IslandPath Analysis: Shewanella baltica OS185



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.95   STD DEV: 3.86
Shewanella baltica OS185, complete genome - 1..5229686
4323 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.35	0	382..1770	+	462	152998556	-	Shew185_0001	-	chromosomal replication initiation protein
2	 44.87	0	1790..2890	+	366	152998557	-	Shew185_0002	-	DNA polymerase III, beta subunit
3	 44.97	0	3092..4174	+	360	152998558	-	Shew185_0003	-	DNA replication and repair protein RecF
4	 46.57	0	4191..6608	+	805	152998559	-	Shew185_0004	-	DNA gyrase, B subunit
5	 48.72	0	6694..7356	-	220	152998560	-	Shew185_0005	-	glutathione S-transferase domain-containing protein
6	 49.19	0	7461..8381	-	306	152998561	-	Shew185_0006	-	urea amidolyase related protein
7	 45.44	0	8715..9755	+	346	152998562	-	Shew185_0007	-	putative signal transduction protein
8	 46.57	0	9843..11912	-	689	152998563	-	Shew185_0008	-	glycyl-tRNA synthetase subunit beta
9	 49.45	0	11923..12828	-	301	152998564	-	Shew185_0009	-	glycyl-tRNA synthetase subunit alpha
10	 44.94	0	12946..13548	+	200	152998565	-	Shew185_0010	-	DNA-3-methyladenine glycosylase I
11	 46.57	0	13745..16933	-	1062	152998566	-	Shew185_0011	-	amidohydrolase
12	 47.65	0	17197..17643	-	148	152998567	-	Shew185_0012	-	hypothetical protein
13	 47.15	0	17691..17936	-	81	152998568	-	Shew185_0013	-	SirA family protein
14	 44.59	0	18106..19269	-	387	152998569	-	Shew185_0014	-	diguanylate cyclase
15	 50.86	+1	19512..20675	-	387	152998570	-	Shew185_0015	-	3-ketoacyl-CoA thiolase
16	 47.84	0	20698..22848	-	716	152998571	-	Shew185_0016	-	multifunctional fatty acid oxidation complex subunit alpha
17	 47.17	0	23339..24661	+	440	152998572	-	Shew185_0017	-	proline dipeptidase
18	 49.27	0	24689..25303	+	204	152998573	-	Shew185_0018	-	hypothetical protein
19	 47.60	0	25381..26838	+	485	152998574	-	Shew185_0019	-	TrkH family potassium uptake protein
20	 44.95	0	26841..27365	+	174	152998575	-	Shew185_0020	-	protoporphyrinogen oxidase
21	 44.66	0	27429..27737	-	102	152998576	-	Shew185_0021	-	regulatory protein ArsR
22	 47.28	0	27938..28489	+	183	152998577	-	Shew185_0022	-	protoporphyrinogen oxidase
23	 49.83	0	28560..30002	-	480	152998578	-	Shew185_0023	-	TrkH family potassium uptake protein
24	 50.71	0	30023..31432	-	469	152998579	-	Shew185_0024	-	potassium transporter peripheral membrane component
25	 50.97	+1	31448..32734	-	428	152998580	-	Shew185_0025	-	sun protein
26	 51.20	+1	32736..33692	-	318	152998581	-	Shew185_0026	-	methionyl-tRNA formyltransferase
27	 44.44	0	33701..34213	-	170	152998582	-	Shew185_0027	-	peptide deformylase
28	 47.13	0	34339..35469	+	376	152998583	-	Shew185_0028	-	peptidoglycan-binding LysM
29	 47.89	0	35553..36569	+	338	152998584	-	Shew185_0029	-	DNA protecting protein DprA
30	 39.87	-1	36572..37045	+	157	152998585	-	Shew185_0030	-	hypothetical protein
31	 46.49	0	37159..37728	+	189	152998586	-	Shew185_0031	-	DNA topoisomerase type IA Zn finger domain-containing protein
32	 47.27	0	37855..38421	+	188	152998587	-	Shew185_0032	-	Sua5/YciO/YrdC/YwlC family protein
