IslandPath Analysis: Methylobacterium extorquens PA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.64   STD DEV: 4.16
Methylobacterium extorquens PA1, complete genome - 1..5471154
4829 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.99	0	44..1549	+	501	163849458	-	Mext_0001	-	chromosomal replication initiation protein
2	 67.02	0	1870..2991	+	373	163849459	-	Mext_0002	-	DNA polymerase III subunit beta
3	 73.59	+1	3032..4186	+	384	163849460	-	Mext_0003	-	DNA replication and repair protein RecF
4	 64.69	0	4190..4594	-	134	163849461	-	Mext_0004	-	PilT domain-containing protein
5	 62.08	-1	4594..4833	-	79	163849462	-	Mext_0005	-	transcription factor
6	 68.67	0	4936..6783	+	615	163849463	-	Mext_0006	-	ATP-dependent DNA helicase RecQ
7	 54.87	-2	6841..7179	-	112	163849464	-	Mext_0007	-	hypothetical protein
8	 67.69	0	7495..8181	+	228	163849465	-	Mext_0008	-	hypothetical protein
9	 69.98	0	8303..10504	+	733	163849466	-	Mext_0009	-	RecD/TraA family helicase
10	 69.90	0	10657..11832	+	391	163849467	-	Mext_0010	-	hypothetical protein
11	 68.91	0	12023..14248	+	741	163849468	-	Mext_0011	-	phosphoribosylformylglycinamidine synthase II
12	 67.93	0	14276..14512	+	78	163849469	-	Mext_0012	-	BolA family protein
13	 61.31	-1	14586..14921	+	111	163849470	-	Mext_0013	-	glutaredoxin-like protein
14	 69.88	0	14994..15896	+	300	163849471	-	Mext_0014	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
15	 67.68	0	16005..16889	+	294	163849472	-	Mext_0015	-	SMP-30/gluconolaconase/LRE domain-containing protein
16	 67.13	0	17075..17290	+	71	163849473	-	Mext_0016	-	hypothetical protein
17	 69.89	0	17318..18154	-	278	163849474	-	Mext_0017	-	hypothetical protein
18	 69.06	0	18512..20557	-	681	163849475	-	Mext_0018	-	ATPase domain-containing protein
19	 65.83	0	20557..22119	-	520	163849476	-	Mext_0019	-	non-specific serine/threonine protein kinase
20	 69.25	0	22475..23674	+	399	163849477	-	Mext_0020	-	hypothetical protein
21	 69.87	0	23704..24702	-	332	163849478	-	Mext_0021	-	short-chain dehydrogenase/reductase SDR
22	 70.31	0	24825..25511	-	228	163849479	-	Mext_0022	-	GntR domain-containing protein
23	 68.25	0	26161..27807	+	548	163849480	-	Mext_0024	-	malonate decarboxylase, alpha subunit
24	 71.52	0	27815..28123	+	102	163849481	-	Mext_0025	-	malonate decarboxylase subunit delta
25	 71.81	0	28126..29058	+	310	163849482	-	Mext_0026	-	malonate decarboxylase subunit beta
26	 71.97	0	29045..29761	+	238	163849483	-	Mext_0027	-	malonate decarboxylase, gamma subunit
27	 74.73	+1	29754..30410	+	218	163849484	-	Mext_0028	-	hypothetical protein
28	 75.15	+1	30407..31267	+	286	163849485	-	Mext_0029	-	triphosphoribosyl-dephospho-CoA synthase MdcB
29	 72.51	0	31264..32187	+	307	163849486	-	Mext_0030	-	acyl transferase domain-containing protein
30	 70.94	0	32325..34709	-	794	163849487	-	Mext_0031	-	general secretion pathway protein D
