IslandPath Analysis: Dictyoglomus thermophilum H-6-12



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.57   STD DEV: 3.14
Dictyoglomus thermophilum H-6-12, complete genome - 1..1959987
1912 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.92	+1	48..521	+	157	206901546	purE_1	DICTH_0001	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
2	 32.06	0	514..1530	+	338	206900410	purC	DICTH_0002	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3	 36.27	0	2148..2795	+	215	206901477	-	DICTH_0003	-	MgtC family protein
4	 32.66	0	2813..3550	+	245	206900496	-	DICTH_0004	-	metallo-beta-lactamase superfamily protein
5	 37.56	+1	3718..5610	+	630	206901245	-	DICTH_0005	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
6	 31.34	0	5721..6473	+	250	206901890	-	DICTH_0006	-	hypothetical protein
7	 32.79	0	6487..7224	+	245	206900995	-	DICTH_0007	-	tetratricopeptide repeat domain protein
8	 36.11	0	7229..8236	+	335	206900359	-	DICTH_0008	-	endoglucanase H
9	 34.33	0	8288..9697	-	469	206901726	-	DICTH_0009	-	mannan endo-1,4-beta-mannosidase
10	 33.84	0	9775..10167	-	130	206900955	-	DICTH_0010	-	transcriptional regulator, MerR family
11	 35.09	0	10145..10657	-	170	206901591	-	DICTH_0011	-	flavodoxin
12	 31.51	0	10796..11671	+	291	206900772	-	DICTH_0012	-	cobalt/zinc/cadmium cation efflux pump protein
13	 34.58	0	11661..13430	+	589	206900394	-	DICTH_0013	-	radical SAM
14	 35.97	0	13446..13862	+	138	206901084	-	DICTH_0014	-	hypothetical protein
15	 28.69	-1	14023..14388	-	121	206900461	-	DICTH_0015	-	hypothetical protein
16	 33.92	0	14682..15698	-	338	206901297	-	DICTH_0016	-	transcriptional regulator
17	 36.41	0	15922..17709	+	595	206900737	-	DICTH_0017	-	ABC-type dipeptide/oligopeptide/nickel transport system, periplasmic component
18	 34.55	0	17742..18728	+	328	206900417	-	DICTH_0018	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
19	 31.93	0	18725..19579	+	284	206901482	-	DICTH_0019	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
20	 33.23	0	19579..20541	+	320	206900936	-	DICTH_0020	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
21	 33.92	0	20554..21570	+	338	206901550	-	DICTH_0021	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
22	 37.60	+1	21923..23845	+	640	206900928	-	DICTH_0022	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
23	 27.86	-1	23962..24162	+	66	206901798	-	DICTH_0023	-	hypothetical protein
24	 33.56	0	24164..25060	+	298	206901432	-	DICTH_0024	-	ABC transporter, ATP-binding protein
25	 28.79	-1	25057..25827	+	256	206900120	-	DICTH_0025	-	hypothetical protein
26	 34.02	0	25828..26997	+	389	206901690	-	DICTH_0026	-	putative glycosyltransferase
27	 38.58	+1	27315..28286	+	323	206900375	-	DICTH_0027	-	tricarboxylate-binding protein
28	 30.02	-1	28350..28802	+	150	206900640	-	DICTH_0028	-	hypothetical protein
29	 36.25	0	28825..30300	+	491	206901758	-	DICTH_0029	-	tricarboxylate transport membrane protein RctA
30	 35.42	0	30317..31420	+	367	206900601	-	DICTH_0030	-	hypothetical protein
31	 37.06	+1	31433..32614	+	393	206900561	-	DICTH_0031	-	oxidoreductase family, NAD-binding Rossmann fold protein
32	 35.38	0	32674..33651	+	325	206900941	-	DICTH_0032	-	trap dicarboxylate transporter, dctp subunit, putative
33	 27.45	-1	33815..33967	+	50	206901766	-	DICTH_0033	-	hypothetical protein
34	 38.75	+1	34162..35730	+	522	206902006	-	DICTH_0034	-	glutamate synthase domain protein
35	 32.85	0	35786..36619	-	277	206900134	-	DICTH_0035	-	hypothetical protein
36	 30.93	0	36742..37950	+	402	206901691	-	DICTH_0036	-	hypothetical protein
37	 30.86	0	37947..38876	+	309	206900819	-	DICTH_0037	-	putative K+-dependent Na+/Ca+ exchanger
38	 36.45	0	38921..40621	-	566	206900899	-	DICTH_0038	-	polysaccharide ABC transporter substrate-binding protein
39	 34.46	0	40719..41609	-	296	206901748	-	DICTH_0039	-	transmembrane lipoprotein
40	 33.22	0	41620..42534	-	304	206900620	-	DICTH_0040	-	transmembrane lipoprotein
41	 29.13	-1	42685..44421	+	578	206900482	-	DICTH_0041	-	histidine kinase
