IslandPath Analysis: Burkholderia cenocepacia HI2424



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.92   STD DEV: 4.27
Burkholderia cenocepacia HI2424 chromosome 2, complete sequence - 1..2998664
2686 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.63	-1	220..417	-	65	116691274	-	Bcen2424_3167	-	hypothetical protein
2	 64.56	0	717..2378	-	553	162228942	-	Bcen2424_3168	-	malate:quinone oxidoreductase
3	 69.16	0	2898..3218	-	106	116691276	-	Bcen2424_3169	-	hypothetical protein
4	 67.60	0	3573..4538	-	321	116691277	-	Bcen2424_3171	-	MscS mechanosensitive ion channel
5	 72.34	+1	4723..6096	+	457	116691278	-	Bcen2424_3172	-	peptidase M23B
6	 66.76	0	6422..7519	+	365	116691279	-	Bcen2424_3173	-	catalase domain-containing protein
7	 64.02	0	7516..8082	+	188	116691280	-	Bcen2424_3174	-	cytochrome B561
8	 65.57	0	8624..11905	+	1093	116691281	-	Bcen2424_3175	-	outer membrane autotransporter
9	 64.49	0	12063..12797	-	244	116691282	-	Bcen2424_3176	-	fucose-binding lectin II
10	 64.71	0	12960..13778	-	272	116691283	-	Bcen2424_3177	-	fucose-binding lectin II
11	 62.05	-1	13893..14282	-	129	116691284	-	Bcen2424_3178	-	fucose-binding lectin II
12	 66.02	0	15239..16951	+	570	116691285	-	Bcen2424_3179	-	2-isopropylmalate synthase
13	 67.51	0	17023..17736	-	237	116691286	-	Bcen2424_3180	-	LuxR family transcriptional regulator
14	 71.57	+1	17933..18748	+	271	116691287	-	Bcen2424_3181	-	AraC family transcriptional regulator
15	 69.49	0	18772..20118	-	448	116691288	-	Bcen2424_3182	-	hypothetical protein
16	 69.68	0	20175..21536	-	453	116691289	-	Bcen2424_3183	-	condensation domain-containing protein
17	 66.03	0	21934..22716	+	260	116691290	-	Bcen2424_3184	-	hypothetical protein
18	 68.46	0	22713..23102	+	129	116691291	-	Bcen2424_3185	-	cupin 2 domain-containing protein
19	 67.10	0	23099..24025	+	308	116691292	-	Bcen2424_3186	-	hypothetical protein
20	 72.72	+1	24035..27601	+	1188	116691293	-	Bcen2424_3187	-	amino acid adenylation domain-containing protein
21	 66.26	0	27657..28145	+	162	116691294	-	Bcen2424_3188	-	hypothetical protein
22	 69.81	0	28174..29160	-	328	116691295	-	Bcen2424_3189	-	LysR family transcriptional regulator
23	 69.90	0	29280..30113	-	277	116691296	-	Bcen2424_3190	-	AraC family transcriptional regulator
24	 74.23	+1	30170..31663	+	497	116691297	-	Bcen2424_3191	-	RND efflux system outer membrane lipoprotein
25	 72.36	+1	31723..32847	+	374	116691298	-	Bcen2424_3192	-	secretion protein HlyD family protein
26	 67.55	0	32844..34427	+	527	116691299	-	Bcen2424_3193	-	EmrB/QacA family drug resistance transporter
27	 67.26	0	34627..34962	+	111	116691300	-	Bcen2424_3194	-	ArsR family transcriptional regulator
28	 67.82	0	34959..35477	+	172	116691301	-	Bcen2424_3195	-	protein tyrosine phosphatase
29	 65.34	0	35486..36613	+	375	116691302	-	Bcen2424_3196	-	arsenical-resistance protein
30	 65.05	0	36661..37401	+	246	116691303	-	Bcen2424_3197	-	NADPH-dependent FMN reductase
31	 72.68	+1	37732..39177	+	481	116691304	-	Bcen2424_3198	-	histidine kinase
32	 71.01	0	39174..39818	+	214	116691305	-	Bcen2424_3199	-	two component LuxR family transcriptional regulator
