IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.66   STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.70	-2	261..1640	+	459	189423083	-	Glov_0001	-	Chromosomal replication initiator DnaA
2	 43.25	-2	1870..2988	+	372	189423084	-	Glov_0002	-	DNA polymerase III, beta subunit
3	 49.86	0	2996..4102	+	368	189423085	-	Glov_0003	-	DNA replication and repair protein RecF
4	 55.38	0	4099..6507	+	802	189423086	-	Glov_0004	-	DNA gyrase, B subunit
5	 42.78	-2	6869..7249	+	126	189423087	-	Glov_0005	-	hypothetical protein
6	 52.54	0	7397..8479	-	360	189423088	-	Glov_0006	-	transposase IS4 family protein
7	 53.60	0	8837..9946	-	369	189423089	-	Glov_0007	-	transposase IS116/IS110/IS902 family protein
8	 51.90	0	10814..11815	-	333	189423090	-	Glov_0009	-	cell division protein FtsZ
9	 47.97	-1	11831..12718	-	295	189423091	-	Glov_0010	-	hypothetical protein
10	 50.97	0	12879..13751	-	290	189423092	-	Glov_0011	-	hypothetical protein
11	 49.06	-1	13873..15354	+	493	189423093	-	Glov_0012	-	hypothetical protein
12	 49.68	0	15388..16017	+	209	189423094	-	Glov_0013	-	hypothetical protein
13	 29.79	-2	16041..16379	+	112	189423095	-	Glov_0014	-	hypothetical protein
14	 35.44	-2	16415..16651	+	78	189423096	-	Glov_0015	-	hypothetical protein
15	 52.34	0	16986..18500	+	504	189423097	-	Glov_0016	-	Integrase catalytic region
16	 50.95	0	18487..19224	+	245	189423098	-	Glov_0017	-	IstB domain protein ATP-binding protein
17	 55.07	0	19659..20486	-	275	189423099	-	Glov_0018	-	Integrase catalytic region
18	 53.92	0	20483..20788	-	101	189423100	-	Glov_0019	-	transposase IS3/IS911 family protein
19	 47.12	-1	20816..21214	-	132	189423101	-	Glov_0020	-	hypothetical protein
20	 47.04	-1	21281..22549	-	422	189423102	-	Glov_0021	-	beta-lactamase domain protein
21	 45.12	-1	22581..23522	-	313	189423103	-	Glov_0022	-	hypothetical protein
22	 45.50	-1	23532..25043	-	503	189423104	-	Glov_0023	-	hypothetical protein
23	 50.65	0	25100..26092	-	330	189423105	-	Glov_0024	-	transcriptional regulator-like protein
24	 50.54	0	26238..26609	-	123	189423106	-	Glov_0025	-	hypothetical protein
25	 46.60	-1	26716..27672	-	318	189423107	-	Glov_0026	-	DnaB domain protein
26	 56.69	0	28298..30844	+	848	189423108	-	Glov_0027	-	DNA gyrase, A subunit
27	 57.89	0	30849..32444	+	531	189423109	-	Glov_0028	-	hypothetical protein
28	 59.48	0	32441..33442	+	333	189423110	-	Glov_0029	-	Glycerol-3-phosphate dehydrogenase (NAD(P)(+))
29	 55.51	0	33660..34475	-	271	189423111	-	Glov_0030	-	OmpA/MotB domain protein
30	 53.47	0	34487..35236	-	249	189423112	-	Glov_0031	-	MotA/TolQ/ExbB proton channel
31	 54.09	0	35240..35557	-	105	189423113	-	Glov_0032	-	flagellar FlbD family protein
32	 57.10	0	35648..36745	-	365	189423114	-	Glov_0033	-	cobyrinic acid a,c-diamide synthase family protein
33	 51.07	0	36748..37260	-	170	189423115	-	Glov_0034	-	type IV pilus assembly PilZ
34	 57.21	0	37416..37616	+	66	189423116	-	Glov_0035	-	thiamine biosynthesis protein ThiS
