IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.09   STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.33	0	1..1605	+	534	192359033	dnaA	CJA_0001	-	chromosomal replication initiator protein DnaA
2	 49.91	0	1676..2779	+	367	192362292	dnaN	CJA_0002	-	DNA polymerase III, beta subunit
3	 47.91	0	2813..3910	+	365	192361120	recF	CJA_0003	-	RecF protein
4	 53.53	0	3980..6400	+	806	192360461	gyrB	CJA_0004	-	DNA gyrase, B subunit
5	 54.60	0	6530..6703	+	57	192361286	-	CJA_0005	-	hypothetical protein
6	 57.47	0	6857..9640	-	927	192362495	amy13G	CJA_0006	-	alpha-amylase, putative, amy13G
7	 56.65	0	10299..12284	+	661	192359692	cbp2A	CJA_0007	-	carbohydrate binding protein, cbp2A
8	 55.06	0	12342..13754	-	470	192359975	-	CJA_0008	-	transcriptional regulatory protein
9	 53.29	0	14174..15616	+	480	192361588	nrtA	CJA_0009	-	ABC transporter nitrate-binding protein
10	 52.42	0	15619..16446	+	275	192360346	-	CJA_0010	-	possible nitrate transport system permease protein
11	 53.49	0	16451..17368	+	305	192359310	nrtC	CJA_0011	-	ABC transporter ATP-binding protein
12	 49.66	0	17380..17820	+	146	192358853	cynS	CJA_0012	-	cyanate hydratase
13	 55.70	0	17829..18284	+	151	192362051	-	CJA_0013	-	hypothetical protein
14	 42.52	-1	18486..19334	+	282	192361417	-	CJA_0014	-	hypothetical protein
15	 34.86	-2	19321..20169	+	282	192359834	-	CJA_0015	-	transglutaminase-like superfamily protein
16	 46.81	0	20181..32762	+	4193	192359249	-	CJA_0016	-	Fibronectin type III domain protein
17	 42.80	-1	32831..37036	+	1401	192362442	-	CJA_0017	-	Rhsfamily protein
18	 42.28	-1	37736..39121	+	461	192362072	-	CJA_0018	-	Rhs family protein
19	 46.22	-1	39679..44271	+	1530	192361868	cbp35A	CJA_0020	-	carbohydrate binding protein, putative, cbp35A
20	 42.08	-1	44250..44432	-	60	192359334	-	CJA_0019	-	hypothetical protein
21	 53.87	0	44404..45153	-	249	192359609	-	CJA_0021	-	hypothetical protein
22	 57.26	0	45153..45524	-	123	192360422	-	CJA_0022	-	hypothetical protein
23	 50.82	0	45586..46134	-	182	192361315	-	CJA_0023	-	transcriptional regulator, AsnC family
24	 50.30	0	46125..48146	+	673	192361320	leuA	CJA_0024	-	2-isopropylmalate synthase
25	 52.77	0	48661..50883	+	740	192362130	-	CJA_0025	-	catalase/peroxidase HPI
26	 45.00	-1	51040..51159	-	39	192360170	-	CJA_0026	-	hypothetical protein
27	 49.31	0	51333..52565	+	410	192360827	-	CJA_0027	-	putative ABC transporter, permease protein
28	 49.09	0	52577..53845	+	422	192359636	-	CJA_0028	-	putative ABC transporter, ATP-binding protein
29	 48.91	0	54270..55001	+	243	192362401	-	CJA_0029	-	ABC transporter, ATP-binding protein
30	 52.51	0	55008..56243	+	411	192359330	-	CJA_0030	-	efflux ABC transporter, permease protein
31	 50.00	0	56240..57511	+	423	192360390	-	CJA_0031	-	putative ABC transporter, permease protein
32	 48.51	0	57563..58636	+	357	192360388	-	CJA_0032	-	membrane fusion efflux protein
33	 50.28	0	58696..59415	-	239	192361950	-	CJA_0033	-	putative lipoprotein
