	57493..58074	+	193	74316073	-	Tbd_0055	-	cytochrome c family protein
56	 68.16	0	58176..59510	+	444	74316074	-	Tbd_0056	-	signal transduction protein
57	 71.38	+1	59951..60883	-	310	74316075	-	Tbd_0057	-	hypothetical protein
58	 70.60	+1	60870..62672	-	600	74316076	-	Tbd_0058	-	ribonucleoside-diphosphate reductase alpha chain
59	 67.99	0	62766..63749	+	327	74316077	-	Tbd_0059	-	serine/threonine protein kinase
60	 67.29	0	63763..65529	+	588	74316078	-	Tbd_0060	-	asparagine synthase, glutamine-hydrolyzing
61	 70.50	+1	65522..66826	+	434	74316079	-	Tbd_0061	-	lytic murein transglycosylase
62	 69.65	0	66883..67284	+	133	74316080	-	Tbd_0062	-	hypothetical protein
63	 70.75	+1	67281..67598	+	105	74316081	-	Tbd_0063	-	hypothetical protein
64	 69.66	0	67635..68303	-	222	74316082	-	Tbd_0064	-	putative cytochrome C precursor
65	 71.04	+1	68396..69286	-	296	74316083	-	Tbd_0065	-	hypothetical protein
66	 69.06	0	69293..69709	-	138	74316084	-	Tbd_0066	-	GreA/GreB family elongation factor
67	 71.54	+1	69883..70539	-	218	74316085	-	Tbd_0067	-	hypothetical protein
68	 70.27	+1	70570..71208	+	212	74316086	-	Tbd_0068	-	metallo-beta-lactamase superfamily protein
69	 72.85	+1	71231..72136	-	301	74316087	-	Tbd_0069	-	arginase
70	 65.38	0	72194..73747	-	517	74316088	-	Tbd_0070	-	nitrite reductase (NO-forming)
71	 67.58	0	73747..74946	-	399	74316089	-	Tbd_0071	-	Elongator protein 3/MiaB/NifB
72	 70.46	+1	74957..75457	-	166	74316090	-	Tbd_0072	-	AsnC family transcriptional regulator
73	 67.57	0	75454..75897	-	147	74316091	-	Tbd_0073	-	AsnC family transcriptional regulator
74	 68.06	0	75897..76901	-	334	74316092	-	Tbd_0074	-	AsnC family transcriptional regulator
75	 67.77	0	76898..78073	-	391	74316093	-	Tbd_0075	-	heme d1 biosynthesis protein NirF
76	 65.99	0	78063..78359	-	98	74316094	-	Tbd_0076	-	hypothetical protein
77	 63.14	0	78456..80183	-	575	74316095	-	Tbd_0077	-	nitrite reductase (NO-forming)
78	 68.00	0	80265..82142	-	625	74316096	-	Tbd_0078	-	regulator of nitric oxide reductase transcription
79	 64.01	0	82263..82940	+	225	74316097	-	Tbd_0079	-	Crp/FNR family transcriptional regulator
80	 67.23	0	83013..83366	-	117	74316098	-	Tbd_0080	-	hypothetical protein
81	 66.44	0	83363..84241	-	292	74316099	-	Tbd_0081	-	2-hydroxy-3-oxopropionate reductase
82	 68.65	0	84238..85194	-	318	74316100	-	Tbd_0082	-	hypothetical protein
83	 66.05	0	85295..86260	-	321	74316101	-	Tbd_0083	-	D-alanyl-D-alanine carboxypeptidase-like protein
84	 70.34	+1	86420..88381	+	653	74316102	-	Tbd_0084	-	histidine kinase
85	 66.17	0	88385..90601	+	738	74316103	-	Tbd_0085	-	response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
86	 65.20	0	91054..91395	+	113	74316104	-	Tbd_0086	-	hypothetical protein
87	 58.80	-1	91560..91826	+	88	74316105	-	Tbd_0087	-	hypothetical protein
88	 65.07	0	91851..93665	+	604	74316106	-	Tbd_0088	-	sodium:solute symporter family protein
89	 69.09	0	93724..94425	-	233	74316107	-	Tbd_0089	-	exonuclease
90	 65.87	0	94422..96311	-	629	74316108	-	Tbd_0090	-	CBS signal-transduction protein
91	 64.36	0	96510..98153	-	547	74316109	-	Tbd_0091	-	chaperonin GroEL (Hsp60, Cpn10)
92	 60.48	-1	98205..98495	-	96	74316110	-	Tbd_0092	-	chaperonin GroES (Hsp10, Cpn10))
93	 68.82	0	98567..99961	+	464	74316111	-	Tbd_0093	-	aminotransferase
94	 67.51	0	100137..100613	+	158	74316112	-	Tbd_0094	-	hypothetical protein
95	 68.98	0	100853..102277	+	474	74316113	-	Tbd_0095	-	metallo-beta-lactamase superfamily protein
96	 64.31	0	102280..103338	+	352	74316114	-	Tbd_0096	-	phospholipase
97	 68.92	0	103358..104245	-	295	74316115	-	Tbd_0097	-	serine protease
98	 64.95	0	104260..105540	+	426	74316116	-	Tbd_0098	-	UDP-glucose/GDP-mannose dehydrogenase
99	 65.99	0	105540..106568	+	342	74316117	-	Tbd_0099	-	NAD-dependent epimerase/dehydratase
100	 65.33	0	106695..108335	+	546	74316118	-	Tbd_0100	-	signal transduction protein
65.88	MEAN

4.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.