35	 57.69	0	37620..38399	+	259	189423117	-	Glov_0036	-	thiazole biosynthesis family protein
36	 63.93	+1	38396..39016	+	206	189423118	-	Glov_0037	-	thiamine-phosphate pyrophosphorylase
37	 55.59	0	39136..40092	+	318	189423119	-	Glov_0038	-	conserved hypothetical radical SAM protein
38	 50.18	0	40278..41126	+	282	189423120	-	Glov_0039	-	hypothetical protein
39	 59.06	0	41186..42289	+	367	189423121	-	Glov_0040	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
40	 57.43	0	42391..42693	+	100	189423122	-	Glov_0041	-	hypothetical protein
41	 51.04	0	42765..42956	+	63	189423123	-	Glov_0042	-	hypothetical protein
42	 57.76	0	42982..45036	-	684	189423124	-	Glov_0043	-	TonB-dependent receptor
43	 56.36	0	45211..46083	+	290	189423125	-	Glov_0044	-	ABC-type phosphate/phosphonate transport system periplasmic component-like protein
44	 60.05	+1	46083..48077	+	664	189423126	-	Glov_0045	-	diguanylate cyclase/phosphodiesterase
45	 62.13	+1	48074..48514	+	146	189423127	-	Glov_0046	-	D-tyrosyl-tRNA(Tyr) deacylase
46	 56.49	0	48520..48804	+	94	189423128	-	Glov_0047	-	hypothetical protein
47	 56.75	0	48991..49605	+	204	189423129	-	Glov_0048	-	protein tyrosine/serine phosphatase
48	 57.44	0	49624..50739	-	371	189423130	-	Glov_0049	-	metal dependent phosphohydrolase
49	 62.85	+1	50925..51632	+	235	189423131	-	Glov_0050	-	two component transcriptional regulator, winged helix family
50	 64.19	+1	51629..52798	+	389	189423132	-	Glov_0051	-	integral membrane sensor signal transduction histidine kinase
51	 52.75	0	52803..53312	-	169	189423133	-	Glov_0052	-	hypothetical protein
52	 62.68	+1	53394..54749	-	451	189423134	-	Glov_0053	-	MATE efflux family protein
53	 59.17	0	54819..57725	-	968	189423135	-	Glov_0054	-	Tetratricopeptide TPR_2 repeat protein
54	 57.23	0	57808..58305	+	165	189423136	-	Glov_0055	-	hypothetical protein
55	 63.59	+1	58353..59588	-	411	189423137	-	Glov_0056	-	major facilitator superfamily MFS_1
56	 56.18	0	59588..60541	-	317	189423138	-	Glov_0057	-	metal dependent phosphohydrolase
57	 57.26	0	60648..61232	-	194	189423139	-	Glov_0058	-	DNA-3-methyladenine glycosylase I
58	 49.54	-1	61396..61722	-	108	189423140	-	Glov_0059	-	HicB family protein
59	 43.92	-2	61719..61973	-	84	189423141	-	Glov_0060	-	hypothetical protein
60	 33.83	-2	62105..62902	-	265	189423142	-	Glov_0061	-	hypothetical protein
61	 55.07	0	63332..65194	-	620	189423143	-	Glov_0062	-	Zn-dependent protease-like protein
62	 59.24	0	65197..66651	-	484	189423144	-	Glov_0063	-	peptidase U62 modulator of DNA gyrase
63	 58.57	0	66711..67340	-	209	189423145	-	Glov_0064	-	transglutaminase domain protein
64	 61.89	+1	67385..68578	-	397	189423146	-	Glov_0065	-	acetylornithine and succinylornithine aminotransferase
65	 46.67	-1	68932..70086	-	384	189423147	-	Glov_0066	-	hypothetical protein
66	 53.72	0	70176..70592	-	138	189423148	-	Glov_0067	-	PilT protein domain protein
67	 50.41	0	70589..70834	-	81	189423149	-	Glov_0068	-	hypothetical protein
