IslandPath Analysis: Methanobrevibacter smithii ATCC 35061



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.84   STD DEV: 3.62
Methanobrevibacter smithii ATCC 35061, complete genome - 1..1853160
1793 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.16	-1	114..1697	-	527	148642061	-	Msm_0001	-	exoribonuclease VII, large subunit, XseA
2	 32.04	0	2073..3152	+	359	148642062	-	Msm_0002	-	integrase-recombinase protein
3	 33.10	0	3904..4335	-	143	148642063	-	Msm_0003	-	hypothetical protein
4	 35.54	+1	4423..4965	-	180	148642064	-	Msm_0004	-	lysine decarboxylase
5	 26.51	-1	5005..5253	-	82	148642065	-	Msm_0005	-	hypothetical protein
6	 28.79	0	5240..5371	-	43	148642066	-	Msm_0006	-	hypothetical protein
7	 32.81	0	5560..5943	-	127	148642067	-	Msm_0007	-	SAM-dependent methyltransferase
8	 26.37	-1	6134..7339	+	401	148642068	-	Msm_0008	-	putative transposase
9	 30.05	0	7342..7767	-	141	148642069	-	Msm_0009	-	hypothetical protein
10	 28.99	0	7976..8551	+	191	148642070	-	Msm_0010	-	GNAT family N-acetyltransferase
11	 29.61	0	8560..9069	-	169	148642071	-	Msm_0011	-	hypothetical protein
12	 23.30	-2	9331..10137	-	268	148642072	-	Msm_0012	-	hypothetical protein
13	 30.18	0	10652..10936	-	94	148642073	-	Msm_0013	-	hypothetical protein
14	 22.45	-2	11089..11382	-	97	148642074	-	Msm_0014	-	putative heat shock related protein
15	 26.52	-1	11425..11967	+	180	148642075	-	Msm_0015	-	hypothetical protein
16	 35.98	+1	11983..12246	+	87	148642076	-	Msm_0016	-	hypothetical protein
17	 22.22	-2	12300..12551	+	83	148642077	-	Msm_0017	-	hypothetical protein
18	 35.61	+1	12548..12811	+	87	148642078	-	Msm_0018	-	hypothetical protein
19	 21.14	-2	13129..13251	+	40	148642079	-	Msm_0019	-	hypothetical protein
20	 27.99	-1	13349..13666	-	105	148642080	-	Msm_0020	-	O-linked GlnNAc transferase
21	 33.70	0	14122..14931	+	269	148642081	-	Msm_0021	-	short chain dehydrogenase (7-alpha-hydroxysteroid dehydrogenase)
22	 21.84	-2	15009..15182	-	57	148642082	-	Msm_0022	-	hypothetical protein
23	 24.48	-2	15370..16374	-	334	148642083	-	Msm_0023	-	hypothetical protein
24	 19.20	-2	16371..16646	-	91	148642084	-	Msm_0024	-	hypothetical protein
25	 34.61	0	17174..18820	-	548	148642085	-	Msm_0025	-	acyl-CoA synthetase
26	 32.99	0	18844..19425	-	193	148642086	-	Msm_0026	-	transcriptional regulator
27	 34.55	0	19640..21277	-	545	148642087	-	Msm_0027	-	glutamate synthase domain-containing protein
28	 29.19	0	21411..22013	+	200	148642088	-	Msm_0028	-	SAM-dependent methyltransferase
29	 32.27	0	22321..22980	-	219	148642089	-	Msm_0029	-	putative calcium-binding protein
30	 32.61	0	23135..23689	-	184	148642090	-	Msm_0030	-	hypothetical protein
31	 33.99	0	23791..24855	-	354	148642091	-	Msm_0031	-	adhesin-like protein
32	 22.81	-2	24986..25099	-	37	148642092	-	Msm_0032	-	hypothetical protein
