IslandPath Analysis: Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.92   STD DEV: 3.10
Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), complete genome - 1..1160782
976 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.85	-1	39..1331	+	430	118602061	-	Rmag_0001	-	chromosomal replication initiator protein DnaA
2	 25.72	-2	1543..2646	+	367	118602062	-	Rmag_0002	-	DNA polymerase III, beta subunit
3	 30.01	-1	2946..5354	+	802	118602063	-	Rmag_0003	-	DNA gyrase subunit B
4	 33.00	0	5385..6272	+	295	118602064	-	Rmag_0004	-	phosphoribulokinase
5	 34.80	0	6904..9354	-	816	118602065	-	Rmag_0005	-	leucyl-tRNA synthetase
6	 34.93	0	9387..10325	-	312	118602066	-	Rmag_0006	-	dihydroorotate oxidase B, catalytic subunit
7	 35.05	0	10365..11006	+	213	118602067	-	Rmag_0007	-	dethiobiotin synthase
8	 33.81	0	11289..11918	-	209	118602068	-	Rmag_0008	-	glutathione S-transferase domain-containing protein
9	 31.13	-1	11997..12860	-	287	118602069	-	Rmag_0009	-	ubiquinol-cytochrome c reductase cytochrome c1 subunit
10	 36.11	0	12864..14087	-	407	118602070	-	Rmag_0010	-	cytochrome b/b6 domain-containing protein
11	 38.86	+1	14101..14697	-	198	118602071	-	Rmag_0011	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
12	 34.31	0	14802..15107	-	101	118602072	-	Rmag_0012	-	hypothetical protein
13	 36.36	0	15160..17838	+	892	118602073	-	Rmag_0013	-	protein translocase subunit secA
14	 37.68	0	17831..18889	+	352	118602074	anmK	Rmag_0014	-	anhydro-N-acetylmuramic acid kinase
15	 37.49	0	18879..19913	+	344	118602075	-	Rmag_0015	-	dihydroorotase
16	 33.22	0	20251..21153	-	300	118602076	-	Rmag_0016	-	FMN adenylyltransferase / riboflavin kinase
17	 35.42	0	22172..23227	-	351	118602077	-	Rmag_0018	-	homoserine O-succinyltransferase
18	 36.56	0	23227..24063	-	278	118602078	-	Rmag_0019	-	hypothetical protein
19	 39.81	+1	24091..25278	-	395	118602079	-	Rmag_0020	-	aminotransferase
20	 37.58	0	25334..25639	-	101	118602080	-	Rmag_0021	-	peptidylprolyl isomerase, FKBP-type
21	 33.85	0	25650..26423	-	257	118602081	-	Rmag_0022	-	hypothetical protein
22	 36.29	0	26456..27334	-	292	118602082	-	Rmag_0023	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
23	 34.67	0	27845..28963	-	372	118602083	-	Rmag_0024	-	peptidase M23B
24	 38.80	+1	28956..30107	-	383	118602084	-	Rmag_0025	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
25	 34.96	0	30104..30904	-	266	118602085	-	Rmag_0026	-	phosphatidate cytidylyltransferase
26	 35.74	0	30898..31644	-	248	118602086	-	Rmag_0027	-	undecaprenyl pyrophosphate synthetase
27	 41.02	+1	34314..35081	+	255	118602087	-	Rmag_0028	-	imidazole glycerol phosphate synthase subunit HisF
28	 31.45	-1	35150..35680	+	176	118602088	-	Rmag_0029	-	putative transmembrane protein
29	 37.00	0	35687..36586	+	299	118602089	-	Rmag_0030	-	protoheme IX farnesyltransferase
30	 38.02	0	36587..36778	+	63	118602090	-	Rmag_0031	-	hypothetical protein
31	 36.73	0	37140..38111	-	323	118602091	-	Rmag_0032	-	cytochrome oxidase assembly
