IslandPath Analysis: Herminiimonas arsenicoxydans



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.41   STD DEV: 4.55
Herminiimonas arsenicoxydans, complete genome - 1..3424307
3325 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.51	0	278..1660	+	460	134093295	dnaA	HEAR0001	-	chromosomal replication initiator protein dnaA
2	 55.19	0	2006..3112	+	368	134093296	dnaN	HEAR0003	-	DNA polymerase III subunit beta
3	 49.40	-1	3259..3426	+	55	134093297	-	HEAR0004	-	hypothetical protein
4	 57.46	0	3454..5961	+	835	134093298	gyrB	HEAR0005	-	DNA gyrase subunit B
5	 37.65	-2	6021..7040	-	339	134093299	-	HEAR0006	-	hypothetical protein
6	 38.47	-2	7189..7947	-	252	134093300	-	HEAR0007	-	hypothetical protein
7	 44.61	-2	8189..8986	-	265	134093301	-	HEAR0008	-	putative restriction endonuclease
8	 49.40	-1	9016..9936	-	306	134093302	-	HEAR0009	-	DNA topoisomerase/restriction endonuclease domain-containing proteins
9	 42.11	-2	10049..10162	-	37	134093303	-	HEAR0011	-	hypothetical protein
10	 51.57	0	10181..10657	-	158	134093304	-	HEAR0012	-	hypothetical protein
11	 60.56	+1	10799..11911	+	370	134093305	-	HEAR0013	-	putative NADH:FMN flavin oxidoreductase
12	 52.97	0	12148..12366	+	72	134093306	-	HEAR0015	-	hypothetical protein
13	 56.89	0	12459..12683	-	74	134093307	-	HEAR0016	-	hypothetical protein
14	 58.99	+1	12835..14736	-	633	134093308	-	HEAR0017	-	putative methyl-accepting chemotaxis sensory transducer
15	 54.61	0	15078..16271	+	397	134093309	pncB	HEAR0018	-	nicotinate phosphoribosyltransferase
16	 56.13	0	16275..17024	-	249	134093310	-	HEAR0019	-	outer membrane protein W
17	 51.28	0	17037..17192	-	51	134093311	-	HEAR0020	-	hypothetical protein
18	 50.00	0	17432..17797	+	121	134093312	-	HEAR0021	-	hypothetical protein
19	 55.71	0	18170..20140	-	656	134093313	-	HEAR0023	-	putative secretion pathway protein
20	 55.75	0	20231..23080	-	949	134093314	-	HEAR0024	-	putative Jacalin-related lectin family protein
21	 48.68	-1	23107..23295	-	62	134093315	-	HEAR0025	-	hypothetical protein
22	 53.90	0	23320..24024	-	234	134093316	-	HEAR0026	-	putative sensor/ regulator protein
23	 45.57	-1	24085..24321	-	78	134093317	-	HEAR0027	-	hypothetical protein
24	 57.08	0	24394..25989	-	531	134093318	ahpF	HEAR0028	-	Alkyl hydroperoxide reductase subunit F (Alkyl hydroperoxide reductase F52A protein)
25	 50.53	0	26152..26715	-	187	134093319	ahpC	HEAR0029	-	alkyl hydroperoxide reductase subunit C
26	 58.39	0	26996..27865	+	289	134093320	-	HEAR0030	-	putative Pirin-related protein
27	 57.25	0	28055..28819	+	254	134093321	-	HEAR0031	-	hypothetical protein
28	 53.76	0	28884..29069	+	61	134093322	-	HEAR0032	-	4-oxalocrotonate tautomerase
29	 59.37	+1	29153..29563	+	136	134093323	-	HEAR0033	-	putative peptide chain release factor
30	 55.15	0	29680..30261	+	193	134093324	-	HEAR0034	-	putative transcription elongation factor GreA/GreB
31	 52.38	0	30322..30678	+	118	134093325	-	HEAR0035	-	hypothetical protein
32	 52.07	0	31045..33195	+	716	134093326	-	HEAR0036	-	putative outer membrane TonB-dependent receptor protein
33	 50.26	0	33152..33346	+	64	134093327	-	HEAR0037	-	hypothetical protein
