IslandPath Analysis: Magnetospirillum magneticum AMB-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.55   STD DEV: 4.21
Magnetospirillum magneticum AMB-1, complete genome - 1..4967148
4559 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.40	+1	239..1336	+	365	83309100	-	amb0001	-	GTPase
2	 68.91	0	1352..3265	+	637	83309101	-	amb0002	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3	 64.72	0	3320..3937	+	205	83309102	-	amb0003	-	S-adenosylmethionine-dependent methyltransferase involved in cell division
4	 63.28	0	3918..4715	+	265	83309103	-	amb0004	-	ATPase involved in chromosome partitioning
5	 63.31	0	5702..6118	+	138	83309104	-	amb0005	-	hypothetical protein
6	 68.09	0	6119..6610	+	163	83309105	-	amb0006	-	hypothetical protein
7	 66.67	0	7065..7997	+	310	83309106	-	amb0007	-	thioredoxin domain-containing protein
8	 66.82	0	8006..8665	+	219	83309107	-	amb0008	-	hypothetical protein
9	 64.65	0	8677..8874	+	65	83309108	-	amb0009	-	hypothetical protein
10	 67.78	0	8877..9326	+	149	83309109	-	amb0010	-	hypothetical protein
11	 66.67	0	9333..9806	+	157	83309110	-	amb0011	-	hypothetical protein
12	 69.93	+1	9900..11123	-	407	83309111	-	amb0012	-	2-polyprenyl-6-methoxyphenol hydroxylase
13	 61.65	0	11477..11815	+	112	83309112	-	amb0013	-	nitrogen regulatory protein PII
14	 66.22	0	12202..13551	+	449	83309113	-	amb0014	-	ammonia permease
15	 69.32	0	13972..15063	+	363	83309114	-	amb0015	-	aspartate/tyrosine/aromatic aminotransferase
16	 69.86	+1	15071..17485	+	804	83309115	-	amb0016	-	DNA segregation ATPase FtsK/SpoIIIE
17	 67.12	0	17556..18212	+	218	83309116	-	amb0017	-	Outer membrane lipoprotein-sorting protein
18	 65.03	0	18552..19343	+	263	83309117	-	amb0018	-	exonuclease III
19	 68.38	0	19513..20154	-	213	83309118	-	amb0019	-	response regulator
20	 68.91	0	20317..21429	+	370	83309119	-	amb0020	-	GTP cyclohydrolase II
21	 66.06	0	21454..22608	+	384	83309120	-	amb0021	-	hypothetical protein
22	 65.59	0	22612..23262	-	216	83309121	-	amb0022	-	TIM-barrel fold family protein
23	 70.83	+1	23292..23891	+	199	83309122	-	amb0023	-	thiamine monophosphate synthase
24	 65.88	0	23899..25428	-	509	83309123	-	amb0024	-	TPR repeat-containing protein
25	 65.19	0	25496..26845	-	449	83309124	-	amb0025	-	hypothetical protein
26	 64.04	0	27113..27646	+	177	83309125	-	amb0026	-	hypothetical protein
27	 65.86	0	27722..30310	+	862	83309126	-	amb0027	-	leucyl-tRNA synthetase
28	 60.76	-1	30297..30872	+	191	83309127	-	amb0028	-	hypothetical protein
29	 69.70	0	30869..31891	+	340	83309128	holA	amb0029	-	DNA polymerase III subunit delta
30	 65.15	0	31891..32943	+	350	83309129	-	amb0030	-	hypothetical protein
31	 67.19	0	33060..37871	+	1603	83309130	-	amb0031	-	NAD-specific glutamate dehydrogenase
32	 66.67	0	37904..38482	+	192	83309131	-	amb0032	-	phosphoheptose isomerase
33	 67.21	0	38439..38987	+	182	83309132	-	amb0033	-	hypothetical protein
34	 57.33	-1	38999..39148	+	49	83309133	-	amb0034	-	hypothetical protein
35	 63.35	0	39159..40997	+	612	83309134	-	amb0035	-	carbamoyl transferase
36	 69.64	0	41021..42601	+	526	83309135	-	amb0036	-	hypothetical protein
37	 68.17	0	42589..43983	-	464	83309136	-	amb0037	-	xanthan biosynthesis protein xanB
38	 70.95	+1	43987..44943	-	318	83309137	-	amb0038	-	nucleoside-diphosphate-sugar epimerase
39	 71.96	+1	44940..45941	-	333	83309138	-	amb0039	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase
40	 69.31	0	45968..48127	-	719	83309139	-	amb0040	-	threonine dehydrogenase
41	 67.37	0	48136..48702	-	188	83309140	-	amb0041	-	inhibitor of the KinA pathway to sporulation
42	 69.17	0	48826..50583	+	585	83309141	-	amb0042	-	asparagine synthase
43	 67.27	0	50580..51575	+	331	83309142	-	amb0043	-	hypothetical protein
44	 67.62	0	51572..52408	+	278	83309143	-	amb0044	-	xylanase/chitin deacetylase
45	 68.55	0	52405..53517	+	370	83309144	-	amb0045	-	hypothetical protein
46	 60.52	-1	53514..54716	-	400	83309145	-	amb0046	-	Fe-S oxidoreductase
47	 66.50	0	54903..55520	+	205	83309146	-	amb0047	-	hypothetical protein
48	 65.48	0	55520..56023	+	167	83309147	-	amb0048	-	transcription antitermination protein nusG
49	 63.93	0	56093..56677	+	194	83309148	-	amb0049	-	dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme
50	 62.02	0	56681..57454	+	257	83309149	-	amb0050	-	hypothetical protein
