IslandPath Analysis: Coxiella burnetii Dugway 5J108-111



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.75   STD DEV: 4.96
Coxiella burnetii Dugway 5J108-111, complete genome - 1..2158758
1993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 44.69	0	140..1495	+	451	154706441	dnaA	CBUD_0001	-	chromosomal replication initiator protein
2	 43.60	0	1639..2748	+	369	154706526	dnaN	CBUD_0002	-	DNA polymerase III, beta chain
3	 43.20	0	2753..3826	+	357	154707128	recF	CBUD_0003	-	DNA replication and repair protein
4	 46.94	0	4122..6554	+	810	209363643	gyrB	CBUD_0005	-	DNA gyrase subunit B
5	 43.22	0	7796..8068	-	90	154707433	-	CBUD_0006	-	hypothetical protein
6	 43.62	0	8176..9837	-	553	154706378	-	CBUD_0008	-	hypothetical protein
7	 40.87	0	9978..12074	-	698	154705767	-	CBUD_0009	-	hypothetical protein
8	 44.50	0	15536..17371	+	611	154706946	glmS	CBUD_0013	-	glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
9	 43.32	0	17368..17958	+	196	209363644	-	CBUD_0014	-	hypothetical cytosolic protein
10	 39.47	0	18115..18342	+	75	209363645	-	CBUD_0014a	-	hypothetical protein
11	 46.94	0	18347..19213	-	288	154705750	-	CBUD_0015	-	gluconolactonase
12	 39.07	0	22618..23436	+	272	209363646	-	CBUD_0020	-	hypothetical protein
13	 44.26	0	23466..26174	-	902	154707059	polA	CBUD_0021	-	DNA polymerase I
14	 48.19	+1	26225..27853	+	542	154707145	-	CBUD_0022	-	amino acid permease
15	 45.59	0	27777..28298	+	173	209363647	-	CBUD_0023	-	acyl-CoA hydrolase
16	 43.36	0	28427..30370	+	647	154705832	-	CBUD_0024	-	lysine-specific permease
17	 37.95	0	30443..30832	+	129	154707346	-	CBUD_0025	-	cupin superfamily protein
18	 42.86	0	30882..31238	+	118	154707463	-	CBUD_0026	-	hypothetical protein
19	 35.62	-1	31321..31932	+	203	209363648	-	CBUD_0027	-	cupin superfamily protein
20	 37.66	-1	32149..32610	-	153	154707564	-	CBUD_0028	-	acetyltransferase
21	 34.52	-1	32607..33365	-	252	154706970	-	CBUD_0029	-	hypothetical membrane spanning protein
22	 37.04	-1	33374..33670	-	98	209363649	-	CBUD_0030	-	hypothetical protein
23	 34.74	-1	33694..34332	-	212	154706089	-	CBUD_0031	-	hypothetical protein
24	 38.76	0	34522..34650	+	42	209363650	-	CBUD_0032	-	hypothetical protein
25	 38.04	0	34669..34923	+	84	154707024	-	CBUD_0033	-	bacterial regulatory protein, luxR family
26	 36.46	-1	34937..35320	+	127	154706190	-	CBUD_0034	-	bacterial regulatory protein, luxR family
27	 36.46	-1	35396..35683	-	95	154705743	-	CBUD_0035	-	hypothetical protein
28	 45.28	0	36124..36600	-	158	154707121	-	CBUD_0036	-	hypothetical protein
29	 44.47	0	36805..37998	-	397	154706652	-	CBUD_0037	-	export ABC transporter permease protein
30	 42.64	0	38009..38674	-	221	154707096	-	CBUD_0038	-	ABC transporter ATP-binding protein
31	 43.96	0	38667..39842	-	391	154706910	macA	CBUD_0039	-	macrolide-specific efflux protein
32	 45.80	0	39845..41368	-	507	154706192	-	CBUD_0040	-	type I secretion outer membrane protein