33	 31.76	0	25224..26174	+	316	148642093	-	Msm_0033	-	ketopantoate reductase, ApbA
34	 29.46	0	26171..26506	-	111	148642094	-	Msm_0034	-	hypothetical protein
35	 32.82	0	26519..27097	-	192	148642095	-	Msm_0035	-	hypothetical protein
36	 27.38	-1	27314..28018	-	234	148642096	-	Msm_0036	-	hypothetical protein
37	 31.00	0	28082..28510	+	142	148642097	-	Msm_0037	-	hypothetical protein
38	 23.52	-2	29048..29536	+	162	148642098	-	Msm_0038	-	hypothetical protein
39	 27.70	-1	30032..30475	+	147	148642099	-	Msm_0039	-	hypothetical protein
40	 29.67	0	30477..30749	+	90	148642100	-	Msm_0040	-	hypothetical protein
41	 29.35	0	30744..31019	-	91	148642101	-	Msm_0041	-	hypothetical protein
42	 32.78	0	31030..31209	-	59	148642102	-	Msm_0042	-	hypothetical protein
43	 32.82	0	31292..32077	+	261	148642103	-	Msm_0043	-	peptide methionine sulfoxide reductase, PMSR (protein repair; stress)
44	 32.90	0	32058..33221	-	387	148642104	-	Msm_0044	-	PLP dependent aminotransferase (aspartate)
45	 35.51	+1	33413..34285	-	290	148642105	-	Msm_0045	-	nucleotide-binding protein (putative ATPase involved in chromosome partitioning)
46	 34.76	0	34366..35700	-	444	148642106	-	Msm_0046	-	NADH oxidase
47	 28.87	0	35826..36452	+	208	148642107	-	Msm_0047	-	chloramphenicol O-acetyltransferase
48	 32.12	0	36436..36765	-	109	148642108	-	Msm_0048	-	hypothetical protein
49	 34.51	0	36795..37475	-	226	148642109	-	Msm_0049	-	F420-dependent NADP oxidoreductase, fno
50	 29.33	0	37497..38045	-	182	148642110	-	Msm_0050	-	metal-binding protein
51	 28.90	0	38119..41187	-	1022	148642111	-	Msm_0051	-	adhesin-like protein
52	 29.38	0	41323..48915	-	2530	148642112	-	Msm_0052	-	adhesin-like protein
53	 31.29	0	49123..50493	-	456	148642113	-	Msm_0053	-	tRNA CCA-pyrophosphorylase
54	 27.24	-1	50498..51055	-	185	148642114	-	Msm_0054	-	2'-5' RNA ligase, LigT
55	 33.60	0	51065..52171	-	368	148642115	-	Msm_0055	-	3-dehydroquinate synthase
56	 37.11	+1	52205..52999	-	264	148642116	-	Msm_0056	-	fructose-bisphosphate aldolase
57	 28.44	0	53155..53910	-	251	148642117	-	Msm_0057	-	adhesin-like protein
58	 24.79	-1	54271..58788	-	1505	148642118	-	Msm_0058	-	DNA helicase II
59	 30.56	0	58882..59421	-	179	148642119	-	Msm_0059	-	SAM-dependent methyltransferase
60	 32.16	0	59408..60262	-	284	148642120	-	Msm_0060	-	GHMP family kinase
61	 22.98	-2	60289..61476	-	395	148642121	-	Msm_0061	-	ATPase
62	 31.76	0	61702..62208	-	168	148642122	-	Msm_0062	-	flavodoxin
63	 36.29	+1	62376..63017	+	213	148642123	-	Msm_0063	-	hypothetical protein
64	 29.91	0	63014..63481	+	155	148642124	-	Msm_0064	-	hypothetical protein
65	 35.12	0	63505..64176	-	223	148642125	-	Msm_0065	-	hypothetical protein
66	 34.41	0	64182..65198	-	338	148642126	-	Msm_0066	-	N-acetylglucosamine-1-phosphate transferase
67	 26.37	-1	65476..66351	+	291	148642127	-	Msm_0067	-	hypothetical protein
68	 35.66	+1	66751..66879	-	42	148642128	-	Msm_0068	-	hypothetical protein