34	 47.62	0	59412..59516	-	34	192359132	-	CJA_0034	-	hypothetical protein
35	 55.23	0	59663..60580	+	305	192359742	-	CJA_0035	-	MltA-interacting protein MipA superfamily
36	 58.88	+1	60672..60992	+	106	192359946	-	CJA_0036	-	hypothetical protein
37	 55.08	0	61017..61715	+	232	192360772	rstA	CJA_0037	-	response regulator (activator) in two-component regulatory system with RstB (OmpR family)
38	 56.17	0	61725..63020	+	431	192362479	-	CJA_0038	-	putative two-component regulatory system, sensor kinase protein
39	 40.18	-2	63639..66575	+	978	192361520	-	CJA_0039	-	putative TonB dependent receptor
40	 43.75	-1	66626..69418	+	930	192359325	-	CJA_0040	-	pectin methylesterase, putative, ce8
41	 48.00	0	69515..72958	+	1147	192361119	pme8A	CJA_0041	-	pectin methylesterase, putative, pme8A
42	 48.63	0	73344..76232	+	962	192361437	pel1D	CJA_0042	-	pectate lyase, putative, pel1D
43	 46.39	-1	76397..80326	+	1309	192362260	-	CJA_0043	-	pectin methylesterase, putative, ce8
44	 45.68	-1	80421..83069	+	882	192358998	pel1C	CJA_0044	-	pectate lyase, putative, pel1C
45	 49.81	0	83436..85286	+	616	192360569	pel1F	CJA_0045	-	pectate lyase, putative, pel1F
46	 57.04	0	86121..88946	+	941	192360945	-	CJA_0046	-	NADH dehydrogenase subunit 5
47	 60.53	+1	88946..89320	+	124	192361903	-	CJA_0047	-	pH adaptation potassium efflux system C transmembrane protein
48	 60.70	+1	89317..90825	+	502	192361006	-	CJA_0048	-	PhaD protein
49	 55.13	0	90859..91404	+	181	192361666	-	CJA_0049	-	PhaE protein
50	 52.59	0	91386..91655	+	89	192360408	-	CJA_0050	-	PhaF protein
51	 56.67	0	91665..91994	+	109	192361454	-	CJA_0051	-	pH adaptation potassium efflux system protein G
52	 62.25	+1	92074..94611	-	845	192361234	cadA-1	CJA_0052	-	cadmium translocating P-type ATPase
53	 52.23	0	95000..97042	+	680	192362271	pel1E	CJA_0053	-	pectate lyase, putative, pel1E
54	 49.72	0	97165..97890	-	241	192358873	uvs118	CJA_0054	-	Uvs118
55	 53.95	0	97906..98589	-	227	192360186	uvs117	CJA_0055	-	Uvs117
56	 53.15	0	98641..100719	-	692	192359481	glyS	CJA_0056	-	glycyl-tRNA synthetase, beta subunit
57	 56.48	0	100719..101690	-	323	192358918	glyQ	CJA_0057	-	glycyl-tRNA synthetase, alpha subunit
58	 50.62	0	101967..102533	+	188	192361328	uvs112	CJA_0058	-	Uvs112
59	 54.81	0	102734..103408	-	224	192358795	-	CJA_0059	-	hypothetical protein
60	 59.52	+1	103538..104446	+	302	192361883	uvs111	CJA_0060	-	Uvs111
61	 54.81	0	104630..105430	+	266	192358937	uvs110	CJA_0061	-	Uvs110
62	 57.00	0	105463..107013	+	516	192359668	-	CJA_0062	-	Gonadoliberin III-related protein
63	 56.41	0	107010..108023	+	337	192360586	-	CJA_0063	-	alpha-L-glutamate ligase homolog
64	 48.23	0	108133..108696	+	187	192361357	-	CJA_0064	-	putative OmpA-like transmembrane domain
65	 48.55	0	108696..108971	+	91	192362168	-	CJA_0065	-	hypothetical protein
66	 57.76	+1	109049..110407	+	452	192359211	gt4G	CJA_0066	-	glycosyl transferase, putative, gt4G
67	 51.60	0	110394..111143	+	249	192359996	-	CJA_0067	-	Cyclopropane-fatty-acyl-phospholipid synthase