33	 44.95	0	41435..42562	+	375	209363651	pdxB	CBUD_0041	-	erythronate-4-phosphate dehydrogenase
34	 41.09	0	42543..42671	+	42	154707187	-	CBUD_0042	-	hypothetical protein
35	 46.08	0	42708..43421	+	237	154706317	-	CBUD_0043	-	outer membrane protein
36	 43.34	0	43569..45557	-	662	154705781	priA	CBUD_0044	-	primosomal protein N'
37	 48.68	+1	45629..46195	+	188	154707506	efp	CBUD_0045	-	protein translation elongation factor P (EF-P)
38	 42.15	0	46134..47165	+	343	209363652	-	CBUD_0046	-	hypothetical protein
39	 37.21	-1	47387..48832	+	481	154706010	-	CBUD_0047	-	hypothetical membrane spanning protein
40	 37.57	-1	48885..50018	+	377	209363653	-	CBUD_0048	-	hypothetical membrane associated protein
41	 40.97	0	50035..50571	-	178	209363654	-	CBUD_0049	-	hypothetical protein
42	 44.18	0	50562..51059	-	165	154706619	-	CBUD_0050	-	hypothetical protein
43	 34.95	-1	51826..52875	+	349	154707221	-	CBUD_0053	-	hypothetical protein
44	 58.01	+2	52884..53114	-	76	209363656	-	CBUD_0053a	-	hypothetical protein
45	 39.05	0	53105..53524	+	139	209363655	-	CBUD_0054	-	hypothetical protein
46	 42.99	0	53529..54377	-	282	154706090	psd	CBUD_0055	-	phosphatidylserine decarboxylase
47	 41.80	0	54384..55529	+	381	209363657	cca	CBUD_0056	-	tRNA nucleotidyltransferase
48	 42.82	0	55563..56816	-	417	209363658	-	CBUD_0057	-	hypothetical protein
49	 47.24	0	56823..57455	+	210	154707663	lolB	CBUD_0058	-	outer-membrane lipoprotein
50	 48.75	+1	57630..58589	+	319	154706735	prs	CBUD_0060	-	ribose-phosphate pyrophosphokinase
51	 38.10	0	58594..60042	+	482	154706083	-	CBUD_0062	-	hypothetical membrane spanning protein
52	 38.41	0	61244..61381	-	45	209363659	-	CBUD_0062a	-	hypothetical protein
53	 43.61	0	61411..62325	+	304	154706011	rfbA	CBUD_0064	-	glucose-1-phosphate thymidylyltransferase
54	 42.17	0	62671..64050	-	459	154707003	-	CBUD_0065	-	protoporphyrinogen oxidase
55	 43.99	0	64052..65308	-	418	154707185	-	CBUD_0066	-	homoserine dehydrogenase
56	 41.21	0	65322..66362	-	346	209363660	-	CBUD_0067	-	UDP-glucose 4-epimerase
57	 40.00	0	66359..66928	-	189	154707208	rfbC	CBUD_0068	-	dTDP-4-dehydrorhamnose 3,5-epimerase
58	 40.73	0	66938..68167	-	409	209363661	-	CBUD_0069	-	aminobutyraldehyde dehydrogenase
59	 49.66	+1	68314..69048	+	244	154705751	-	CBUD_0070	-	LSU ribosomal protein L25P
60	 47.34	0	69055..69618	+	187	154707189	pth	CBUD_0071	-	peptidyl-tRNA hydrolase
61	 44.84	0	69651..70754	+	367	209363662	ychF	CBUD_0072	-	GTP-binding protein, probable translation factor
62	 41.23	0	70758..71162	+	134	209363663	-	CBUD_0073	-	hypothetical protein
63	 51.16	+1	71450..71578	+	42	209363664	-	CBUD_0073a	-	hypothetical protein
64	 50.62	+1	71698..71859	+	53	154706598	-	CBUD_0075	-	hypothetical cytosolic protein
65	 37.75	-1	71961..72572	+	203	154706906	-	CBUD_0076	-	hypothetical membrane spanning protein
66	 45.56	0	72685..73281	-	198	209363665	-	CBUD_0077	-	hypothetical protein
