IslandPath Analysis: Bradyrhizobium sp. BTAi1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.09   STD DEV: 3.41
Bradyrhizobium sp. BTAi1, complete genome - 1..8264687
7394 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.51	0	571..1998	+	475	148251627	dnaA	BBta_0001	-	chromosomal replication initiation protein
2	 66.04	0	2294..3412	+	372	148251628	dnaN	BBta_0002	-	DNA polymerase III subunit beta
3	 56.25	-2	3484..3771	+	95	148251629	-	BBta_0003	-	excinuclease ABC subunit C
4	 70.54	+1	3835..4971	+	378	148251630	recF	BBta_0004	-	recombination protein F
5	 59.95	-1	5084..5455	+	123	148251631	-	BBta_0005	-	putative transposase
6	 62.57	0	5491..5856	+	121	148251632	-	BBta_0006	-	putative transposase
7	 70.37	+1	5840..8083	+	747	148251633	-	BBta_0007	-	hypothetical protein
8	 64.86	0	8418..10856	+	812	148251634	gyrB	BBta_0008	-	DNA gyrase subunit B
9	 54.74	-2	10897..11634	+	245	148251635	-	BBta_0009	-	hypothetical protein
10	 62.17	0	11652..12029	-	125	148251636	-	BBta_0010	-	hypothetical protein
11	 69.21	+1	12179..13474	+	431	148251637	murA	BBta_0011	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
12	 63.12	0	13615..14094	+	159	148251638	-	BBta_0012	-	hypothetical protein
13	 65.98	0	14251..14688	-	145	148251639	-	BBta_0013	-	GNAT family acetyltransferase
14	 68.55	+1	15547..16929	+	460	148251640	-	BBta_0014	-	putative multidrug resistance protein norM
15	 71.39	+1	16935..18077	-	380	148251641	-	BBta_0015	-	hypothetical protein
16	 67.10	0	18198..19568	+	456	148251642	-	BBta_0016	-	hypothetical protein
17	 68.30	0	19577..20983	-	468	148251643	-	BBta_0017	-	putative 6-aminohexanoate-dimer hydrolase
18	 68.43	0	21125..22201	-	358	148251644	-	BBta_0018	-	AraC family transcriptional regulator
19	 66.88	0	22342..23259	+	305	148251645	-	BBta_0019	-	putative Pirin family protein
20	 66.12	0	23302..24216	+	304	148251646	-	BBta_0020	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
21	 59.84	-1	24573..24938	-	121	148251647	-	BBta_0022	-	hypothetical protein
22	 63.33	0	25173..25652	+	159	148251648	-	BBta_0023	-	AsnC family transcriptional regulator
23	 64.90	0	25872..26549	-	225	148251649	-	BBta_0024	-	hypothetical protein
24	 67.42	0	26671..27330	-	219	148251650	-	BBta_0025	-	putative haloacid dehalogenase-like hydrolase family protein
25	 60.14	-1	27393..28097	-	234	148251651	-	BBta_0026	-	uridine kinase
26	 66.44	0	28209..29072	-	287	148251652	-	BBta_0027	-	putative aspartate/ornithine carbamoyltransferase family protein
27	 66.76	0	29208..30296	+	362	148251653	-	BBta_0028	-	putative mandelate racemase/muconate lactonizing family protein
28	 67.62	0	30314..30943	-	209	148251654	-	BBta_0029	-	putative glutathione S-transferase
29	 67.76	0	31212..33416	+	734	148251655	-	BBta_0030	-	sulfate transporter
30	 62.10	0	33663..34253	+	196	148251656	-	BBta_0031	-	hypothetical protein
31	 67.33	0	34256..35752	-	498	148251657	gabD	BBta_0032	-	succinate semialdehyde dehydrogenase
32	 66.67	0	35921..36241	-	106	148251658	-	BBta_0034	-	hypothetical protein
33	 66.42	0	36589..37782	+	397	148251659	-	BBta_0035	-	putative beta-lactamase
