IslandPath Analysis: Arthrobacter aurescens TC1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.44   STD DEV: 2.70
Arthrobacter aurescens TC1, complete genome - 1..4597686
4041 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.25	0	1..1419	+	472	119964126	dnaA	AAur_0001	-	chromosomal replication initiator protein DnaA
2	 61.42	0	1995..3119	+	374	119964048	dnaN	AAur_0002	-	DNA polymerase III, beta subunit
3	 61.13	0	3224..4108	+	294	161897606	-	AAur_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 61.42	0	4132..5331	+	399	119961476	recF	AAur_0004	-	recombination protein F
5	 63.78	0	5318..5872	+	184	119964264	-	AAur_0005	-	putative protein of unknown function (DUF721)
6	 61.52	0	6210..8288	+	692	119963753	gyrB	AAur_0006	-	DNA gyrase subunit B
7	 61.24	0	8351..11020	+	889	119961287	gyrA	AAur_0007	-	DNA gyrase subunit A
8	 65.28	+1	11017..11736	+	239	119962378	-	AAur_0008	-	putative integral membrane protein
9	 54.76	-2	11965..12090	+	41	119961562	-	AAur_0010	-	hypothetical protein
10	 64.33	0	12349..13290	+	313	119963049	-	AAur_0012	-	integral membrane protein
11	 60.16	0	13309..14184	-	291	119963518	-	AAur_0013	-	glycosyl transferase domain-containing protein
12	 62.24	0	14329..15300	-	323	119964468	-	AAur_0014	-	hypothetical protein
13	 59.85	0	15455..15997	+	180	119963536	-	AAur_0015	-	putative peptidylprolyl cis-trans isomerase
14	 61.87	0	16019..16873	+	284	119962891	-	AAur_0017	-	rhomboid family membrane protein
15	 59.85	0	16860..17255	-	131	119961930	-	AAur_0016	-	hypothetical protein
16	 51.58	-2	17533..17943	+	136	119962333	-	AAur_0018	-	hypothetical protein
17	 60.50	0	18212..18811	-	199	119963906	-	AAur_0019	-	putative DNA-3-methyladenine glycosylase I
18	 60.54	0	18916..19650	-	244	119963370	-	AAur_0020	-	putative DNA repair protein
19	 63.04	0	19647..20198	-	183	119962805	-	AAur_0021	-	methylated-DNA-[protein]-cysteine S-methyltransferase
20	 64.13	0	20276..20788	-	170	119962042	-	AAur_0022	-	putative RNA polymerase sigma (70) factor
21	 58.43	-1	20803..21312	-	169	119961722	-	AAur_0023	-	methylated-DNA-[protein]-cysteine S-methyltransferase
22	 61.84	0	21358..21792	-	144	119960915	-	AAur_0024	-	hypothetical protein
23	 62.33	0	21769..22599	+	276	119960605	-	AAur_0025	-	putative sortase family protein
24	 54.39	-2	22603..22773	+	56	119963866	-	AAur_0026	-	hypothetical protein
25	 62.31	0	22770..23411	+	213	119963327	-	AAur_0027	-	anthranilate synthase component II
26	 62.90	0	23514..25427	-	637	119962857	-	AAur_0028	-	putative serine/threonine protein kinase
27	 64.55	0	25438..27279	-	613	119963247	-	AAur_0029	-	serine/threonine kinase domain-containing protein
28	 59.05	-1	27276..28733	-	485	119962661	-	AAur_0030	-	penicillin binding protein transpeptidase domain-containing protein
29	 61.01	0	28730..30160	-	476	119960501	-	AAur_0031	-	putative cell division protein FtsW
30	 63.52	0	30157..31809	-	550	119961940	-	AAur_0032	-	protein phosphatase 2C domain-containing protein
31	 61.35	0	31870..32358	-	162	119961072	-	AAur_0033	-	FHA domain-containing protein