33	 66.67	0	40097..40876	+	259	116691306	-	Bcen2424_3200	-	carbonate dehydratase
34	 64.14	0	40990..41700	+	236	116691307	-	Bcen2424_3201	-	porin, opacity type
35	 69.61	0	41791..42810	+	339	116691308	-	Bcen2424_3202	-	hypothetical protein
36	 64.13	0	42807..43475	+	222	116691309	-	Bcen2424_3203	-	multiple antibiotic resistance (MarC)-related proteins
37	 64.74	0	43760..45265	+	501	116691310	-	Bcen2424_3204	-	integrase catalytic subunit
38	 59.65	-1	45258..46055	+	265	116691311	-	Bcen2424_3205	-	IstB ATP binding domain-containing protein
39	 56.05	-2	46105..46641	-	178	116691312	-	Bcen2424_3206	-	NmrA family protein
40	 63.29	0	46823..47740	-	305	116691313	-	Bcen2424_3207	-	hypothetical protein
41	 59.98	-1	47840..48751	+	303	116691314	-	Bcen2424_3208	-	LysR family transcriptional regulator
42	 68.83	0	49093..50340	-	415	116691315	-	Bcen2424_3209	-	citrate synthase
43	 67.43	0	50401..50793	-	130	116691316	-	Bcen2424_3210	-	glyoxalase/bleomycin resistance protein/dioxygenase
44	 64.34	0	50841..52127	-	428	116691317	-	Bcen2424_3211	-	major facilitator transporter
45	 67.19	0	52222..52980	-	252	116691318	-	Bcen2424_3212	-	short-chain dehydrogenase/reductase SDR
46	 66.87	0	53294..54256	+	320	116691319	-	Bcen2424_3213	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
47	 68.76	0	54801..55946	+	381	116691320	-	Bcen2424_3214	-	mandelate racemase/muconate lactonizing protein
48	 67.80	0	56029..57351	+	440	116691321	-	Bcen2424_3215	-	major facilitator transporter
49	 61.86	-1	57495..58202	-	235	116691322	-	Bcen2424_3216	-	short-chain dehydrogenase/reductase SDR
50	 52.53	-2	58227..58523	-	98	116691323	-	Bcen2424_3217	-	hypothetical protein
51	 52.79	-2	58603..59409	-	268	116691324	-	Bcen2424_3218	-	short-chain dehydrogenase/reductase SDR
52	 55.71	-2	59748..60842	+	364	116691325	-	Bcen2424_3219	-	AraC family transcriptional regulator
53	 56.54	-2	61126..61530	-	134	116691326	-	Bcen2424_3220	-	hypothetical protein
54	 64.39	0	61564..62529	-	321	116691327	-	Bcen2424_3221	-	alpha/beta hydrolase domain-containing protein
55	 65.58	0	62692..63609	-	305	116691328	-	Bcen2424_3222	-	LysR family transcriptional regulator
56	 65.10	0	63747..64511	+	254	116691329	-	Bcen2424_3223	-	short-chain dehydrogenase/reductase SDR
57	 64.27	0	64595..65302	+	235	116691330	-	Bcen2424_3224	-	pirin domain-containing protein
58	 62.02	-1	65670..65927	-	85	116691331	-	Bcen2424_3225	-	hypothetical protein
59	 61.06	-1	66065..67009	-	314	116691332	-	Bcen2424_3226	-	LysR family transcriptional regulator
60	 63.85	0	67191..68114	+	307	116691333	-	Bcen2424_3227	-	dihydrodipicolinate synthetase
61	 60.22	-1	68351..69793	+	480	116691334	-	Bcen2424_3228	-	major facilitator transporter
62	 59.12	-1	69984..71057	+	357	116691335	-	Bcen2424_3229	-	porin
63	 61.24	-1	71289..71417	-	42	116691336	-	Bcen2424_3230	-	AraC family transcriptional regulator
64	 57.22	-2	71783..73180	+	465	116691337	-	Bcen2424_3232	-	integrase catalytic subunit
65	 59.47	-1	73334..73708	-	124	116691338	-	Bcen2424_3233	-	putative transposase protein
66	 58.25	-2	73762..74070	-	102	116691339	-	Bcen2424_3234	-	transposase IS3/IS911 family protein
