IslandPath Analysis: Methylococcus capsulatus str. Bath



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.47   STD DEV: 3.81
Methylococcus capsulatus str. Bath, complete genome - 1..3304561
2956 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.08	0	44..1921	+	625	53802710	gidA	MCA0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 65.70	0	1936..2553	+	205	53802709	gidB	MCA0002	-	glucose-inhibited division protein B
3	 62.99	0	2554..3342	+	262	53802708	-	MCA0003	-	ParA family protein
4	 66.08	0	3364..4212	+	282	53802707	-	MCA0004	-	ParB family protein
5	 57.53	-1	4268..4639	+	123	53802706	-	MCA0005	-	ATP synthase protein I, putative
6	 58.72	-1	4667..5446	+	259	53802705	atpB-1	MCA0006	-	F0F1 ATP synthase subunit A
7	 60.16	0	5502..5747	+	81	53802704	atpE-1	MCA0007	-	F0F1 ATP synthase subunit C
8	 58.23	-1	5810..6283	+	157	53802695	atpF	MCA0008	-	ATP synthase F0, B subunit
9	 59.03	-1	6290..6826	+	178	53802694	atpH	MCA0009	-	ATP synthase F1, delta subunit
10	 62.39	0	6842..8383	+	513	53802693	atpA-1	MCA0010	-	F0F1 ATP synthase subunit alpha
11	 63.54	0	8394..9257	+	287	53802692	atpG-1	MCA0011	-	ATP synthase F1, gamma subunit
12	 62.98	0	9293..10675	+	460	53802691	atpD-1	MCA0012	-	F0F1 ATP synthase subunit beta
13	 67.61	+1	10701..11123	+	140	53802690	atpC-1	MCA0013	-	ATP synthase F1, epsilon subunit
14	 64.50	0	11242..12627	+	461	53802689	glmU	MCA0014	-	UDP-N-acetylglucosamine pyrophosphorylase
15	 66.72	0	12615..14447	+	610	53802680	glmS	MCA0015	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
16	 59.23	-1	14534..16618	+	694	53802679	metG	MCA0016	-	methionyl-tRNA synthetase
17	 68.22	+1	16626..17981	+	451	53802678	bioA	MCA0017	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
18	 70.22	+1	17988..18719	+	243	53802677	-	MCA0018	-	hypothetical protein
19	 65.58	0	18756..19217	+	153	53802676	-	MCA0019	-	hypothetical protein
20	 64.98	0	19221..20051	-	276	53802675	djlA	MCA0020	-	DNA-J like membrane chaperone protein
21	 67.11	0	20139..21032	+	297	53802674	purC	MCA0021	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
22	 71.44	+2	21053..22330	-	425	53802666	cca	MCA0022	-	tRNA nucleotidyltransferase
23	 69.15	+1	22396..23280	+	294	53802665	-	MCA0023	-	hypothetical protein
24	 70.06	+1	23287..23994	-	235	53802664	pgl-1	MCA0024	-	6-phosphogluconolactonase
25	 64.11	0	23996..25483	-	495	53802663	zwf-1	MCA0025	-	glucose-6-phosphate 1-dehydrogenase
26	 63.95	0	25693..28341	-	882	53802662	-	MCA0026	-	type III restriction-modification system, R subunit, putative
27	 64.40	0	28538..29773	-	411	53802661	-	MCA0027	-	ISMca5, transposase
28	 62.89	0	29878..30168	-	96	53802660	-	MCA0028	-	nucleotidyltransferase family protein
29	 55.81	-2	30165..30551	-	128	53802651	-	MCA0029	-	hypothetical protein
30	 64.44	0	32445..32984	+	179	53802799	-	MCA0031	-	ISMca6, transposase, OrfA
31	 62.46	0	32956..33549	+	197	53802798	-	MCA0032	-	ISMca6, transposase, OrfB