32	 61.29	0	32355..33098	-	247	119963308	-	AAur_0034	-	FHA domain-containing protein
33	 65.09	0	33757..34455	-	232	119962859	-	AAur_0036	-	GntR family transcriptional regulator
34	 63.21	0	34466..35593	-	375	119964208	clcB	AAur_0037	-	mandelate racemase
35	 58.43	-1	35644..35898	+	84	119962848	-	AAur_0038	-	hypothetical protein
36	 59.26	-1	36339..36851	-	170	119963333	-	AAur_0039	-	D-mannose binding-like domain-containing protein
37	 60.59	0	37395..37970	+	191	119961992	-	AAur_0040	-	putative RNA polymerase sigma (70) factor
38	 60.00	0	37967..38791	+	274	119961589	-	AAur_0041	-	hypothetical protein
39	 64.16	0	38817..39533	-	238	119960721	-	AAur_0042	-	TetR family tetracycline repressor protein
40	 63.98	0	39640..41016	+	458	119961160	puo	AAur_0043	-	putrescine oxidase
41	 66.33	+1	41107..42003	+	298	119961252	-	AAur_0044	-	universal stress family domain-containing protein
42	 61.74	0	42027..43529	+	500	119962416	-	AAur_0045	-	putative amino acid permease
43	 66.31	+1	43535..44092	-	185	119963227	-	AAur_0046	-	hypothetical protein
44	 57.99	-1	44207..44644	+	145	119963541	-	AAur_0047	-	putative glyoxalase family protein
45	 66.00	+1	44700..45149	-	149	119964133	-	AAur_0048	-	hypothetical protein
46	 63.00	0	45255..45908	+	217	119961472	-	AAur_0049	-	LysR family transcriptional regulator
47	 61.52	0	46016..46714	-	232	119961839	-	AAur_0050	-	GntR family transcriptional regulator
48	 63.46	0	46896..47582	+	228	119962677	-	AAur_0051	-	putative LamB/YcsF family protein
49	 63.19	0	47630..48979	+	449	119960869	-	AAur_0052	-	major facilitator transporter
50	 66.07	+1	48986..50650	+	554	119962361	-	AAur_0053	-	urea carboxylase/allophanate hydrolase domain-containing protein
51	 63.94	0	50658..52418	+	586	119961766	-	AAur_0054	-	putative Acetyl-CoA carboxylase alpha chain
52	 62.98	0	52419..53666	-	415	119964367	-	AAur_0055	-	putative xylitol oxidase
53	 64.91	0	53835..54800	+	321	119964143	-	AAur_0056	-	LacI family transcriptional regulator
54	 64.26	0	54801..55796	-	331	119963747	-	AAur_0057	-	putative arsenite efflux pump
55	 60.45	0	55903..57399	-	498	119962146	-	AAur_0058	-	putative sulfate transporter family protein
56	 62.33	0	57422..58528	-	368	119961861	-	AAur_0059	-	putative RelA / SpoT family protein
57	 63.99	0	58639..59460	+	273	119960729	-	AAur_0060	-	hypothetical protein
58	 65.92	+1	59500..60435	+	311	119964360	-	AAur_0061	-	fructokinase
59	 62.23	0	60451..61509	-	352	119963914	-	AAur_0062	-	putative glutathione s-transferase
60	 63.47	0	61592..62404	+	270	119962762	-	AAur_0064	-	putative haloacid dehalogenase-like hydrolase
61	 65.48	+1	62401..63330	-	309	119962084	-	AAur_0063	-	putative integral membrane protein
62	 64.48	0	63327..64193	-	288	119962391	-	AAur_0065	-	putative NAD dependent epimerase/dehydratase-related protein
63	 65.06	0	64302..64613	-	103	119961392	-	AAur_0066	-	hypothetical protein
64	 63.28	0	64612..65409	+	265	119963853	-	AAur_0067	-	putative glycerophosphoryl diester phosphodiesterase
65	 61.66	0	65451..67268	-	605	119962951	-	AAur_0068	-	beta-glucuronidase