34	 65.77	0	37936..38937	-	333	148251660	-	BBta_0036	-	pfkB family carbohydrate kinase
35	 69.30	+1	39008..40564	+	518	148251661	-	BBta_0037	-	putative virulence factor MviN-like protein
36	 61.35	-1	40614..41666	+	350	148251662	trpS	BBta_0038	-	tryptophanyl-tRNA synthetase
37	 67.88	0	41799..42293	+	164	148251663	-	BBta_0039	-	hypothetical protein
38	 63.51	0	42402..42971	+	189	148251664	-	BBta_0040	-	putative nifU protein
39	 66.04	0	43038..43355	-	105	148251665	-	BBta_0041	-	hypothetical protein
40	 69.23	+1	43609..44310	+	233	148251666	-	BBta_0042	-	putative glycoprotease family protein
41	 63.15	0	44307..44789	+	160	148251667	-	BBta_0043	-	putative ribosomal-protein-alanine acetyltransferase, RimI-like protein
42	 62.47	0	44833..45285	+	150	148251668	-	BBta_0044	-	ferric uptake regulator family protein
43	 65.67	0	45295..45993	+	232	148251669	-	BBta_0045	-	putative haloacid dehalogenase-like hydrolase
44	 65.24	0	46049..47449	+	466	148251670	-	BBta_0046	-	hypothetical protein
45	 67.53	0	47454..48491	+	345	148251671	-	BBta_0047	-	putative phosphate starvation-inducible protein, PhoH-like protein
46	 65.88	0	48557..49066	+	169	148251672	-	BBta_0048	-	hypothetical protein
47	 68.22	0	49069..50229	+	386	148251673	-	BBta_0049	-	transporter
48	 64.93	0	50226..51836	+	536	148251674	lnt	BBta_0050	-	apolipoprotein N-acyltransferase
49	 56.83	-2	52070..52486	+	138	148251675	-	BBta_0051	-	XRE family transcriptional regulator
50	 64.01	0	52992..54122	+	376	148251676	-	BBta_0052	-	M20 family peptidase
51	 61.90	0	54119..54853	+	244	148251677	trmB	BBta_0053	-	tRNA (guanine-N(7))-methyltransferase
52	 67.85	0	55461..56222	+	253	148251678	-	BBta_0054	-	hypothetical protein
53	 67.10	0	56237..57850	+	537	148251679	nusA	BBta_0055	-	transcription elongation factor NusA
54	 65.55	0	57920..58633	+	237	148251680	-	BBta_0056	-	hypothetical protein
55	 69.02	+1	58710..61475	+	921	148251681	infB	BBta_0057	-	translation initiation factor IF-2
56	 61.87	0	61638..62054	+	138	148251682	rbfA	BBta_0058	-	ribosome-binding factor A
57	 66.03	0	62054..63154	+	366	148251683	truB	BBta_0059	-	tRNA pseudouridine synthase B
58	 60.00	-1	63157..63426	+	89	148251684	rpsO	BBta_0060	-	30S ribosomal protein S15
59	 65.14	0	63789..65951	+	720	148251685	pnp	BBta_0062	-	polynucleotide phosphorylase/polyadenylase
60	 65.82	0	66159..66632	+	157	148251686	-	BBta_0063	-	hypothetical protein
61	 65.00	0	66748..67587	+	279	148251687	-	BBta_0064	-	hypothetical protein
62	 65.56	0	67655..68470	+	271	148251688	-	BBta_0065	-	hypothetical protein
63	 65.67	0	68594..69394	-	266	148251689	fabI	BBta_0066	-	enoyl-[acyl-carrier-protein] reductase [NADH]
64	 56.94	-2	69449..69520	-	23	148251690	-	BBta_0067	-	hypothetical protein
65	 64.75	0	69536..70735	-	399	148251691	fabB	BBta_0068	-	3-oxoacyl-(acyl carrier protein) synthase I
66	 62.64	0	70836..71357	-	173	148251692	fabA	BBta_0069	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
67	 63.45	0	71793..72290	+	165	148251693	-	BBta_0071	-	ferric uptake regulator family protein
