IslandPath Analysis: Francisella tularensis subsp. tularensis SCHU S4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.63   STD DEV: 3.37
Francisella tularensis subsp. tularensis Schu 4, complete genome - 1..1892819
1603 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.90	0	1..1521	+	506	56707188	dnaA	FTT0001	-	chromosomal replication initiator protein dnaA
2	 27.90	-1	1558..2661	+	367	56707189	dnaN	FTT0002	-	DNA polymerase III, beta chain
3	 32.36	0	3204..3988	-	261	56707190	isftu1	FTT0004c	-	transposase
4	 34.08	0	4661..5869	+	402	56707191	-	FTT0006	-	MFS superfamily proline/ betaine transporter
5	 35.02	0	6044..7822	+	592	56707192	aspS	FTT0007	-	aspartyl-tRNA synthetase
6	 30.27	0	11434..12216	-	260	56707193	-	FTT0013c	-	lipoprotein
7	 33.33	0	12456..12854	-	132	56707194	-	FTT0014c	-	hypothetical protein
8	 35.72	0	13182..14480	+	432	56707195	purB	FTT0015	-	adenylosuccinate lyase
9	 30.92	0	14514..15092	+	192	56707196	-	FTT0016	-	hypothetical protein
10	 29.25	-1	15179..16720	+	513	56707197	-	FTT0017	-	hypothetical protein
11	 36.87	+1	16728..17801	+	357	56707198	-	FTT0018	-	secretion protein
12	 31.91	0	17884..18165	+	93	56707199	gatC	FTT0019	-	Glu-tRNAGln amidotransferase C subunit
13	 37.55	+1	18174..19619	+	481	56707200	gatA	FTT0020	-	glutamyl-tRNA(Gln) amidotransferase subunit A
14	 36.78	+1	19622..21043	+	473	56707201	gatB	FTT0021	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
15	 30.39	0	21058..21465	+	135	56707202	-	FTT0022	-	hypothetical protein
16	 32.54	0	21481..22362	-	293	56707203	-	FTT0023c	-	lipase/acyltransferase
17	 27.25	-1	22630..22974	-	114	56707204	-	FTT0024c	-	hypothetical protein
18	 33.99	0	23022..24551	-	509	56707205	-	FTT0025c	-	hypothetical protein
19	 34.01	0	24636..25826	-	396	56707206	-	FTT0026c	-	hypothetical protein
20	 32.85	0	25842..27095	-	417	56707207	lysA	FTT0027c	-	diaminopimelate decarboxylase
21	 31.04	0	27088..28350	-	420	56707208	-	FTT0028c	-	hypothetical protein
22	 32.50	0	28357..30276	-	639	56707209	-	FTT0029c	-	hypothetical protein
23	 32.86	0	30529..30951	-	140	56707210	fur	FTT0030c	-	ferric uptake regulation protein
24	 36.34	+1	31160..31558	+	132	56707211	nuoA	FTT0031	-	NADH dehydrogenase I, A subunit
25	 43.61	+2	31549..32025	+	158	56707212	nuoB	FTT0032	-	NADH dehydrogenase subunit B
26	 36.71	+1	32022..32672	+	216	56707213	nuoC	FTT0033	-	NADH dehydrogenase I
27	 38.76	+1	32694..33947	+	417	56707214	nuoD	FTT0034	-	NADH dehydrogenase subunit D
28	 36.20	+1	33957..34445	+	162	56707215	nuoE	FTT0035	-	NADH dehydrogenase I, E subunit
29	 40.39	+2	34452..35726	+	424	56707216	nuoF	FTT0036	-	NADH dehydrogenase I, F subunit
30	 36.50	+1	35744..38110	+	788	56707217	nuoG	FTT0037	-	NADH dehydrogenase subunit G
31	 36.60	+1	38112..39122	+	336	56707218	nuoH	FTT0038	-	NADH dehydrogenase I, H subunit
32	 34.97	0	39136..39624	+	162	56707219	nuoI	FTT0039	-	NADH dehydrogenase subunit I