67	 65.08	0	74109..74234	+	41	116691340	-	Bcen2424_3235	-	hypothetical protein
68	 68.29	0	74441..75178	-	245	116691341	-	Bcen2424_3236	-	hypothetical protein
69	 68.06	0	75454..76029	-	191	116691342	-	Bcen2424_3237	-	hypothetical protein
70	 63.60	0	76026..76253	-	75	116691343	-	Bcen2424_3238	-	hypothetical protein
71	 57.14	-2	76444..76779	+	111	116691344	-	Bcen2424_3239	-	hypothetical protein
72	 59.38	-1	76866..77222	-	118	116691345	-	Bcen2424_3240	-	hypothetical protein
73	 59.68	-1	77415..78587	-	390	116691346	-	Bcen2424_3241	-	porin
74	 61.26	-1	78662..80011	-	449	116691347	-	Bcen2424_3242	-	major facilitator transporter
75	 59.65	-1	80335..80619	-	94	116691348	-	Bcen2424_3243	-	hypothetical protein
76	 63.70	0	80715..81692	+	325	116691349	-	Bcen2424_3244	-	AraC family transcriptional regulator
77	 63.61	0	81908..84622	+	904	116691350	-	Bcen2424_3245	-	2-oxoacid dehydrogenase subunit E1
78	 65.71	0	84758..86119	+	453	116691351	-	Bcen2424_3246	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
79	 64.37	0	86394..88181	+	595	116691352	-	Bcen2424_3247	-	dihydrolipoamide dehydrogenase
80	 59.20	-1	88337..88939	+	200	116691353	-	Bcen2424_3248	-	AsnC family transcriptional regulator
81	 63.19	0	88962..90110	+	382	116691354	-	Bcen2424_3249	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
82	 61.90	-1	90312..91949	+	545	116691355	-	Bcen2424_3250	-	AMP-dependent synthetase and ligase
83	 62.41	-1	91987..92808	-	273	116691356	-	Bcen2424_3251	-	AraC family transcriptional regulator
84	 62.22	-1	93027..93791	+	254	116691357	-	Bcen2424_3252	-	enoyl-CoA hydratase/isomerase
85	 62.82	0	93794..94573	+	259	116691358	-	Bcen2424_3253	-	creatininase
86	 60.69	-1	94864..96018	+	384	116691359	-	Bcen2424_3254	-	luciferase family protein
87	 61.34	-1	96023..96811	+	262	116691360	-	Bcen2424_3255	-	enoyl-CoA hydratase/isomerase
88	 62.37	-1	96808..98715	+	635	116691361	-	Bcen2424_3256	-	AMP-dependent synthetase and ligase
89	 63.23	0	98806..99387	+	193	116691362	-	Bcen2424_3257	-	flavin reductase domain-containing protein
90	 58.72	-1	99641..101440	+	599	116691363	-	Bcen2424_3258	-	integrase catalytic subunit
91	 57.24	-2	101450..102319	+	289	116691364	-	Bcen2424_3259	-	TniB family protein
92	 59.43	-1	102300..102824	+	174	116691365	-	Bcen2424_3260	-	hypothetical protein
93	 59.36	-1	102833..103174	+	113	116691366	-	Bcen2424_3261	-	hypothetical protein
94	 54.34	-2	103261..103479	-	72	116691367	-	Bcen2424_3262	-	4-oxalocrotonate tautomerase
95	 56.33	-2	103538..104746	-	402	116691368	-	Bcen2424_3263	-	aminotransferase, class I and II
96	 61.44	-1	105127..106236	-	369	116691369	-	Bcen2424_3264	-	NADH:flavin oxidoreductase/NADH oxidase
97	 56.68	-2	106385..107065	-	226	116691370	-	Bcen2424_3265	-	DSBA oxidoreductase
98	 58.77	-1	107135..107476	-	113	116691371	-	Bcen2424_3266	-	alkylhydroperoxidase
99	 59.57	-1	107603..108166	-	187	116691372	-	Bcen2424_3267	-	TetR family transcriptional regulator
100	 59.64	-1	108525..109079	+	184	116691373	-	Bcen2424_3268	-	OsmC family protein
66.92	MEAN

4.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.