32	 35.15	0	38205..39029	-	274	118602092	-	Rmag_0033	-	hypothetical protein
33	 37.17	0	39283..40350	+	355	118602093	-	Rmag_0034	-	cytochrome-c oxidase
34	 39.46	+1	40373..41989	+	538	118602094	-	Rmag_0035	-	cytochrome-c oxidase
35	 35.02	0	42080..42613	+	177	118602095	-	Rmag_0036	-	cytochrome c oxidase assembly protein CtaG/Cox11
36	 38.98	+1	42631..43515	+	294	118602096	-	Rmag_0037	-	cytochrome c oxidase, subunit III
37	 34.14	0	43758..44504	+	248	118602097	-	Rmag_0038	-	hypothetical protein
38	 39.11	+1	44618..46036	+	472	118602098	-	Rmag_0039	-	cytochrome c oxidase, cbb3-type, subunit I
39	 40.03	+1	46050..46781	+	243	118602099	-	Rmag_0040	-	cytochrome c oxidase, cbb3-type, subunit II
40	 36.88	0	46945..47847	+	300	118602100	-	Rmag_0041	-	cytochrome c oxidase, cbb3-type, subunit III
41	 33.33	0	49389..49970	-	193	118602101	-	Rmag_0042	-	outer membrane lipoprotein carrier protein LolA
42	 37.52	0	49963..52230	-	755	118602102	-	Rmag_0043	-	DNA translocase FtsK
43	 39.58	+1	52279..53223	+	314	118602103	-	Rmag_0044	-	thioredoxin reductase
44	 37.69	0	54174..55136	-	320	118602104	-	Rmag_0045	-	aspartate carbamoyltransferase
45	 35.90	0	55117..55545	-	142	118602105	-	Rmag_0046	-	Holliday junction resolvase YqgF
46	 36.37	0	55542..56726	-	394	118602106	-	Rmag_0047	-	lytic murein transglycosylase
47	 34.95	0	56739..57665	+	308	118602107	-	Rmag_0048	-	ApbE family lipoprotein
48	 40.71	+1	58950..59342	+	130	118602108	-	Rmag_0050	-	camphor resistance protein CrcB
49	 35.31	0	59339..60301	-	320	118602109	-	Rmag_0051	-	glutathione synthase
50	 38.71	+1	60518..60982	+	154	118602110	-	Rmag_0052	-	hypothetical protein
51	 41.26	+2	61014..62489	+	491	118602111	-	Rmag_0053	-	NusA antitermination factor
52	 39.38	+1	62546..64993	+	815	118602112	-	Rmag_0054	-	translation initiation factor 2
53	 36.87	0	65011..65349	+	112	118602113	-	Rmag_0055	-	ribosome-binding factor A
54	 35.64	0	65374..66282	+	302	118602114	-	Rmag_0056	-	tRNA pseudouridine synthase B
55	 38.05	+1	66845..68116	+	423	118602115	-	Rmag_0057	-	phosphoribosylamine--glycine ligase
56	 35.44	0	68472..69230	-	252	118602116	-	Rmag_0058	-	periplasmic or secreted lipoprotein-like
57	 36.58	0	69598..70428	+	276	118602117	-	Rmag_0059	-	hypothetical protein
58	 30.86	-1	70723..71328	-	201	118602118	-	Rmag_0061	-	dephospho-CoA kinase
59	 41.19	+2	71651..73636	+	661	118602119	-	Rmag_0062	-	transketolase
60	 38.35	+1	73745..74740	+	331	118602120	-	Rmag_0063	-	glyceraldehyde-3-phosphate dehydrogenase
61	 39.63	+1	75162..76337	+	391	118602121	-	Rmag_0065	-	phosphoglycerate kinase
62	 36.80	0	76330..77772	+	480	118602122	-	Rmag_0066	-	pyruvate kinase
63	 39.45	+1	77856..78917	+	353	118602123	-	Rmag_0067	-	fructose-bisphosphate aldolase
64	 38.77	+1	78981..80855	+	624	118602124	-	Rmag_0068	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
65	 32.11	0	80891..81463	+	190	118602125	-	Rmag_0069	-	methyltransferase GidB
66	 29.09	-1	81460..82260	+	266	118602126	-	Rmag_0070	-	hypothetical protein
67	 36.45	0	82267..83037	+	256	118602127	-	Rmag_0071	-	TatD family hydrolase
