IslandPath Analysis: Yersinia pestis KIM



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.98   STD DEV: 5.00
Yersinia pestis KIM, complete genome - 1..4600755
4086 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	21..461	-	146	22123923	mioC	y0001	-	flavodoxin
2	 41.56	-1	554..1015	-	153	22123924	asnC	y0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1185..2177	+	330	22123925	asnA	y0003	-	asparagine synthetase AsnA
4	 47.72	0	2276..3742	-	488	22123926	yieM	y0004	-	hypothetical protein
5	 46.65	0	3746..5299	-	517	22123927	-	y0005	-	regulatory ATPase RavA
6	 45.80	0	5573..7441	+	622	22123928	trkD	y0006	-	potassium transport protein Kup
7	 48.10	0	7646..8065	+	139	22123929	rbsD	y0007	-	D-ribose pyranase
8	 50.05	0	8116..9042	+	308	22123930	rbsK	y0008	-	ribokinase
9	 51.47	0	9062..9265	+	67	22123931	-	y0009	-	hypothetical protein
10	 46.46	0	9262..10686	-	474	22123932	-	y0010	-	major facilitator permease
11	 44.06	0	10766..11455	-	229	22123933	-	y0011	-	hypothetical protein
12	 44.52	0	18140..19069	+	309	22123935	metA	y0013	-	homoserine O-succinyltransferase
13	 26.00	-2	19262..19411	-	49	22123936	-	y0014	-	hypothetical protein
14	 47.98	0	19456..21087	+	543	22123937	aceB	y0015	-	malate synthase
15	 51.30	0	21134..22441	+	435	22123938	aceA	y0016	-	isocitrate lyase
16	 46.41	0	22514..24241	+	575	22123939	aceK	y0018	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
17	 51.45	0	24077..24214	-	45	22123940	-	y0017	-	hypothetical protein
18	 53.70	+1	24361..24954	-	197	22123941	iclR	y0019	-	acetate operon repressor
19	 51.92	0	25420..29115	+	1231	22123942	metH	y0020	-	B12-dependent methionine synthase
20	 44.49	0	29211..34175	-	1654	22123943	hylA	y0021	-	hemolysin precursor
21	 52.74	0	36445..37830	-	461	22123944	lysC	y0023	-	aspartate kinase III
22	 48.69	0	38200..39846	+	548	22123945	pgi	y0024	-	glucose-6-phosphate isomerase
23	 38.97	-1	39981..40388	+	135	22123946	psiE	y0025	-	phosphate-starvation-inducible protein PsiE
24	 52.63	0	40531..41442	-	303	22123947	malG	y0026	-	maltose transporter permease
25	 48.27	0	41435..43027	-	530	22123948	malF	y0027	-	maltose transporter membrane protein
26	 48.60	0	43199..44410	-	403	22123949	malE	y0028	-	maltose ABC transporter periplasmic protein
27	 53.44	+1	44888..45250	+	120	22123950	-	y0030	-	hypothetical protein
28	 53.59	+1	44998..45234	+	78	22123951	-	y0029	-	hypothetical protein
29	 53.51	+1	45238..46347	+	369	22123952	malK	y0031	-	maltose/maltodextrin transporter ATP-binding protein
30	 48.66	0	46418..47689	+	423	161484925	lamB	y0032	-	maltoporin
31	 51.29	0	47912..48841	+	309	22123954	malM	y0033	-	maltose regulon periplasmic protein
32	 32.08	-2	49078..49236	-	52	22123955	-	y0034	-	hypothetical protein
33	 31.34	-2	49240..49590	+	116	22123956	-	y0035	-	hypothetical protein
34	 48.94	0	49742..50260	-	172	22123957	-	y0036	-	hypothetical protein
35	 43.91	0	50781..51281	+	166	22123958	-	y0037	-	hypothetical protein
36	 49.60	0	51349..52830	+	493	22123959	-	y0038	-	hypothetical protein
37	 47.62	0	52837..53277	+	146	22123960	-	y0039	-	hypothetical protein
38	 48.00	0	53277..54503	+	408	22123961	-	y0040	-	hypothetical protein
39	 41.86	-1	54393..54650	-	85	22123962	-	y0041	-	transposase
40	 50.45	0	54689..55471	-	260	22123963	-	y0042	-	transposase/IS protein
41	 52.79	0	55468..56490	-	340	22123964	-	y0043	-	transposase
42	 46.01	0	56560..56985	+	141	22123965	-	y0044	-	transposase
43	 42.92	-1	57193..57432	-	79	22123966	-	y0045	-	hypothetical protein
44	 50.88	0	58060..58908	+	282	22123967	glpF	y0046	-	glycerol uptake facilitator protein
45	 52.03	0	59085..60608	+	507	22123968	glpK	y0047	-	glycerol kinase
46	 52.42	0	60845..61855	+	336	161484924	glpX	y0048	-	fructose 1,6-bisphosphatase II
47	 52.07	0	62010..62756	+	248	22123970	fpr	y0049	-	ferredoxin-NADP reductase
48	 50.50	0	63097..63597	-	166	22123971	-	y0050	-	hypothetical protein
49	 45.37	0	63700..64314	+	204	22123972	-	y0051	-	hypothetical protein
50	 48.96	0	64443..65210	+	255	22123973	tpiA	y0052	-	triosephosphate isomerase
51	 49.23	0	65442..66737	-	431	22123974	-	y0053	-	transcriptional regulator