67	 39.84	0	73268..73513	-	81	154706128	-	CBUD_0078	-	hypothetical protein
68	 40.79	0	73635..75056	+	473	209363666	-	CBUD_0079	-	hypothetical protein
69	 39.94	0	75125..75487	+	120	209363667	-	CBUD_0079a	-	hypothetical protein
70	 47.26	0	75622..75822	-	66	209363668	-	CBUD_0081	-	hypothetical protein
71	 50.39	+1	75861..75989	-	42	154705891	-	CBUD_0082	-	hypothetical protein
72	 38.27	0	76043..76528	-	161	209363669	-	CBUD_0083	-	hypothetical protein
73	 37.79	0	76743..78539	+	598	154707050	-	CBUD_0084	-	hypothetical membrane spanning protein
74	 37.42	-1	78532..79926	+	464	154706599	-	CBUD_0086	-	hypothetical protein
75	 37.78	-1	79904..80353	-	149	154706078	-	CBUD_0085	-	GtrA family protein
76	 36.21	-1	81137..81484	-	115	209363670	pilF	CBUD_0088	-	type 4 pili biogenesis protein
77	 43.16	0	81511..82650	-	379	209363671	-	CBUD_0089	-	3-hydroxyisobutyryl-CoA hydrolase
78	 40.87	0	82699..84291	-	530	154706074	oppD/oppF	CBUD_0090	-	oligopeptide transport ATP-binding protein
79	 40.26	0	85829..86839	-	336	154707740	oppB	CBUD_0092	-	oligopeptide transport system permease protein
80	 41.74	0	86864..89098	-	744	154707212	oppA	CBUD_0093	-	oligopeptide-binding protein
81	 45.77	0	89133..90161	+	342	154706630	-	CBUD_0095	-	lysine 2,3-aminomutase
82	 42.27	0	90151..91962	-	603	154707257	-	CBUD_0094	-	hypothetical membrane spanning protein
83	 30.21	-2	92224..92319	-	31	209363672	-	CBUD_0095a	-	hypothetical protein
84	 44.01	0	92340..92882	-	180	209363673	-	CBUD_0096	-	hypothetical membrane associated protein
85	 46.82	0	92885..95146	-	753	209363674	parC	CBUD_0097	-	topoisomerase IV subunit A
86	 44.65	0	95189..95347	+	52	209363675	-	CBUD_0097a	-	hypothetical protein
87	 48.61	+1	95492..95635	-	47	209363676	-	CBUD_0097b	-	hypothetical cytosolic protein
88	 40.06	0	95723..96376	+	217	154707300	-	CBUD_0100	-	hypothetical protein
89	 46.30	0	96663..97310	+	215	154706892	-	CBUD_0102	-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
90	 42.74	0	97260..97865	-	201	154706566	pabA	CBUD_0101	-	anthranilate synthase component II
91	 39.66	0	97846..98541	-	231	209363677	rpe	CBUD_0103	-	ribulose-phosphate 3-epimerase
92	 44.12	0	98541..99356	-	271	209363678	mucZ	CBUD_0104	-	mucoidy activation protein
93	 45.72	0	99392..100699	+	435	154706140	gshA	CBUD_0105	-	glutamate--cysteine ligase
94	 46.17	0	100753..101718	+	321	154707771	gshB	CBUD_0106	-	glutathione synthetase
95	 44.58	0	102125..102889	+	254	154706977	-	CBUD_0108	-	SAM-dependent methyltransferase
96	 34.11	-1	102872..104155	-	427	154707531	-	CBUD_0107	-	hypothetical ATPase
97	 50.00	+1	104300..104719	-	139	209363679	-	CBUD_0109	-	HesB protein family
98	 40.65	0	104803..105444	+	213	209363680	def2	CBUD_0110	-	peptide deformylase
99	 40.95	0	105441..105860	+	139	154707724	-	CBUD_0112	-	hypothetical membrane spanning protein
100	 51.15	+1	105857..106030	-	57	154707052	-	CBUD_0111	-	rubredoxin
42.75	MEAN

4.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.