IslandPath Analysis: Lactobacillus sakei subsp. sakei 23K



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.46   STD DEV: 3.39
Lactobacillus sakei subsp. sakei 23K, complete genome - 1..1884661
1879 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.76	0	210..1556	+	448	81427617	dnaA	LSA0001	-	chromosomal replication initiation protein A
2	 41.49	0	1734..2873	+	379	81427618	dnaN	LSA0002	-	DNA-directed DNA polymerase III, beta subunit
3	 41.67	0	3116..3343	+	75	81427619	-	LSA0003	-	hypothetical protein
4	 42.91	0	3350..4477	+	375	81427620	recF	LSA0004	-	recombination protein F
5	 43.80	0	4514..6490	+	658	81427621	gyrB	LSA0005	-	DNA gyrase, B subunit
6	 44.52	0	6538..9111	+	857	81427622	gyrA	LSA0006	-	DNA gyrase, A subunit
7	 36.70	-1	9348..9644	+	98	81427623	rpsF	LSA0007	-	30S ribosomal protein S6
8	 42.30	0	9683..10195	+	170	81427624	ssb	LSA0008	-	single-stranded DNA binding protein (Ssb)
9	 42.92	0	10226..10465	+	79	81427625	rpsR	LSA0009	-	30S ribosomal protein S18
10	 44.10	0	10683..12716	+	677	81427626	-	LSA0010	-	putative nucleotide-binding phosphoesterase
11	 41.28	0	12737..13189	+	150	81427627	rplI	LSA0011	-	50S ribosomal protein L9
12	 44.52	0	13323..14717	+	464	81427628	dnaC	LSA0012	-	replicative DNA helicase C
13	 44.82	0	15068..16408	-	446	81427629	-	LSA0013	-	putative nucleobase: cation symporter
14	 41.97	0	16777..17517	+	246	81427630	gidB	LSA0014	-	glucose-inhibited division protein B
15	 39.44	0	17517..18416	+	299	81427631	parB1	LSA0015	-	chromosome partitioning protein, DNA-binding exonuclease
16	 40.49	0	18428..19195	+	255	81427632	parA	LSA0016	-	chromosome partitioning ATPase
17	 43.26	0	19185..20060	+	291	81427633	parB2	LSA0017	-	chromosome partitioning protein, DNA-binding exonuclease
18	 42.57	0	20079..20327	+	82	81427634	-	LSA0018	-	hypothetical protein
19	 43.78	0	20351..21451	+	366	81427635	-	LSA0019	-	translation-associated GTPase
20	 41.33	0	21469..22143	+	224	81427636	-	LSA0020	-	integral membrane protein
21	 44.71	0	22180..22944	+	254	81427637	-	LSA0021	-	putative lipase/esterase
22	 42.45	0	23325..23993	+	222	81427638	-	LSA0022	-	haloacid dehalogenase family hydrolase
23	 43.80	0	23990..24457	-	155	81427639	-	LSA0023	-	hypothetical protein
24	 42.74	0	25476..26102	-	208	81427641	-	LSA0025	-	hypothetical protein
25	 38.29	0	26115..26558	-	147	81427642	-	LSA0026	-	hypothetical protein
26	 37.98	-1	26675..27040	+	121	81427643	-	LSA0027	-	hypothetical protein
27	 44.60	0	27150..28010	+	286	81427644	-	LSA0028	-	hypothetical protein
28	 41.82	0	28058..29401	-	447	81427645	-	LSA0029	-	hemolysinC family Mg(2+)/Co(2+) transport protein
29	 44.37	0	29633..30484	-	283	81427646	-	LSA0030	-	putative aldo/keto reductase (oxidoreductase)
30	 46.31	+1	30568..31800	-	410	81427647	-	LSA0031	-	hypothetical protein
31	 39.62	0	31874..32239	-	121	81427648	-	LSA0032	-	hypothetical protein
32	 48.51	+2	32333..33472	-	379	81427649	-	LSA0033	-	MFS family transporter
33	 46.98	+1	33536..34693	-	385	81427650	-	LSA0035	-	putative Iron-sulfur cluster-binding protein
34	 44.87	+1	34718..35506	-	262	81427651	-	LSA0036	-	putative serine/tyrosine protein phosphatase