52	 49.88	0	66730..67551	+	273	22123975	-	y0054	-	hypothetical protein
53	 54.06	+1	67548..68261	+	237	22123976	-	y0055	-	hypothetical protein
54	 44.61	0	68327..69754	+	475	22123977	-	y0056	-	membrane pump protein
55	 48.23	0	69830..70648	+	272	22123978	modA	y0057	-	hypothetical protein
56	 45.55	0	70898..71920	-	340	22123979	sbp	y0058	-	sulfate transporter subunit
57	 47.15	0	72108..73091	-	327	22123980	pfkA	y0059	-	6-phosphofructokinase
58	 48.50	0	73309..74211	-	300	22123981	fieF	y0060	-	ferrous iron efflux protein F
59	 41.46	-1	74583..74705	+	40	22123982	-	y0061	-	transposase
60	 51.04	0	74773..75732	-	319	22123983	-	y0062	-	hypothetical protein
61	 46.33	0	75777..75953	-	58	22123984	-	y0063	-	hypothetical protein
62	 43.52	0	75932..76039	+	35	22123985	-	y0064	-	hypothetical protein
63	 46.08	0	76049..76252	+	67	22123986	-	y0065	-	hypothetical protein
64	 46.63	0	76410..76898	-	162	22123987	cpxP	y0066	-	periplasmic stress adaptor protein CpxP
65	 49.79	0	77048..77770	+	240	22123988	cpxR	y0067	-	DNA-binding transcriptional regulator CpxR
66	 49.89	0	77767..79143	+	458	22123989	cpxA	y0069	-	two-component sensor protein
67	 54.25	+1	78938..79090	-	50	22123990	-	y0068	-	hypothetical protein
68	 52.02	0	79192..80256	-	354	22123991	ada	y0070	-	O6-methylguanine-DNA methyltransferase; transcription activator/repressor
69	 48.89	0	80349..80933	+	194	22123992	-	y0071	-	hypothetical protein
70	 49.76	0	81056..81877	-	273	161484923	cysE	y0072	-	serine acetyltransferase
71	 51.57	0	82143..83162	-	339	22123994	gpsA	y0073	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
72	 48.43	0	83162..83638	-	158	22123995	secB	y0074	-	preprotein translocase subunit SecB
73	 51.41	0	83726..83974	-	82	22123996	grxC	y0075	-	glutaredoxin 3
74	 45.06	0	84093..84527	-	144	22123997	-	y0076	-	hypothetical protein
75	 50.13	0	84924..86471	+	515	22123998	-	y0077	-	phosphoglyceromutase
76	 49.96	0	86481..87851	+	456	22123999	-	y0078	-	hypothetical protein
77	 48.15	0	88947..89972	-	341	22124000	tdh	y0080	-	L-threonine 3-dehydrogenase
78	 50.17	0	89982..91193	-	403	161484922	kbl	y0081	-	2-amino-3-ketobutyrate coenzyme A ligase
79	 45.12	0	91439..92371	+	310	161484921	rfaD	y0083	-	ADP-L-glycero-D-mannoheptose-6-epimerase
80	 47.81	0	92016..92243	+	75	22124003	-	y0082	-	hypothetical protein
81	 51.74	0	92402..93466	+	354	161484920	rfaF	y0084	-	ADP-heptose:LPS heptosyltransferase II
82	 50.71	0	93442..94431	+	329	22124005	rfaC	y0085	-	ADP-heptose:LPS heptosyl transferase I
83	 49.71	0	94743..96128	+	461	22124006	kdtA	y0086	-	3-deoxy-D-manno-octulosonic-acid transferase
84	 46.62	0	96129..96911	+	260	22124007	-	y0087	-	lipopolysaccharide core biosynthesis glycosyl transferase
85	 46.25	0	96908..97387	+	159	22124008	coaD	y0088	-	phosphopantetheine adenylyltransferase
86	 48.89	0	97393..98202	-	269	22124009	mutM	y0090	-	formamidopyrimidine-DNA glycosylase
87	 54.72	+1	97396..97554	+	52	22124010	-	y0089	-	hypothetical protein
88	 39.29	-1	98285..98452	-	55	22124011	rpmG	y0091	-	50S ribosomal protein L33
89	 45.44	0	98963..99631	-	222	22124012	radC	y0092	-	DNA repair protein RadC
90	 48.15	0	99828..101042	+	404	161484919	dfp	y0093	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
91	 49.04	0	101008..101478	+	156	22124014	dut	y0094	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
92	 47.91	0	101600..102196	+	198	22124015	slmA	y0095	-	nucleoid occlusion protein
93	 50.77	0	102331..102978	-	215	22124016	pyrE	y0096	-	orotate phosphoribosyltransferase
94	 51.32	0	103145..103861	-	238	22124017	rph	y0097	-	ribonuclease PH
95	 48.50	0	103988..104851	+	287	22124018	-	y0098	-	hypothetical protein
96	 47.28	0	105254..105877	+	207	22124019	-	y0099	-	hypothetical protein
97	 48.12	0	105890..107593	-	567	22124020	ligB	y0100	-	NAD-dependent DNA ligase LigB
98	 46.47	0	107994..108617	+	207	22124021	gmk	y0101	-	guanylate kinase
99	 51.45	0	108672..108947	+	91	22124022	rpoZ	y0102	-	DNA-directed RNA polymerase subunit omega
100	 48.93	0	108967..111075	+	702	22124023	spoT	y0103	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
47.98	MEAN

5.00	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.