68	 51.91	0	111140..112210	+	356	192359145	-	CJA_0068	-	hypothetical protein
69	 52.20	0	112213..112938	+	241	192360419	-	CJA_0070	-	conserved hypothetical protein TIGR00046
70	 56.70	0	112935..113285	-	116	192359713	-	CJA_0069	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
71	 55.93	0	113367..113981	-	204	192361702	-	CJA_0071	-	putative lipoprotein
72	 58.33	+1	114019..114498	-	159	192360872	-	CJA_0072	-	hypothetical protein
73	 61.78	+1	114520..115419	-	299	192360132	cheB	CJA_0073	-	protein-glutamate methylesterase CheB
74	 59.11	+1	115439..122449	-	2336	192362211	pilL	CJA_0074	-	type IV pili sensor histidine kinase/response regulator PilL
75	 53.79	0	122459..123382	-	307	192361287	pilK	CJA_0075	-	type IV pili chemotactic methyltransferase PilK
76	 57.76	+1	123436..125601	-	721	192362120	pilJ	CJA_0076	-	twitching motility protein PilJ
77	 58.85	+1	125707..126282	-	191	192361294	pilI	CJA_0077	-	Protein pilI
78	 53.99	0	126372..126734	-	120	192360647	pilH	CJA_0078	-	twitching motility protein PilH
79	 51.45	0	126719..126856	-	45	192361353	-	CJA_0079	-	hypothetical protein
80	 49.49	0	126864..127259	-	131	192359101	pilG	CJA_0080	-	twitching motility protein PilG - Pseudomonas aeruginosa
81	 58.07	+1	127605..128558	+	317	192361999	gshB	CJA_0081	-	glutathione synthase
82	 55.11	0	128581..129480	+	299	192360689	-	CJA_0082	-	TonB family C-terminal domain protein
83	 53.33	0	129498..130142	+	214	192359838	-	CJA_0083	-	Uncharacterized ACR
84	 56.48	0	130146..130577	+	143	192359483	-	CJA_0084	-	conserved hypothetical protein TIGR00250
85	 49.54	0	130589..130915	-	108	192362465	-	CJA_0085	-	Domain of unknown function (DUF1508) family
86	 54.97	0	130948..132093	-	381	192361321	pilU	CJA_0086	-	twitching motility protein PilU
87	 56.71	0	132115..133149	-	344	192362112	pilT	CJA_0087	-	twitching motility protein
88	 58.74	+1	133093..133899	+	268	192361248	-	CJA_0088	-	conserved hypothetical protein TIGR00044
89	 59.61	+1	133949..134770	+	273	192360538	proC	CJA_0089	-	pyrroline-5-carboxylate reductase
90	 55.15	0	134794..135375	+	193	192359255	-	CJA_0090	-	YGGT family protein
91	 55.23	0	135376..135681	+	101	192362044	-	CJA_0091	-	conserved hypothetical protein TIGR00251
92	 58.26	+1	135849..137870	+	673	192360981	-	CJA_0092	-	hypothetical protein
93	 55.56	0	137928..138107	-	59	192359895	-	CJA_0093	-	Tetraacyldisaccharide-1-P 4-kinase
94	 49.66	0	138199..138639	-	146	192358892	-	CJA_0094	-	Excinuclease ATPase subunit
95	 54.85	0	138686..139108	-	140	192359787	-	CJA_0095	-	hypothetical protein
96	 60.81	+1	139105..139923	-	272	192358985	-	CJA_0096	-	hypothetical protein
97	 60.68	+1	139923..141107	-	394	192359537	-	CJA_0097	-	Beta-ketoacyl synthase
98	 55.81	0	141070..141999	-	309	192362460	-	CJA_0098	-	acyltransferase
99	 61.46	+1	142293..143675	-	460	192359138	pigH	CJA_0099	-	AMP-ligase
100	 53.69	0	143687..144295	-	202	192359276	-	CJA_0100	-	ketosynthase
52.09	MEAN

5.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.