31	 65.98	0	34769..35206	-	145	163849488	-	Mext_0032	-	ROSMUCR transcriptional regulator
32	 64.41	-1	35503..35946	-	147	163849489	-	Mext_0033	-	hypothetical protein
33	 66.76	0	36123..37223	+	366	163849490	-	Mext_0034	-	helix-turn-helix domain-containing protein
34	 58.83	-2	37811..38818	+	335	163849491	-	Mext_0035	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
35	 55.67	-2	38822..41194	+	790	163849492	-	Mext_0036	-	Kojibiose phosphorylase
36	 62.72	-1	41357..42952	+	531	163849493	-	Mext_0037	-	YidE/YbjL duplication
37	 67.80	0	43248..45533	-	761	163849494	-	Mext_0038	-	Kojibiose phosphorylase
38	 68.72	0	45526..46254	-	242	163849495	-	Mext_0039	-	HAD family hydrolase
39	 60.34	-1	46285..48720	-	811	163849496	-	Mext_0040	-	putative phosphoketolase
40	 72.46	0	48862..49362	-	166	163849497	-	Mext_0041	-	hypothetical protein
41	 57.94	-2	49557..49808	-	83	163849498	-	Mext_0042	-	hypothetical protein
42	 63.43	-1	50049..51131	-	360	163849499	-	Mext_0043	-	helix-turn-helix domain-containing protein
43	 59.34	-2	51685..51957	-	90	163849500	-	Mext_0044	-	hypothetical protein
44	 63.19	-1	52134..53255	-	373	163849501	-	Mext_0045	-	helix-turn-helix domain-containing protein
45	 57.61	-2	53426..53734	+	102	163849502	-	Mext_0046	-	hypothetical protein
46	 64.87	0	53886..54443	+	185	163849503	-	Mext_0047	-	hypothetical protein
47	 69.07	0	54670..55209	+	179	163849504	-	Mext_0048	-	hypothetical protein
48	 68.82	0	55414..57084	-	556	163849505	-	Mext_0049	-	sulphate transporter
49	 69.25	0	57598..58023	+	141	163849506	-	Mext_0050	-	hypothetical protein
50	 65.52	0	58205..58726	-	173	163849507	-	Mext_0051	-	GCN5-related N-acetyltransferase
51	 67.49	0	59158..60132	+	324	163849508	-	Mext_0052	-	phosphate butyryltransferase
52	 67.99	0	60136..61344	+	402	163849509	-	Mext_0053	-	acetate kinase
53	 61.41	-1	61361..61855	+	164	163849510	-	Mext_0054	-	hypothetical protein
54	 68.51	0	62921..63733	-	270	163849511	-	Mext_0055	-	transposase IS4 family protein
55	 62.76	-1	63895..64893	-	332	163849512	-	Mext_0056	-	alpha/beta hydrolase fold
56	 61.38	-1	65086..65331	-	81	163849513	-	Mext_0057	-	hypothetical protein
57	 55.62	-2	65450..66517	-	355	163849514	-	Mext_0058	-	peptidase M42 family protein
58	 57.72	-2	68678..69493	-	271	163849515	-	Mext_0059	-	inositol monophosphatase
59	 61.19	-1	69694..70113	+	139	163849516	-	Mext_0060	-	glyoxalase/bleomycin resistance protein/dioxygenase
60	 61.23	-1	70186..71049	+	287	163849517	-	Mext_0061	-	alpha/beta hydrolase fold
61	 59.15	-2	71265..71876	+	203	163849518	-	Mext_0062	-	isochorismatase hydrolase
62	 60.73	-1	71912..72652	+	246	163849519	-	Mext_0063	-	hypothetical protein
63	 60.00	-2	72717..73016	+	99	163849520	-	Mext_0064	-	hypothetical protein
64	 64.47	-1	74421..75104	-	227	163849521	-	Mext_0065	-	nuclease
65	 57.60	-2	76284..76625	+	113	163849522	-	Mext_0066	-	hypothetical protein
66	 62.94	-1	76972..77427	-	151	163849523	-	Mext_0067	-	hypothetical protein