34	 50.77	0	33432..33626	+	64	134093328	-	HEAR0038	-	hypothetical protein
35	 53.49	0	33740..34498	+	252	134093329	-	HEAR0039	-	transcriptional regulator
36	 63.20	+1	34495..35937	+	480	134093330	-	HEAR0040	-	putative outer membrane efflux protein
37	 58.68	0	35998..37149	+	383	134093331	-	HEAR0041	-	hypothetical protein
38	 59.54	+1	37203..40277	+	1024	134093332	-	HEAR0042	-	putative acriflavin resistance/multidrug efflux transporter AcrB
39	 58.91	0	40295..41029	+	244	134093333	-	HEAR0043	-	hypothetical protein
40	 52.50	0	41047..41286	+	79	134093334	-	HEAR0044	-	hypothetical protein
41	 58.20	0	41307..42404	-	365	134093335	-	HEAR0045	-	putative two-component sensor histidine kinase
42	 57.40	0	42539..43045	-	168	134093336	-	HEAR0046	-	hypothetical protein
43	 56.78	0	43350..44360	+	336	134093337	-	HEAR0047	-	putative acyltransferase
44	 57.87	0	44411..46684	-	757	134093338	-	HEAR0048	-	nitric oxide reductase NorB/NorZ-like
45	 54.95	0	46874..48589	-	571	134093339	-	HEAR0049	-	putative sulfatase membrane protein
46	 55.48	0	48721..50007	-	428	134093340	-	HEAR0050	-	putative two-component sensor histidine kinase
47	 56.43	0	49997..50680	-	227	134093341	-	HEAR0051	-	putative two-component system regulatory protein
48	 49.74	-1	50698..50892	-	64	134093342	-	HEAR0052	-	hypothetical protein
49	 52.33	0	50914..51192	-	92	134093343	-	HEAR0053	-	hypothetical protein
50	 56.53	0	51244..52377	-	377	134093344	-	HEAR0054	-	putative soluble quinoprotein glucose dehydrogenase
51	 50.00	0	52555..52800	-	81	134093345	-	HEAR0055	-	hypothetical protein
52	 52.49	0	53305..53988	-	227	134093346	-	HEAR0056	-	ATPase domain-containing protein
53	 56.94	0	54362..55729	-	455	134093347	-	HEAR0057	-	putative iron-regulated membrane protein
54	 53.36	0	55752..58043	-	763	134093348	-	HEAR0058	-	putative TonB-dependent receptor protein
55	 55.19	0	58115..58576	-	153	134093349	-	HEAR0059	-	hypothetical protein
56	 56.89	0	58615..58839	-	74	134093350	-	HEAR0060	-	putative membrane protein with signal peptide
57	 61.60	+1	58924..59160	-	78	134093351	-	HEAR0061	-	hypothetical protein
58	 56.24	0	59526..60158	+	210	134093352	-	HEAR0062	-	putative membrane protein with signal peptide
59	 57.62	0	60219..60638	+	139	134093353	-	HEAR0063	-	putative glyoxalase/Bleomycin resistance protein/dihydroxybiphenyl dioxygenase family protein
60	 53.58	0	60691..61248	+	185	134093354	-	HEAR0064	-	hypothetical protein
61	 58.33	0	61264..61731	+	155	134093355	-	HEAR0065	-	hypothetical protein
62	 51.92	0	61960..62298	+	112	134093356	-	HEAR0066	-	hypothetical protein
63	 52.48	0	62401..62703	-	100	134093357	-	HEAR0067	-	extracellular polysaccharide biosynthesis protein
64	 56.24	0	62868..63356	+	162	134093358	-	HEAR0068	-	hypothetical protein
65	 56.11	0	63382..64395	+	337	134093359	-	HEAR0069	-	putative permease
66	 62.36	+1	64405..65658	-	417	134093360	-	HEAR0070	-	putative oxidoreductase
67	 54.80	0	65895..66467	+	190	134093361	tag	HEAR0071	-	DNA-3-methyladenine glycosylase I (3-methyladenine-DNA glycosylase I) (TAG I) (DNA-3-methyladenine glycosidase I)
68	 57.01	0	67075..67395	+	106	134093362	sugE	HEAR0072	-	quaternary ammonium compound-resistance protein sugE
