IslandPath Analysis: Methanocaldococcus jannaschii DSM 2661



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.48   STD DEV: 3.24
Methanocaldococcus jannaschii DSM 2661 extrachromosomal, complete genome - 1..16550
12 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 25.39	0	429..1259	-	276	10954533	-	MJECS01	-	hypothetical protein
2	 28.09	0	1269..4814	-	1181	10954534	-	MJECS02	-	hypothetical protein
3	 26.61	0	4848..5174	-	108	10954535	-	MJECS03	-	hypothetical protein
4	 23.04	-1	5456..5863	-	135	10954536	-	MJECS04	-	hypothetical protein
5	 31.26	0	6383..6817	+	144	10954537	-	MJECS05	-	hypothetical protein
6	 30.73	0	7006..7428	-	140	10954538	-	MJECS06	-	hypothetical protein
7	 33.56	+1	7425..8750	-	441	10954539	-	MJECS07	-	hypothetical protein
8	 33.24	+1	8735..11929	-	1064	10954540	-	MJECS08	-	hypothetical protein
9	 27.59	0	11922..12635	-	237	10954541	-	MJECS09	-	hypothetical protein
10	 25.32	0	13178..14038	-	286	10954542	-	MJECS10	-	hypothetical protein
11	 28.01	0	14527..15033	+	168	161579527	-	MJECS11	-	hypothetical protein
12	 28.89	0	15408..63	-	401	18677783	-	MJ_ECS12	-	putative transglutaminase-like protease
28.48	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.