66	 62.72	0	67343..68305	+	320	119961656	-	AAur_0069	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
67	 66.18	+1	68448..69689	+	413	119960497	-	AAur_0070	-	glycerate kinase
68	 64.61	0	69690..69932	-	80	119961046	-	AAur_0071	-	hypothetical protein
69	 62.16	0	70027..70470	+	147	119963646	-	AAur_0072	-	hypothetical protein
70	 60.70	0	70852..71973	+	373	119964506	-	AAur_0073	-	hypothetical protein
71	 57.46	-1	71980..72837	-	285	119964484	-	AAur_0074	-	hypothetical protein
72	 54.59	-2	72901..73347	-	148	119962795	-	AAur_0075	-	hypothetical protein
73	 54.00	-2	73344..73793	-	149	119962843	-	AAur_0076	-	hypothetical protein
74	 60.19	0	74102..74317	-	71	119964178	-	AAur_0077	-	hypothetical protein
75	 64.21	0	74391..75653	-	420	119964005	-	AAur_0078	-	major facilitator transporter
76	 63.50	0	75743..76657	+	304	119961240	-	AAur_0079	-	putative transcriptional regulator
77	 59.24	-1	76705..77256	-	183	119963498	-	AAur_0080	-	riboflavin biosynthesis protein RibD
78	 58.21	-1	77593..79674	+	693	119964263	-	AAur_0081	-	FG-GAP repeat-containing protein
79	 63.14	0	79767..80333	-	188	119963182	-	AAur_0082	-	PfpI family intracellular peptidase
80	 65.29	+1	81151..82239	-	362	119961105	-	AAur_0083	-	oxidoreductase family protein
81	 62.25	0	82291..83310	-	339	119961093	-	AAur_0084	-	LacI family transcriptional regulator
82	 63.51	0	83355..84812	-	485	119960542	bglA	AAur_0085	-	beta-glucosidase
83	 62.79	0	84812..85714	-	300	119962269	-	AAur_0086	-	putative ABC transporter sugar permease
84	 60.75	0	85711..86808	-	365	119963363	-	AAur_0087	-	putative ABC-type sugar transport system, permease component
85	 62.34	0	86872..88188	-	438	119963952	-	AAur_0088	-	putative extracellular sugar-binding protein
86	 61.21	0	88641..90107	+	488	119963342	-	AAur_0089	-	putative lysozyme like protein
87	 64.38	0	90156..91511	-	451	119962064	ncs2	AAur_0090	-	uracil-xanthine permease
88	 62.57	0	91586..94075	-	829	119960698	-	AAur_0091	-	acyltransferase domain-containing protein
89	 65.18	+1	94280..94885	+	201	119960609	-	AAur_0092	-	hypothetical protein
90	 63.51	0	95128..95634	+	168	119964517	-	AAur_0093	-	hypothetical protein
91	 64.28	0	95757..97430	-	557	119962162	pgm	AAur_0094	-	phosphoglucomutase
92	 63.89	0	97615..98370	-	251	119960897	-	AAur_0095	-	short chain dehydrogenase/reductase family oxidoreductase
93	 65.56	+1	98563..99192	+	209	119962264	-	AAur_0096	-	hypothetical protein
94	 62.54	0	99277..100803	-	508	119961800	-	AAur_0097	-	dipeptide/tripeptide permease (peptide:H+ symporter)
95	 63.71	0	102260..103003	-	247	119961031	-	AAur_0099	-	S51 family peptidase
96	 62.39	0	103158..103484	+	108	119962407	-	AAur_0100	-	putative rhodanese-related sulfurtransferase
97	 65.70	+1	103517..104449	+	310	119961958	pheA	AAur_0101	-	prephenate dehydratase
98	 62.24	0	104781..105842	-	353	119960489	-	AAur_0102	-	diacylglycerol kinase catalytic subunit
99	 62.84	0	105955..107235	+	426	119963396	serS	AAur_0103	-	seryl-tRNA synthetase
100	 59.38	-1	107266..108294	-	342	119962041	-	AAur_0104	-	hypothetical protein
62.44	MEAN

2.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.