32	 63.18	0	33699..34586	-	295	53802797	dinD	MCA0033	-	DNA-damage-inducible protein D
33	 53.90	-2	34606..35553	-	315	53802796	-	MCA0034	-	hypothetical protein
34	 58.25	-1	35550..36155	-	201	53802795	-	MCA0035	-	hypothetical protein
35	 60.44	0	36152..37243	-	363	53802794	-	MCA0036	-	hypothetical protein
36	 67.98	+1	38085..39914	+	609	53802793	edd	MCA0037	-	phosphogluconate dehydratase
37	 67.72	+1	39904..40569	+	221	53802784	eda	MCA0038	-	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase
38	 67.45	+1	40860..41498	+	212	53802783	-	MCA0039	-	dihydroxyacetone phosphatase family protein
39	 68.08	+1	41511..42500	-	329	53802782	-	MCA0040	-	dihydroxyacetone kinase family protein
40	 67.55	+1	42530..43546	-	338	53802781	-	MCA0041	-	Gfo/Idh/MocA family oxidoreductase
41	 64.50	0	43745..44251	+	168	53802780	-	MCA0042	-	anti-oxidant AhpCTSA family protein
42	 62.70	0	44293..44721	+	142	53802779	rpiB	MCA0043	-	ribose 5-phosphate isomerase B
43	 55.86	-2	44934..45155	+	73	53802778	-	MCA0044	-	hypothetical protein
44	 68.61	+1	45165..45833	-	222	53802777	-	MCA0045	-	endonuclease V
45	 64.51	0	45837..46625	-	262	53802767	-	MCA0046	-	MazG family protein
46	 63.02	0	46628..47560	-	310	53802766	-	MCA0047	-	carbohydrate kinase
47	 61.16	0	47616..47978	-	120	53802765	dgkA	MCA0048	-	diacylglycerol kinase
48	 65.36	0	48224..50446	+	740	53802764	-	MCA0049	-	cellulose-binding domain-containing protein
49	 64.12	0	50597..51697	-	366	53802763	-	MCA0050	-	ISMca1, transposase
50	 64.84	0	51863..52246	-	127	53802762	gcvH	MCA0051	-	glycine cleavage system H protein
51	 64.92	0	52436..53521	+	361	53802761	-	MCA0052	-	mrP protein
52	 58.38	-1	53532..54098	+	188	53802760	dcd	MCA0053	-	deoxycytidine triphosphate deaminase
53	 66.04	0	54127..55407	+	426	53802751	hemL	MCA0054	-	glutamate-1-semialdehyde-2,1-aminomutase
54	 68.07	+1	55404..57329	+	641	53802750	-	MCA0055	-	DedA family protein
55	 59.90	0	57326..58582	-	418	53802749	rho	MCA0056	-	transcription termination factor Rho
56	 60.61	0	58769..59098	-	109	53802748	trxA-1	MCA0057	-	thioredoxin
57	 67.84	+1	59262..60029	-	255	53802747	-	MCA0058	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
58	 66.54	0	60004..60780	-	258	53802746	-	MCA0059	-	hypothetical protein
59	 68.64	+1	60908..61717	-	269	53802745	-	MCA0060	-	general secretion pathway protein B, putative
60	 66.61	0	61739..63388	-	549	53802744	exeA	MCA0061	-	general secretion pathway protein A
61	 64.10	0	63501..64397	-	298	53802735	-	MCA0062	-	protoheme IX farnesyltransferase
62	 65.36	0	64477..65856	+	459	53802734	-	MCA0063	-	M16 family peptidase
63	 66.37	0	65846..67171	+	441	53802733	-	MCA0064	-	hypothetical protein
64	 65.78	0	67161..67727	+	188	53802732	-	MCA0065	-	methyltransferase, putative
65	 62.99	0	67724..68212	+	162	53802731	coaD	MCA0066	-	pantetheine-phosphate adenylyltransferase
66	 63.43	0	68235..70733	-	832	53802730	glgP-1	MCA0067	-	glycogen phosphorylase
67	 64.06	0	70801..71184	-	127	53802729	-	MCA0068	-	polyphosphate kinase-related protein