33	 34.98	0	39629..40234	+	201	56707220	nuoJ	FTT0040	-	NADH dehydrogenase I, J subunit
34	 33.03	0	40212..40544	+	110	56707221	nuoK	FTT0041	-	NADH dehydrogenase I, K subunit
35	 34.98	0	40554..42563	+	669	56707222	nuoL	FTT0042	-	NADH dehydrogenase I, L subunit
36	 36.35	+1	42589..44178	+	529	56707223	nuoM	FTT0043	-	NADH dehydrogenase I, M subunit
37	 35.46	0	44188..45645	+	485	56707224	nuoN	FTT0044	-	NADH dehydrogenase I, N subunit
38	 30.77	0	45721..45915	+	64	56707225	-	FTT0045	-	hypothetical protein
39	 35.75	0	47462..48496	+	344	56707226	hemE	FTT0047	-	uroporphyrinogen decarboxylase
40	 35.29	0	48716..49174	+	152	56707227	-	FTT0048	-	hypothetical protein
41	 34.35	0	49192..50661	+	489	56707228	nusA	FTT0049	-	transcription elongation factor NusA
42	 37.98	+1	50700..53240	+	846	56707229	infB	FTT0050	-	translation initiation factor IF-2
43	 32.41	0	53243..53674	+	143	56707230	rbfA	FTT0051	-	ribosome-binding factor A
44	 34.68	0	53682..54947	+	421	56707231	hisS	FTT0052	-	histidyl-tRNA synthetase
45	 34.03	0	54954..56252	+	432	56707232	-	FTT0053	-	major facilitator transporter
46	 29.59	0	56255..57322	+	355	56707233	-	FTT0054	-	ATPase
47	 34.19	0	57315..58244	+	309	56707234	rluC	FTT0055	-	ribosomal large subunit pseudouridine synthase C
48	 35.10	0	58246..59550	-	434	56707235	-	FTT0056c	-	major facilitator transporter
49	 26.85	-1	59627..60058	+	143	56707236	-	FTT0057	-	hypothetical protein
50	 37.12	+1	60111..60902	+	263	56707237	atpB	FTT0058	-	F0F1 ATP synthase subunit A
51	 41.18	+2	60953..61258	+	101	56707238	atpE	FTT0059	-	F0F1 ATP synthase subunit C
52	 37.79	+1	61304..61774	+	156	56707239	atpF	FTT0060	-	F0F1 ATP synthase subunit B
53	 32.57	0	61794..62318	+	174	56707240	atpH	FTT0061	-	F0F1 ATP synthase subunit delta
54	 38.59	+1	62337..63878	+	513	56707241	atpA	FTT0062	-	F0F1 ATP synthase subunit alpha
55	 34.89	0	63893..64789	+	298	56707242	atpG	FTT0063	-	F0F1 ATP synthase subunit gamma
56	 38.78	+1	64799..66175	+	458	56707243	atpD	FTT0064	-	F0F1 ATP synthase subunit beta
57	 38.36	+1	66188..66625	+	145	56707244	atpC	FTT0065	-	F0F1 ATP synthase subunit epsilon
58	 31.89	0	66836..69679	+	947	56707245	-	FTT0066	-	hypothetical protein
59	 35.15	0	69696..70025	-	109	56707246	-	FTT0067c	-	glutaredoxin-like protein
60	 33.85	0	70161..70739	+	192	56707247	sodB	FTT0068	-	superoxide dismutase (Fe)
61	 29.03	-1	70747..70932	-	61	56707248	-	FTT0069c	-	hypothetical protein
62	 32.78	0	70944..72209	-	421	56707249	ampG	FTT0070c	-	major facilitator superfamily tranporter
63	 36.47	+1	72298..73572	-	424	56707250	gltA	FTT0071c	-	citrate synthase
64	 35.02	0	73815..74288	+	157	56707251	sdhC	FTT0072	-	succinate dehydrogenase, cytochrome b556
65	 34.96	0	74264..74632	+	122	56707252	sdhD	FTT0073	-	succinate dehydrogenase hydrophobic membrane anchor protein
66	 39.97	+2	74645..76438	+	597	56707253	sdhA	FTT0074	-	succinate dehydrogenase, catalytic and NAD/flavoprotein subunit