33	 50.83	+1	38447..39355	+	302	152998588	-	Shew185_0033	-	coproporphyrinogen III oxidase
34	 44.37	0	39390..39824	-	144	152998589	-	Shew185_0034	-	globin
35	 52.06	+1	39977..40825	+	282	152998590	-	Shew185_0035	-	shikimate 5-dehydrogenase
36	 47.46	0	40831..41106	+	91	152998591	-	Shew185_0036	-	hypothetical protein
37	 46.63	0	41241..41789	-	182	152998592	-	Shew185_0037	-	carbonic anhydrase
38	 48.63	0	47947..48201	+	84	152998593	-	Shew185_0038	-	hypothetical protein
39	 43.64	0	48224..48679	+	151	152998594	-	Shew185_0039	-	BadM/Rrf2 family transcriptional regulator
40	 45.37	0	48654..49409	-	251	152998595	-	Shew185_0040	-	protein of unknown function DUF610 YibQ
41	 47.26	0	49422..50627	-	401	152998596	-	Shew185_0041	-	carboxyl-terminal protease
42	 47.47	0	50660..51748	-	362	152998597	-	Shew185_0042	-	peptidase M23B
43	 50.81	0	51804..53348	-	514	152998598	-	Shew185_0043	-	phosphoglyceromutase
44	 40.89	-1	53601..54050	+	149	152998599	-	Shew185_0044	-	rhodanese domain-containing protein
45	 47.12	0	54346..54831	+	161	152998600	-	Shew185_0045	-	preprotein translocase subunit SecB
46	 51.13	+1	54836..55852	+	338	152998601	-	Shew185_0046	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
47	 52.49	+1	56038..57222	+	394	152998602	-	Shew185_0047	-	hypothetical protein
48	 42.26	-1	57335..59305	-	656	152998603	-	Shew185_0048	-	putative transcriptional regulator
49	 48.75	0	59927..61288	-	453	152998604	-	Shew185_0049	-	TrkH family potassium uptake protein
50	 47.07	0	61290..61988	-	232	152998605	-	Shew185_0050	-	TrkA domain-containing protein
51	 53.19	+1	62033..62722	-	229	152998606	-	Shew185_0051	-	two component transcriptional regulator
52	 47.95	0	62723..63769	-	348	152998607	-	Shew185_0052	-	integral membrane sensor signal transduction histidine kinase
53	 53.25	+1	64040..64963	-	307	152998608	-	Shew185_0053	-	pirin domain-containing protein
54	 49.40	0	65350..67023	+	557	152998609	-	Shew185_0054	-	signal transduction histidine kinase, LytS
55	 47.13	0	67017..67748	+	243	152998610	-	Shew185_0055	-	LytTR family two component transcriptional regulator
56	 49.16	0	67855..69099	+	414	152998611	-	Shew185_0056	-	major facilitator transporter
57	 47.02	0	69234..69971	+	245	152998612	-	Shew185_0057	-	hypothetical protein
58	 48.69	0	70078..70572	+	164	152998613	-	Shew185_0058	-	NLP/P60 protein
59	 52.73	+1	70631..72094	+	487	152998614	-	Shew185_0059	-	major facilitator transporter
60	 48.45	0	72187..73218	+	343	152998615	-	Shew185_0060	-	periplasmic binding protein/LacI transcriptional regulator
61	 50.03	0	73333..74811	-	492	152998616	-	Shew185_0061	-	sucrose phosphorylase
62	 48.81	0	75073..76293	+	406	152998617	-	Shew185_0062	-	major facilitator transporter
63	 48.44	0	76572..78968	+	798	152998618	-	Shew185_0063	-	TonB-dependent receptor
64	 53.33	+1	79088..80047	+	319	152998619	-	Shew185_0064	-	ribokinase-like domain-containing protein
65	 52.06	+1	80302..80835	+	177	152998620	-	Shew185_0065	-	molybdenum cofactor biosynthesis protein
66	 49.28	0	81044..86662	+	1872	152998621	-	Shew185_0066	-	alpha-2-macroglobulin domain-containing protein