68	 63.77	0	72414..72827	-	137	148251694	-	BBta_0072	-	hypothetical protein
69	 65.97	0	73301..74302	+	333	148251695	-	BBta_0073	-	putative glyoxylate reductase
70	 65.92	0	74517..75320	-	267	148251696	-	BBta_0074	-	putative molybdopterin biosynthesis protein moeB
71	 70.14	+1	75462..76841	+	459	148251697	-	BBta_0075	-	peptidoglycan binding domain-containing protein
72	 64.89	0	76871..77656	+	261	148251698	-	BBta_0076	-	hypothetical protein
73	 66.79	0	78085..78888	+	267	148251699	-	BBta_0077	-	hypothetical protein
74	 65.20	0	79248..79997	+	249	148251700	-	BBta_0078	-	hypothetical protein
75	 64.71	0	79992..80501	-	169	148251701	-	BBta_0079	-	hypothetical protein
76	 67.35	0	80573..81454	-	293	148251702	mutM	BBta_0080	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
77	 63.12	0	81560..82321	+	253	148251703	ubiE	BBta_0081	-	ubiquinone/menaquinone biosynthesis methyltransferase
78	 68.70	+1	82318..83892	+	524	148251704	ubiB	BBta_0082	-	2-octaprenylphenol hydroxylase
79	 70.45	+1	84088..85515	+	475	148251705	coaBC	BBta_0083	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
80	 69.93	+1	85512..85970	+	152	148251706	dut	BBta_0084	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
81	 68.14	0	86159..88666	+	835	148251707	-	BBta_0085	-	putative sensor histidine kinase
82	 68.76	+1	88663..90192	+	509	148251708	-	BBta_0086	-	hypothetical protein
83	 65.03	0	90484..90789	+	101	148251709	-	BBta_0087	-	hypothetical protein
84	 67.77	0	90938..91660	+	240	148251710	-	BBta_0088	-	putative nucleotidyl transferase family protein
85	 70.51	+1	91842..94988	+	1048	148251711	-	BBta_0089	-	DNA helicase/exodeoxyribonuclease V, subunit B
86	 68.80	+1	94985..98455	+	1156	148251712	-	BBta_0090	-	DNA helicase/exodeoxyribonuclease V, subunit A
87	 62.93	0	98557..98877	+	106	148251713	trxA	BBta_0091	-	thioredoxin 1, redox factor
88	 66.57	0	99021..100034	+	337	148251714	ligC	BBta_0092	-	ATP-dependent DNA ligase
89	 66.94	0	100037..100777	-	246	148251715	-	BBta_0093	-	hypothetical protein
90	 66.89	0	100790..102133	-	447	148251716	-	BBta_0094	-	putative folC protein
91	 65.81	0	102130..103068	-	312	148251717	accD	BBta_0095	-	acetyl-CoA carboxylase subunit beta
92	 68.46	0	103163..103999	-	278	161763536	trpA	BBta_0096	-	tryptophan synthase subunit alpha
93	 65.11	0	103996..105219	-	407	148251719	trpB	BBta_0097	-	tryptophan synthase subunit beta
94	 66.67	0	105216..105875	-	219	148251720	trpF	BBta_0098	-	N-(5'-phosphoribosyl)anthranilate isomerase
95	 66.16	0	105954..106346	-	130	148251721	-	BBta_0099	-	hypothetical protein
96	 64.42	0	106425..106736	-	103	148251722	ihfB	BBta_0101	-	integration host factor subunit beta
97	 65.75	0	106906..107886	-	326	148251723	-	BBta_0102	-	S49 family peptidase
98	 62.63	0	108117..109826	-	569	148251724	rpsA	BBta_0103	-	30S ribosomal protein S1
99	 68.86	+1	110077..110715	-	212	148251725	cmk	BBta_0104	-	cytidylate kinase
100	 69.73	+1	110712..112049	-	445	148251726	aroA	BBta_0105	-	3-phosphoshikimate 1-carboxyvinyltransferase
65.09	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.