35	 42.12	0	35628..36572	+	314	81427652	-	LSA0037	-	putative ion Mg(2+)/Co(2+) transport protein
36	 37.47	-1	36678..37160	+	160	81427653	usp5	LSA0038	-	universal stress protein UspA family protein
37	 47.07	+1	37243..37788	+	181	81427654	tag1	LSA0039	-	3-methyl-adenine DNA glycosylase I
38	 38.38	0	37871..38365	+	164	81427655	-	LSA0040	-	hypothetical protein
39	 46.11	+1	38535..39473	+	312	81427656	panE	LSA0041	-	2-dehydropantoate 2-reductase
40	 40.38	0	39487..39954	+	155	81427657	usp1	LSA0042	-	universal stress protein UspA family protein
41	 46.64	+1	40035..40763	+	242	81427658	-	LSA0043	-	integral membrane protein
42	 41.67	0	40849..41064	+	71	81427659	-	LSA0044	-	hypothetical protein
43	 41.84	0	41152..42339	-	395	81427660	cfa	LSA0045	-	cyclopropane-fatty-acyl-phospholipid synthase
44	 40.34	0	42504..43517	+	337	81427661	-	LSA0046	-	putative transport protein
45	 43.09	0	43574..43819	-	81	81427662	-	LSA0047	-	hypothetical protein
46	 37.37	-1	43989..44186	+	65	81427663	-	LSA0048	-	hypothetical protein
47	 40.74	0	44293..45345	-	350	81427664	ddl	LSA0049	-	D-alanine--D-alanine ligase (D-alanylalanine synthetase)
48	 39.00	0	45540..45980	+	146	81427665	-	LSA0050	-	Hsp20 family heat-shock protein
49	 43.59	0	46103..46999	+	298	81427666	-	LSA0051	-	putative Na(+) ABC exporter, ATP-binding subunit
50	 41.04	0	46992..48236	+	414	81427667	-	LSA0052	-	putative Na(+) ABC exporter, membrane-spanning/permease subunit
51	 42.41	0	48377..50272	+	631	81427668	pepO	LSA0053	-	endopeptidase O
52	 45.95	+1	50525..51142	+	205	81427669	maa	LSA0054	-	maltose O-acetyltransferase (maltose transacetylase)
53	 42.50	0	51132..52298	-	388	81427670	-	LSA0055	-	putative thiamine/thiamine precursor:cation symporter
54	 44.00	0	52288..52962	-	224	81427671	thiE	LSA0057	-	thiamine-phosphate pyrophosphorylase (thiamine-phosphate synthase)
55	 48.71	+2	52955..53767	-	270	81427672	thiD	LSA0058	-	phosphomethylpyrimidine kinase (HMP-phosphate kinase)
56	 46.42	+1	53760..54569	-	269	81427673	thiM	LSA0059	-	hydroxyethylthiazole kinase
57	 43.49	0	54975..56993	+	672	81427674	nagE	LSA0060	-	N-acetylglucosamine and glucose-specific phosphotransferase system, enzyme IIABC
58	 39.37	0	57053..57997	-	314	81427675	-	LSA0061	-	extracellular protein precursor
59	 43.34	0	58097..59245	-	382	81427676	-	LSA0062	-	integral membrane protein
60	 41.61	0	59513..60793	+	426	81427677	purA	LSA0063	-	adenylosuccinate synthetase
61	 42.64	0	60964..62274	+	436	81427678	-	LSA0064	-	putative nucleobase:cation symporter
62	 43.57	0	62398..62856	+	152	81427679	-	LSA0065	-	integral membrane protein
63	 40.87	0	62931..63593	+	220	81427680	srtA1	LSA0066	-	putative surface protein transpeptidase 1 precursor (sortase 1)
64	 38.76	0	63798..64829	+	343	81427681	-	LSA0067	-	putrescine carbamoyltransferase
65	 41.79	0	64869..65849	+	326	81427682	-	LSA0068	-	putative amino acid/polyamine antiporter (N-terminal fragment), authentic frameshift
66	 39.39	0	65735..66229	+	164	81427683	-	LSA0069	-	putative amino acid/polyamine antiporter (C-terminal fragment), authentic frameshift