68	 63.96	+1	70932..72152	-	406	189423150	-	Glov_0069	-	major facilitator superfamily MFS_1
69	 62.04	+1	72284..73450	-	388	189423151	-	Glov_0070	-	Phosphoribosylaminoimidazolecarboxamide formyltransferase
70	 54.71	0	73462..74640	-	392	189423152	-	Glov_0071	-	integral membrane sensor signal transduction histidine kinase
71	 56.60	0	74731..75366	-	211	189423153	-	Glov_0072	-	membrane protein-like protein
72	 59.97	+1	75366..76067	-	233	189423154	-	Glov_0073	-	hypothetical protein
73	 64.51	+1	76093..76416	-	107	189423155	-	Glov_0074	-	protein of unknown function DUF1634
74	 60.41	+1	76413..77243	-	276	189423156	-	Glov_0075	-	protein of unknown function DUF81
75	 63.27	+1	77496..78407	-	303	189423157	-	Glov_0077	-	cyclase family protein
76	 57.54	0	78461..79150	-	229	189423158	-	Glov_0078	-	hypothetical protein
77	 60.05	+1	79188..79958	-	256	189423159	-	Glov_0079	-	hypothetical protein
78	 58.23	0	80162..80635	-	157	189423160	-	Glov_0080	-	hypothetical protein
79	 58.40	0	80681..81406	-	241	189423161	-	Glov_0081	-	PEGA domain protein
80	 60.63	+1	81697..82773	+	358	189423162	-	Glov_0082	-	ribosome small subunit-dependent GTPase A
81	 56.31	0	82779..83261	+	160	189423163	-	Glov_0083	-	GCN5-related N-acetyltransferase
82	 61.42	+1	83264..83854	+	196	189423164	-	Glov_0084	-	hypothetical protein
83	 56.40	0	83876..84586	+	236	189423165	-	Glov_0085	-	Methyltransferase type 11
84	 62.60	+1	84641..85255	+	204	189423166	-	Glov_0086	-	Lysine exporter protein (LYSE/YGGA)
85	 56.99	0	85390..85854	-	154	189423167	-	Glov_0087	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
86	 58.85	0	85931..87439	-	502	189423168	-	Glov_0088	-	protein of unknown function DUF853 NPT hydrolase putative
87	 56.01	0	87450..87740	-	96	189423169	-	Glov_0089	-	YCII-related
88	 60.50	+1	87813..88574	-	253	189423170	-	Glov_0090	-	CoA-substrate-specific enzyme activase
89	 57.75	0	88577..89866	-	429	189423171	-	Glov_0091	-	2-hydroxyglutaryl-CoA dehydratase D-component
90	 39.40	-2	90119..90991	-	290	189423172	-	Glov_0092	-	hypothetical protein
91	 55.39	0	91105..92319	-	404	189423173	-	Glov_0093	-	filamentation induced by cAMP protein Fic
92	 58.74	0	92490..93422	-	310	189423174	-	Glov_0094	-	hypothetical protein
93	 63.13	+1	93523..94710	-	395	189423175	-	Glov_0095	-	major facilitator superfamily MFS_1
94	 62.20	+1	94719..95726	-	335	189423176	-	Glov_0096	-	aldo/keto reductase
95	 57.75	0	95816..97621	-	601	189423177	-	Glov_0097	-	beta-lactamase
96	 55.02	0	97652..97960	-	102	189423178	-	Glov_0098	-	hypothetical protein
97	 57.58	0	98082..98609	+	175	189423179	-	Glov_0099	-	hypothetical protein
98	 52.58	0	98619..98831	+	70	189423180	-	Glov_0100	-	transcriptional regulator, XRE family
99	 60.35	+1	98947..99849	-	300	189423181	-	Glov_0101	-	Pirin domain protein
100	 62.75	+1	99871..100329	-	152	189423182	-	Glov_0102	-	hypothetical protein
54.66	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.