67	 66.25	0	78700..80124	-	474	163849524	-	Mext_0068	-	GTP-binding proten HflX
68	 59.31	-2	80629..80832	-	67	163849525	-	Mext_0069	-	hypothetical protein
69	 66.45	0	81062..81523	-	153	163849526	-	Mext_0070	-	hypothetical protein
70	 57.84	-2	82224..82778	+	184	163849527	-	Mext_0071	-	hypothetical protein
71	 60.91	-1	83173..83415	+	80	163849528	-	Mext_0072	-	hypothetical protein
72	 66.67	0	83457..84224	-	255	163849529	-	Mext_0073	-	cyclic nucleotide-binding
73	 63.08	-1	84221..84610	-	129	163849530	-	Mext_0074	-	response regulator receiver protein
74	 67.93	0	84876..85589	+	237	163849531	-	Mext_0075	-	hypothetical protein
75	 66.67	0	85589..85849	+	86	163849532	-	Mext_0076	-	hypothetical protein
76	 68.10	0	85897..86175	+	92	163849533	-	Mext_0077	-	hypothetical protein
77	 61.57	-1	86210..86464	-	84	163849534	-	Mext_0078	-	hypothetical protein
78	 62.07	-1	87032..87292	+	86	163849535	-	Mext_0079	-	hypothetical protein
79	 63.91	-1	88117..88515	-	132	163849536	-	Mext_0080	-	hypothetical protein
80	 65.61	0	88725..89294	+	189	163849537	-	Mext_0081	-	integrase family protein
81	 64.41	-1	89423..90529	+	368	163849538	-	Mext_0082	-	ErfK/YbiS/YcfS/YnhG family protein
82	 67.03	0	90667..91758	-	363	163849539	-	Mext_0083	-	lytic transglycosylase catalytic
83	 63.04	-1	92148..92423	-	91	163849540	-	Mext_0084	-	hypothetical protein
84	 64.00	-1	92517..93680	-	387	163849541	-	Mext_0085	-	hypothetical protein
85	 60.75	-1	93748..93933	+	61	163849542	-	Mext_0086	-	hypothetical protein
86	 61.62	-1	94010..94405	+	131	163849543	-	Mext_0087	-	hypothetical protein
87	 65.98	0	94529..95107	+	192	163849544	-	Mext_0088	-	hypothetical protein
88	 66.26	0	95151..95393	+	80	163849545	-	Mext_0089	-	transcriptional regulator protein-like protein
89	 64.29	-1	95390..95767	+	125	163849546	-	Mext_0090	-	transcriptional regulator protein-like protein
90	 65.53	0	95764..96468	-	234	163849547	-	Mext_0091	-	dienelactone hydrolase
91	 60.00	-2	96638..97042	-	134	163849548	-	Mext_0092	-	hypothetical protein
92	 67.72	0	97029..97979	-	316	163849549	-	Mext_0093	-	hypothetical protein
93	 63.90	-1	98364..99014	-	216	163849550	-	Mext_0094	-	putative cytochrome c oxidase subunit III protein
94	 63.28	-1	99011..100927	-	638	163849551	-	Mext_0095	-	cytochrome c oxidase, subunit I
95	 64.88	0	100924..101928	-	334	163849552	-	Mext_0096	-	cytochrome c oxidase, subunit II
96	 65.78	0	101936..102499	-	187	163849553	-	Mext_0097	-	cytochrome c class I
97	 66.07	0	102496..103332	-	278	163849554	-	Mext_0098	-	extracellular solute-binding protein
98	 64.74	0	103313..105130	-	605	163849555	-	Mext_0099	-	methanol/ethanol family PQQ-dependent dehydrogenase
99	 59.88	-2	105565..105888	+	107	163849556	-	Mext_0100	-	hypothetical protein
100	 66.44	0	105966..107288	-	440	163849557	-	Mext_0101	-	integrase family protein
68.64	MEAN

4.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.