68	 34.54	0	83034..83945	+	303	118602128	-	Rmag_0072	-	ribosomal large subunit pseudouridine synthase C
69	 33.82	0	83993..84814	+	273	118602129	-	Rmag_0073	-	4-hydroxybenzoate octaprenyltransferase
70	 40.20	+1	85474..86289	-	271	118602130	-	Rmag_0074	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
71	 35.48	0	86449..87843	+	464	118602131	-	Rmag_0075	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
72	 36.46	0	87843..88322	+	159	118602132	-	Rmag_0076	-	hypothetical protein
73	 33.62	0	90190..90891	-	233	118602133	-	Rmag_0077	-	ABC transporter related
74	 35.32	0	90999..93719	+	906	118602134	-	Rmag_0078	-	DNA polymerase I
75	 35.45	0	93735..95438	+	567	118602135	argS	Rmag_0079	-	arginyl-tRNA synthetase
76	 33.14	0	95435..98596	+	1053	118602136	-	Rmag_0080	-	UvrD/REP helicase
77	 33.16	0	99327..99908	-	193	118602137	-	Rmag_0082	-	thiamine-phosphate diphosphorylase
78	 29.49	-1	99907..100869	+	320	118602138	-	Rmag_0083	-	hypothetical protein
79	 32.30	0	100862..101347	+	161	118602139	-	Rmag_0084	-	OstA family protein
80	 38.88	+1	101492..102700	+	402	118602140	-	Rmag_0085	-	sulfate adenylyltransferase
81	 37.36	0	102897..103766	+	289	118602141	-	Rmag_0086	-	hypothetical protein
82	 40.21	+1	103798..104277	+	159	118602142	-	Rmag_0087	-	adenylylsulfate reductase, beta subunit
83	 41.14	+2	104277..106160	+	627	118602143	-	Rmag_0088	-	adenylylsulfate reductase
84	 34.76	0	106231..106581	+	116	118602144	-	Rmag_0089	-	hypothetical protein
85	 34.12	0	106587..107093	+	168	118602145	-	Rmag_0090	-	putative peptidyl-prolyl cis-trans isomerase
86	 30.83	-1	107096..107455	+	119	118602146	-	Rmag_0091	-	hypothetical protein
87	 40.68	+1	107558..109558	-	666	118602147	hppA	Rmag_0092	-	membrane-bound proton-translocating pyrophosphatase
88	 39.32	+1	110185..110835	-	216	118602148	-	Rmag_0093	-	adenylate kinase
89	 38.23	+1	110906..112150	-	414	118602149	-	Rmag_0094	-	6-phosphofructokinase
90	 35.42	0	114090..114329	-	79	118602150	-	Rmag_0095	-	hypothetical protein
91	 35.42	0	116484..117872	-	462	118602151	-	Rmag_0097	-	cysteinyl-tRNA synthetase
92	 39.83	+1	118002..118601	+	199	118602152	-	Rmag_0098	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
93	 40.62	+1	118857..119927	+	356	118602153	-	Rmag_0099	-	3-isopropylmalate dehydrogenase
94	 34.43	0	122225..122770	+	181	118602154	nudE	Rmag_0101	-	ADP-ribose diphosphatase NudE
95	 34.29	0	123511..124758	+	415	118602155	-	Rmag_0103	-	diaminopimelate decarboxylase
96	 31.02	-1	124751..125053	+	100	118602156	-	Rmag_0104	-	hypothetical protein
97	 34.31	0	125019..126146	+	375	118602157	-	Rmag_0105	-	lipid-A-disaccharide synthase
98	 33.69	0	126127..126963	+	278	118602158	-	Rmag_0106	-	nicotinate-nucleotide pyrophosphorylase [carboxylating]
99	 35.97	0	126949..127707	-	252	118602159	-	Rmag_0107	-	inositol monophosphatase
100	 37.77	0	127824..129626	-	600	118602160	-	Rmag_0108	-	RNA polymerase, sigma 70 subunit, RpoD
34.92	MEAN

3.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.