51	 63.09	0	57432..58802	+	456	83309150	-	amb0051	-	SAM-dependent methyltransferase
52	 66.67	0	58799..59899	+	366	83309151	-	amb0052	-	pyridoxal phosphate-dependent enzyme
53	 64.57	0	59892..60560	+	222	83309152	-	amb0053	-	acetyltransferase
54	 61.20	-1	60553..61668	+	371	83309153	-	amb0054	-	pyridoxal phosphate-dependent enzyme apparently
55	 62.17	0	61665..62087	+	140	83309154	-	amb0055	-	hypothetical protein
56	 61.69	0	62084..63028	+	314	83309155	-	amb0056	-	nucleoside-diphosphate-sugar epimerase
57	 63.29	0	63025..64062	+	345	83309156	-	amb0057	-	glycosyltransferase
58	 63.99	0	64070..65188	+	372	83309157	-	amb0058	-	dTDP-D-glucose 4,6-dehydratase
59	 64.31	0	65185..66075	+	296	83309158	-	amb0059	-	dTDP-glucose pyrophosphorylase
60	 61.77	0	66072..67868	+	598	83309159	-	amb0060	-	ABC-type multidrug transport system
61	 62.67	0	67881..68906	+	341	83309160	-	amb0061	-	UDP-glucose 4-epimerase
62	 59.79	-1	68925..70481	+	518	83309161	-	amb0062	-	ADP-heptose synthase
63	 61.46	0	70478..71494	+	338	83309162	-	amb0063	-	nucleoside-diphosphate-sugar epimerase
64	 66.50	0	71505..72116	+	203	83309163	-	amb0064	-	hypothetical protein
65	 65.63	0	72091..73149	+	352	83309164	-	amb0065	-	hypothetical protein
66	 63.95	0	73121..74005	+	294	83309165	-	amb0066	-	putative transketolase N-terminal section
67	 65.80	0	74005..74922	+	305	83309166	-	amb0067	-	putative transketolase C-terminal section
68	 65.68	0	74922..75731	+	269	83309167	-	amb0068	-	hypothetical protein
69	 61.73	0	75731..76135	+	134	83309168	-	amb0069	-	hypothetical protein
70	 61.13	-1	76111..77175	+	354	83309169	-	amb0070	-	Fe-S oxidoreductase
71	 58.22	-1	77185..77847	+	220	83309170	-	amb0071	-	SAM-dependent methyltransferase
72	 53.89	-2	79233..80210	+	325	83309171	-	amb0072	-	Fe-S oxidoreductase
73	 62.60	0	80212..82155	+	647	83309172	-	amb0073	-	pyruvate/2-oxoglutarate dehydrogenase complex
74	 61.28	-1	82152..83264	+	370	83309173	-	amb0074	-	acetyltransferase
75	 60.05	-1	83377..84480	+	367	83309174	-	amb0075	-	pyridoxal phosphate-dependent enzyme
76	 59.58	-1	84493..84972	+	159	83309175	-	amb0076	-	hypothetical protein
77	 65.39	0	84976..85995	+	339	83309176	-	amb0077	-	nucleoside-diphosphate-sugar epimerase
78	 68.94	0	86013..87155	+	380	83309177	-	amb0078	-	pyridoxal phosphate-dependent enzyme
79	 65.98	0	87152..88324	+	390	83309178	-	amb0079	-	UDP-N-acetylglucosamine 2-epimerase
80	 67.52	0	88329..89381	+	350	83309179	-	amb0080	-	sialic acid synthase
81	 68.83	0	89378..90535	+	385	83309180	-	amb0081	-	SAM-dependent methyltransferase
82	 65.55	0	90539..91252	+	237	83309181	-	amb0082	-	histidinol phosphatase
83	 66.67	0	91249..92289	+	346	83309182	-	amb0083	-	putative carbamoyl phosphate synthase large subunit
84	 69.68	0	92286..93182	+	298	83309183	-	amb0084	-	nucleoside-diphosphate-sugar epimerase
85	 62.10	0	93179..94228	+	349	83309184	-	amb0085	-	nucleoside-diphosphate-sugar pyrophosphorylase
86	 59.15	-1	94326..96215	+	629	83309185	-	amb0086	-	Fe-S oxidoreductase
87	 64.37	0	96266..98272	+	668	83309186	-	amb0087	-	hypothetical protein
88	 65.67	0	98272..98976	+	234	83309187	-	amb0088	-	CMP-N-acetylneuraminic acid synthetase
89	 59.45	-1	99030..100166	+	378	83309188	-	amb0089	-	Fe-S oxidoreductase
90	 64.23	0	100163..100942	+	259	83309189	-	amb0090	-	flagellin modification protein A
91	 65.93	0	100939..101616	+	225	83309190	-	amb0091	-	CMP-N-acetylneuraminic acid synthetase
92	 64.04	0	101627..103873	+	748	83309191	-	amb0092	-	sialic acid synthase
93	 60.39	-1	103864..104850	+	328	83309192	-	amb0093	-	hypothetical protein
94	 61.69	0	104855..106342	+	495	83309193	-	amb0094	-	poly(beta-D-mannuronate) O-acetylase
95	 62.50	0	106299..107186	+	295	83309194	-	amb0095	-	SAM-dependent methyltransferase
96	 57.95	-1	107213..108118	-	301	83309195	-	amb0096	-	glycosyltransferase
97	 56.26	-2	108743..110596	+	617	83309196	-	amb0097	-	hypothetical protein
98	 65.85	0	110651..112477	-	608	83309197	-	amb0098	-	hypothetical protein
99	 67.22	0	112551..114548	+	665	83309198	-	amb0099	-	nucleoside-diphosphate sugar epimerase
100	 68.23	0	114490..116154	+	554	83309199	purH	amb0100	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
65.55	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.