68	 66.48	0	71264..71794	+	176	53802728	-	MCA0069	-	hypothetical protein
69	 67.97	+1	71806..73416	+	536	53802719	-	MCA0070	-	Na/Pi-cotransporter family protein
70	 65.64	0	73668..74252	-	194	53802718	-	MCA0071	-	hypothetical protein
71	 65.80	0	74221..75024	-	267	53802717	-	MCA0072	-	hypothetical protein
72	 63.66	0	75126..76223	+	365	53802716	-	MCA0073	-	pyruvate formate lyase-activating enzyme, putative
73	 62.25	0	76264..76875	+	203	53802715	gst	MCA0074	-	glutathione S-transferase
74	 61.52	0	76932..77942	+	336	53802714	-	MCA0075	-	lipase family protein
75	 55.44	-2	78087..79778	+	563	53802713	-	MCA0076	-	patatin family protein
76	 61.21	0	79817..80146	+	109	53802712	-	MCA0077	-	hypothetical protein
77	 67.12	0	80931..84017	-	1028	53802703	-	MCA0079	-	AcrB/AcrD/AcrF family protein
78	 68.44	+1	84017..84919	-	300	53802702	-	MCA0080	-	hypothetical protein
79	 62.94	0	85182..85664	+	160	53802701	slyD	MCA0081	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
80	 65.60	0	85707..87020	-	437	53802700	-	MCA0082	-	MiaB-like tRNA modifying enzyme YliG
81	 62.96	0	87198..88115	+	305	53802699	-	MCA0083	-	UbiE/COQ5 family methlytransferase
82	 65.99	0	88186..89226	+	346	53802698	-	MCA0084	-	hypothetical protein
83	 66.95	0	89266..89619	+	117	53802697	-	MCA0085	-	hypothetical protein
84	 63.36	0	89664..90116	-	150	53802696	pilE	MCA0086	-	type 4 fimbrial biogenesis protein PilE
85	 64.11	0	90123..93521	-	1132	53802688	-	MCA0087	-	hypothetical protein
86	 67.94	+1	93547..94095	-	182	53802687	-	MCA0088	-	hypothetical protein
87	 59.50	-1	94123..95196	-	357	53802686	-	MCA0089	-	pilin-like protein
88	 65.82	0	95226..95816	-	196	53802685	-	MCA0090	-	type IV fimbrial biogenesis protein PilV, putative
89	 61.57	0	95813..96361	-	182	53802684	-	MCA0091	-	hypothetical protein
90	 66.86	0	96425..97483	-	352	53802683	-	MCA0092	-	putative RNA 2'-O-ribose methyltransferase
91	 65.52	0	97563..98783	+	406	53802682	-	MCA0093	-	ABC transporter, ATP-binding protein
92	 64.44	0	98827..99231	+	134	53802681	-	MCA0094	-	Mov34/MPN/PAD-1 family protein
93	 65.84	0	99236..101890	-	884	53802673	-	MCA0095	-	cation transporter E1-E2 family ATPase
94	 64.12	0	102004..103104	+	366	53802672	-	MCA0096	-	ISMca1, transposase
95	 63.38	0	103385..104815	-	476	53802671	gatB	MCA0097	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
96	 67.08	0	104842..106299	-	485	53802670	gatA	MCA0098	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
97	 65.28	0	106353..106640	-	95	53802669	gatC	MCA0099	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
98	 65.52	0	106745..107788	+	347	53802668	mreB	MCA0100	-	rod shape-determining protein MreB
99	 66.11	0	107807..108709	+	300	53802667	mreC	MCA0101	-	rod shape-determining protein MreC
100	 65.45	0	108696..109187	+	163	53802659	mreD	MCA0102	-	rod shape-determining protein MreD
63.47	MEAN

3.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.