67	 50.15	0	86659..88947	+	762	152998622	-	Shew185_0067	-	penicillin-binding protein 1C
68	 42.86	-1	88966..89217	-	83	152998623	-	Shew185_0068	-	hypothetical protein
69	 48.42	0	89325..90464	-	379	152998624	-	Shew185_0069	-	transport protein, putative
70	 51.02	+1	90559..91293	-	244	152998625	-	Shew185_0070	-	ABC transporter related
71	 52.57	+1	91297..92913	-	538	152998626	-	Shew185_0071	-	TAP domain-containing protein
72	 51.88	+1	93007..93378	+	123	152998627	-	Shew185_0072	-	regulatory protein GntR HTH
73	 49.19	0	93432..94295	+	287	152998628	-	Shew185_0073	-	ABC transporter related
74	 49.58	0	94292..95602	+	436	152998629	-	Shew185_0074	-	hypothetical protein
75	 49.39	0	95731..97536	+	601	152998630	-	Shew185_0075	-	AMP-dependent synthetase and ligase
76	 46.55	0	97680..100130	+	816	152998631	-	Shew185_0076	-	MORN repeat-containing protein
77	 47.93	0	100259..100669	+	136	152998632	-	Shew185_0077	-	thioesterase superfamily protein
78	 51.37	+1	100793..101341	+	182	152998633	-	Shew185_0078	-	HPP family protein?
79	 44.32	0	101362..101625	-	87	152998634	-	Shew185_0079	-	hypothetical protein
80	 46.80	0	101688..102140	-	150	152998635	-	Shew185_0080	-	thioesterase superfamily protein
81	 48.99	0	102273..102668	+	131	152998636	-	Shew185_0081	-	glutathione-dependent formaldehyde-activating GFA
82	 49.58	0	102672..103028	+	118	152998637	-	Shew185_0082	-	MerR family transcriptional regulator
83	 51.16	+1	103222..103608	+	128	152998638	-	Shew185_0083	-	carboxymuconolactone decarboxylase
84	 47.46	0	103915..104997	+	360	152998639	-	Shew185_0084	-	hypothetical protein
85	 45.37	0	105093..105773	-	226	152998640	-	Shew185_0085	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
86	 44.07	0	105935..107173	+	412	152998641	-	Shew185_0086	-	hypothetical protein
87	 45.06	0	107377..107811	+	144	152998642	-	Shew185_0087	-	hypothetical protein
88	 44.77	0	107908..108921	+	337	152998643	-	Shew185_0088	-	hypothetical protein
89	 48.74	0	109437..111260	-	607	152998644	-	Shew185_0090	-	glycerophosphoryl diester phosphodiesterase
90	 47.41	0	111479..112096	-	205	152998645	-	Shew185_0091	-	FMN-binding negative transcriptional regulator
91	 44.85	0	112586..113332	+	248	152998646	-	Shew185_0092	-	hypothetical protein
92	 49.38	0	113890..114450	+	186	152998647	-	Shew185_0093	-	MarR family transcriptional regulator
93	 47.28	0	114443..115195	+	250	152998648	-	Shew185_0094	-	siderophore-interacting protein
94	 51.02	+1	115313..116539	-	408	152998649	-	Shew185_0095	-	imidazolonepropionase
95	 51.55	+1	116773..117480	+	235	152998650	-	Shew185_0096	-	GntR family transcriptional regulator
96	 54.32	+1	117636..119303	+	555	152998651	-	Shew185_0097	-	urocanate hydratase
97	 52.20	+1	119356..120897	+	513	152998652	-	Shew185_0098	-	histidine ammonia-lyase
98	 49.92	0	121578..124592	+	1004	152998653	-	Shew185_0099	-	molybdopterin oxidoreductase Fe4S4 region
99	 53.07	+1	124595..125506	+	303	152998654	-	Shew185_0101	-	formate dehydrogenase, beta subunit
100	 48.75	0	125503..126144	+	213	152998655	-	Shew185_0102	-	formate dehydrogenase, gamma subunit
46.95	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.