67	 42.11	0	66216..67343	+	375	81427684	-	LSA0070	-	agmatine deiminase
68	 43.59	0	67359..68294	+	311	81427685	-	LSA0071	-	carbamate kinase
69	 42.84	0	68379..69482	+	367	81427686	-	LSA0072	-	putative peptidylarginine deiminase (amidinotransferase)
70	 33.47	-2	69522..70268	+	248	81427687	-	LSA0073	-	RpiR family transcriptional regulator
71	 37.72	-1	70360..70929	-	189	81427688	-	LSA0074	-	XRE family DNA-binding protein
72	 41.62	0	71444..71998	+	184	81427689	-	LSA0076	-	putative DNA invertase (Plasmidic resolvase)
73	 38.94	0	72438..73151	+	237	81427690	-	LSA0077	-	two-component system, response regulator
74	 41.60	0	73161..75059	+	632	81427691	-	LSA0078	-	two-component system, sensor histidine kinase
75	 38.59	0	75049..76380	+	443	81427692	-	LSA0079	-	hypothetical protein
76	 38.93	0	76385..77206	+	273	81427693	-	LSA0080	-	hypothetical protein
77	 45.11	+1	77241..78047	+	268	81427694	-	LSA0081	-	beta-lactamase family hydrolase
78	 41.58	0	78181..79404	+	407	81427695	htrA	LSA0082	-	serine protease HtrA
79	 37.50	-1	79596..79643	+	15	81427696	-	LSA0083	-	hypothetical protein
80	 42.08	0	79985..80464	+	159	81427697	-	LSA0084	-	SPOUT methyltransferase superfamily protein
81	 48.46	+2	80604..81251	+	215	81427698	-	LSA0085	-	lipoprotein precursor
82	 43.53	0	81314..82333	-	339	81427699	add	LSA0086	-	adenosine deaminase
83	 43.82	0	82503..83846	+	447	81427700	-	LSA0087	-	putative adenine/adenosine:cation symporter
84	 45.21	+1	83856..85640	+	594	81427701	adeC1	LSA0088	-	adenine deaminase
85	 42.39	0	86081..87007	-	308	81427702	-	LSA0089	-	putative drug transport protein
86	 41.28	0	87186..88481	+	431	81427703	-	LSA0090	-	putative extracellular arylsulfate sulfotransferase (N-terminal fragment), authentic frameshift
87	 38.48	0	88481..88849	+	122	81427704	-	LSA0091	-	putative extracellular arylsulfate sulfotransferase (C-terminal fragment), authentic frameshift
88	 46.41	+1	88883..89425	+	180	81427705	-	LSA0092	-	hypothetical protein
89	 41.58	0	89509..90345	+	278	81427706	-	LSA0093	-	integral membrane protein
90	 47.47	+1	90563..91786	-	407	81427707	-	LSA0094	-	MFS family transporter
91	 45.53	+1	91981..93513	+	510	81427708	-	LSA0095	-	putative transport protein
92	 42.32	0	93789..94400	-	203	81427709	sipA1	LSA0096	-	Signal peptidase I (leader peptidase I)
93	 45.83	+1	94485..94628	-	47	81427710	-	LSA0097	-	extracellular small peptide precursor
94	 39.23	0	94813..96066	+	417	81427711	-	LSA0098	-	hypothetical protein
95	 42.40	0	96063..96779	+	238	81427712	racD	LSA0099	-	aspartate racemase
96	 47.46	+1	96789..97496	+	235	81427713	gpm1	LSA0100	-	phosphoglycerate mutase
97	 39.93	0	97477..98628	+	383	81427714	-	LSA0101	-	putative penicillin-binding protein precursor (Beta-lactamase class C)
98	 41.37	0	98673..99269	-	198	81427715	-	LSA0102	-	integral membrane protein
99	 40.17	0	99295..99777	-	160	81427716	-	LSA0103	-	MarR family transcriptional regulator
100	 41.21	0	99949..100443	-	164	81427717	tpx	LSA0104	-	Thiol peroxidase (hydroperoxide reductase, peroxiredoxin)
41.46	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.