69	 27.60	-1	67139..67609	-	156	148642129	-	Msm_0069	-	hypothetical protein
70	 29.02	0	67615..69192	-	525	148642130	-	Msm_0070	-	hypothetical protein
71	 32.73	0	69217..71199	-	660	148642131	metG	Msm_0071	-	methionyl-tRNA synthetase
72	 28.77	0	71464..73020	-	518	148642132	-	Msm_0072	-	putative exonuclease SBCC
73	 33.18	0	73150..74475	+	441	148642133	-	Msm_0073	-	DNA primase large subunit
74	 29.67	0	74472..74990	-	172	148642134	-	Msm_0074	-	hypothetical protein
75	 32.72	0	75092..76066	+	324	148642135	-	Msm_0075	-	DNA primase small subunit
76	 27.13	-1	76072..76329	+	85	148642136	-	Msm_0076	-	hypothetical protein
77	 27.81	-1	76324..76884	-	186	148642137	-	Msm_0077	-	thymidylate kinase
78	 34.23	0	76889..77557	-	222	148642138	-	Msm_0078	-	dolichol kinase
79	 34.98	0	77576..78727	-	383	148642139	-	Msm_0079	-	CofH protein (7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO)/F420 biosynthesis)
80	 34.32	0	78877..79383	+	168	148642140	-	Msm_0080	-	sulfopyruvate decarboxylase, comD
81	 31.66	0	79388..79924	+	178	148642141	-	Msm_0081	-	sulfopyruvate decarboxylase, ComE
82	 34.89	0	79936..82242	-	768	148642142	-	Msm_0082	-	heterodisulfide reductase, subunit A, HdrA
83	 32.38	0	82242..83183	-	313	148642143	-	Msm_0083	-	heterodisulfide reductase, subunit B, HdrB
84	 36.62	+1	83164..83772	-	202	148642144	-	Msm_0084	-	heterodisulfide reductase, subunit C, HdrC
85	 33.41	0	83787..85034	-	415	148642145	-	Msm_0085	-	putative ferredoxin
86	 33.19	0	85067..85774	-	235	148642146	-	Msm_0086	-	(2R)-phospho-3-sulfolactate synthase, ComA
87	 27.34	-1	86044..87261	+	405	148642147	-	Msm_0087	-	putative transposase
88	 33.47	0	87323..88039	+	238	148642148	-	Msm_0088	-	hypothetical protein
89	 31.92	0	88045..88824	+	259	148642149	-	Msm_0089	-	pyrroline-5-carboxylate reductase (NADP oxidoreductase, coenzyme F420-dependent), ProC
90	 28.47	0	88951..89238	+	95	148642150	-	Msm_0090	-	hypothetical protein
91	 34.20	0	89335..90711	+	458	148642151	-	Msm_0091	-	2,3-diphosphoglycerate synthase (putative GTPase)
92	 32.19	0	90797..91408	+	203	148642152	-	Msm_0092	-	putative adhesin-like protein
93	 31.04	0	91445..92710	-	421	148642153	-	Msm_0093	-	hypothetical protein
94	 26.57	-1	92724..93314	-	196	148642154	-	Msm_0094	-	TetR family transcriptional regulator
95	 34.31	0	93407..94123	+	238	148642155	-	Msm_0095	-	phosphotransacetylase
96	 33.07	0	94180..94944	+	254	148642156	-	Msm_0096	-	undecaprenyl pyrophosphate synthase, UppS
97	 34.91	0	94950..95711	+	253	148642157	-	Msm_0097	-	Mg-dependent DNase, TatD
98	 29.00	0	95708..96076	-	122	148642158	-	Msm_0098	-	hypothetical protein
99	 32.12	0	96102..96596	-	164	148642159	-	Msm_0099	-	hypothetical protein
100	 30.53	0	96593..96985	-	130	148642160	-	Msm_0100	-	hypothetical protein
31.84	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.