69	 53.86	0	67436..67966	-	176	134093363	-	HEAR0073	-	putative histone-lysine N-methyltransferase
70	 57.29	0	67998..68189	-	63	134093364	-	HEAR0074	-	hypothetical protein
71	 56.89	0	68262..69980	-	572	134093365	tar	HEAR0075	-	methyl-accepting chemotaxis protein II (MCP-II) (aspartate chemoreceptor protein)
72	 54.29	0	70078..70578	-	166	134093366	cheW	HEAR0076	-	chemotaxis protein cheW
73	 45.87	-1	70703..71005	-	100	134093367	-	HEAR0077	-	hypothetical protein
74	 58.02	0	71172..72617	+	481	134093368	-	HEAR0078	-	putative FAD-dependent pyridine nucleotide-disulphide oxidoreductase
75	 53.00	0	72694..73659	-	321	134093369	-	HEAR0079	-	magnesium/cobalt transporter CorA
76	 58.45	0	73816..74691	-	291	134093370	-	HEAR0080	-	hypothetical protein
77	 57.16	0	74922..76373	+	483	134093371	-	HEAR0081	-	hypothetical protein
78	 56.48	0	76389..76604	-	71	134093372	-	HEAR0082	-	hypothetical protein
79	 59.19	+1	76736..78421	+	561	134093373	-	HEAR0083	-	putative sulfate transporter
80	 55.32	0	78581..79153	+	190	134093374	-	HEAR0084	-	putative membrane protein with signal peptide
81	 56.30	0	79269..80030	-	253	134093375	-	HEAR0085	-	TerC family protein
82	 52.01	0	80352..81170	+	272	134093376	-	HEAR0086	-	putative membrane protein with short-chain dehydrogenase/reductase
83	 57.33	0	81233..81982	-	249	134093377	-	HEAR0087	-	GntR family transcriptional regulator
84	 62.37	+1	82139..82882	+	247	134093378	-	HEAR0088	-	putative alpha/beta hydrolase family protein
85	 60.29	+1	82899..84137	+	412	134093379	-	HEAR0089	-	putative alcohol dehydrogenase
86	 56.11	0	84283..85665	+	460	134093380	-	HEAR0090	-	putative transporter
87	 58.27	0	85857..86630	+	257	134093381	-	HEAR0091	-	GntR family transcriptional regulator
88	 49.48	-1	86678..86869	+	63	134093382	-	HEAR0092	-	hypothetical protein
89	 59.80	+1	87069..88802	+	577	134093383	argS	HEAR0093	-	arginyl-tRNA synthetase
90	 57.49	0	88813..89433	+	206	134093384	-	HEAR0094	-	putative membrane protein with signal peptide related to cell division
91	 55.45	0	89460..90119	+	219	134093385	dsbA	HEAR0095	-	Thiol:disulfide interchange protein dsbA precursor
92	 59.25	+1	90218..91012	+	264	134093386	-	HEAR0096	-	short chain dehydrogenase
93	 37.69	-2	91331..92179	-	282	134093387	-	HEAR0097	-	hypothetical protein
94	 56.34	0	92321..93385	-	354	134093388	-	HEAR0098	-	putative metallo-hydrolase/oxidoreductase with heme-binding site
95	 58.09	0	93536..93943	+	135	134093389	-	HEAR0099	-	hypothetical protein
96	 58.65	0	94011..95357	+	448	134093390	bioA	HEAR0100	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
97	 58.43	0	95436..96188	+	250	134093391	-	HEAR0101	-	putative dethiobiotin synthetase (dethiobiotin synthase) (DTB synthetase) (DTBS) (BioD)
98	 58.82	0	96212..97231	+	339	134093392	bioB	HEAR0102	-	biotin synthase (biotin synthetase)
99	 57.78	0	97440..98249	+	269	134093393	-	HEAR0103	-	putative hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase)
100	 55.97	0	98334..100268	-	644	134093394	-	HEAR0104	-	putative TRAP-type C4-dicarboxylate transport system, large permease component
54.41	MEAN

4.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.