67	 36.18	+1	76456..77157	+	233	56707254	sdhB	FTT0075	-	succinate dehydrogenase iron-sulfur subunit
68	 36.27	+1	77175..80000	+	941	56707255	kgd	FTT0076	-	alpha-ketoglutarate decarboxylase
69	 37.96	+1	80026..81495	+	489	56707256	sucB	FTT0077	-	dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex
70	 39.02	+1	81535..82062	+	175	56707257	apt	FTT0078	-	adenine phosphoribosyltransferase
71	 34.68	0	82073..83404	+	443	56707258	mrsA	FTT0079	-	phosphoglucosamine mutase
72	 34.65	0	83407..84168	+	253	56707259	tpiA	FTT0080	-	triosephosphate isomerase
73	 38.98	+1	84156..84509	+	117	56707260	secG	FTT0081	-	preprotein translocase subunit SecG
74	 33.12	0	85720..86196	+	158	56707261	-	FTT0083	-	hypothetical protein
75	 30.62	0	86193..87335	-	380	56707262	hemN	FTT0084c	-	oxygen-independent coproporphyrinogen III oxidase
76	 27.25	-1	87340..87717	-	125	56707263	-	FTT0085c	-	hypothetical protein
77	 31.40	0	87787..88665	+	292	56707264	-	FTT0086	-	hypothetical protein
78	 37.28	+1	88770..91583	+	937	56707265	acnA	FTT0087	-	aconitate hydratase
79	 36.05	+1	91678..92706	+	342	56707266	pilT	FTT0088	-	Type IV pili nucleotide-binding protein
80	 25.50	-2	93768..94214	-	148	56707267	-	FTT0090c	-	hypothetical protein
81	 30.74	0	94225..95187	-	320	56707268	appB	FTT0091c	-	cytochrome oxidase bd-II, subunit II
82	 32.77	0	96803..97684	+	293	56707269	-	FTT0093	-	hypothetical protein
83	 31.65	0	97681..99108	-	475	56707270	qseC	FTT0094c	-	sensor histidine kinase
84	 33.54	0	99224..100180	+	318	56707271	-	FTT0095	-	hypothetical protein
85	 34.20	0	100422..101462	+	346	56707272	-	FTT0096	-	hypothetical protein
86	 31.14	0	101596..102141	+	181	56707273	-	FTT0097	-	hypothetical protein
87	 32.36	0	102215..102999	-	261	56707274	isftu1	FTT0098c	-	transposase
88	 29.03	-1	103101..103844	+	247	56707275	isftu2	FTT0099	-	transposase
89	 27.12	-1	104514..105527	+	337	56707276	-	FTT0101	-	hypothetical protein
90	 28.01	-1	106972..107553	-	193	56707277	-	FTT0103c	-	hypothetical protein
91	 34.82	0	107798..109075	-	425	56707278	-	FTT0104c	-	major facilitator transporter
92	 35.81	0	109207..112320	-	1037	56707279	-	FTT0105c	-	AcrB/AcrD/AcrF family transporter
93	 33.48	0	112320..113693	-	457	56707280	-	FTT0106c	-	RND efflux transporter
94	 28.86	-1	113706..114197	-	163	56707281	dsbB	FTT0107c	-	disulfide bond formation protein
95	 32.59	0	114237..115319	-	360	56707282	cca	FTT0108c	-	tRNA CCA-pyrophosphorylase
96	 34.43	0	115424..117253	+	609	56707283	valA	FTT0109	-	Lipid A transport protein, ABC transporter,ATP-binding and membrane protein
97	 32.61	0	117259..118227	+	322	56707284	valB	FTT0110	-	tetraacyldisaccharide 4'-kinase
98	 35.00	0	118323..121016	+	897	56707285	polA	FTT0111	-	DNA polymerase I
99	 34.62	0	121036..121812	+	258	56707286	-	FTT0112	-	pantothenate kinase
100	 36.63	+1	121817..123061	+	414	56707287	deoB	FTT0113	-	phosphopentomutase
32.63	MEAN

3.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.