42	 29.91	-1	44411..45901	+	496	206900096	-	DICTH_0042	-	two-component response regulator
43	 36.60	0	50412..51818	-	468	206901912	-	DICTH_0043	-	tissue alpha-L-fucosidase
44	 31.33	0	52007..52405	+	132	206901125	-	DICTH_0044	-	CrcB protein
45	 32.23	0	52402..52764	+	120	206900292	-	DICTH_0045	-	camphor resistance CrcB protein
46	 35.44	0	52842..55169	-	775	206901358	-	DICTH_0046	-	alpha-xylosidase
47	 34.41	0	55182..57965	-	927	206901468	-	DICTH_0047	-	glucan 1,4-beta-glucosidase
48	 32.03	0	58156..59079	+	307	206900413	-	DICTH_0049	-	hypothetical protein
49	 29.61	-1	59057..59809	-	250	206901480	-	DICTH_0048	-	para-aminobenzoate synthase component II
50	 29.81	-1	59815..61149	-	444	206901275	-	DICTH_0050	-	anthranilate synthase component I
51	 30.50	0	61146..61709	-	187	206901947	-	DICTH_0051	-	para-aminobenzoate synthase glutamine amidotransferase component II
52	 31.95	0	61828..62334	+	168	206901537	-	DICTH_0052	-	hypothetical protein
53	 29.57	-1	62397..63512	-	371	206901423	-	DICTH_0053	-	hypothetical protein
54	 39.45	+1	63516..64022	-	168	206901783	-	DICTH_0054	-	flavodoxin
55	 34.42	0	64288..65571	+	427	206900689	-	DICTH_0055	-	bacterial extracellular solute-binding protein, putative
56	 32.08	0	65674..66549	+	291	206901085	-	DICTH_0056	-	multiple sugar-binding transport system permease
57	 30.11	-1	66549..67385	+	278	206900954	-	DICTH_0057	-	multiple sugar-binding transport system permease
58	 32.17	0	67431..68888	+	485	206901362	-	DICTH_0058	-	raffinose invertase
59	 33.23	0	68909..69895	-	328	206900254	-	DICTH_0059	-	transcriptional regulator
60	 29.40	-1	70388..71023	+	211	206901087	-	DICTH_0060	-	transcriptional regulator, AcrR family
61	 29.17	-1	73360..73623	-	87	206901183	cas2_1	DICTH_0061	-	CRISPR-associated protein Cas2
62	 31.09	0	73626..74606	-	326	206900365	cas1_1	DICTH_0062	-	CRISPR-associated protein Cas1, HMARI/TNEAP subtype
63	 29.43	-1	74611..75123	-	170	206901975	cas4_1	DICTH_0063	-	CRISPR-associated protein Cas4
64	 30.20	-1	75144..77411	-	755	206901121	cas3_1	DICTH_0064	-	CRISPR-associated helicase Cas3
65	 31.20	0	77389..78090	-	233	206901693	cas5t	DICTH_0065	-	CRISPR-associated protein Cas5, Tneap subtype
66	 29.89	-1	78077..78976	-	299	206900844	cst2	DICTH_0066	-	CRISPR-associated regulatory protein, DevR family
67	 27.43	-1	78992..80668	-	558	206901511	cst1	DICTH_0067	-	CRISPR-associated CXXC_CXXC protein Cst1
68	 31.84	0	80670..81473	-	267	206901703	cas6_1	DICTH_0068	-	CRISPR-associated protein Cas6
69	 37.45	+1	81674..82864	+	396	206901145	-	DICTH_0069	-	alcohol dehydrogenase II
70	 34.39	0	82944..83984	+	346	206900528	-	DICTH_0070	-	hypothetical protein
71	 34.17	0	83974..84573	+	199	206901707	-	DICTH_0071	-	hypothetical membrane protein
72	 29.49	-1	84586..85887	+	433	206900389	-	DICTH_0072	-	deoxyribodipyrimidine photolyase
73	 33.33	0	85902..86951	+	349	206901171	-	DICTH_0073	-	hypothetical protein
74	 35.10	0	86941..87564	+	207	206900099	-	DICTH_0074	-	hypothetical membrane protein
75	 37.67	+1	87619..88056	-	145	206901225	-	DICTH_0075	-	hypothetical protein
76	 34.32	0	88204..89922	+	572	206900137	-	DICTH_0076	-	prokaryotic N-terminal methylation motif domain protein
77	 34.76	0	89975..91162	+	395	206901995	-	DICTH_0078	-	methyltransferase
78	 31.55	0	91157..92332	-	391	206900662	-	DICTH_0077	-	fusion HD-GYP domain and HD-hydrolase domain
79	 31.98	0	92440..93987	-	515	206900409	-	DICTH_0079	-	RNA-metabolising metallo-beta-lactamase family
80	 40.12	+2	94049..94549	+	166	206901727	-	DICTH_0080	-	nitroreductase
81	 34.07	0	94534..95214	+	226	206900407	-	DICTH_0081	-	ribosomal large subunit pseudouridine synthase C
82	 31.79	0	95241..95693	+	150	206901621	-	DICTH_0082	-	hypothetical protein
83	 30.45	0	95718..96098	+	126	206900761	-	DICTH_0083	-	lipoprotein, putative
84	 36.08	0	98169..98459	+	96	206900343	-	DICTH_0086	-	PTS system, mannitol/fructose-specific enzyme II, B component
85	 36.18	0	98491..99756	+	421	206901636	-	DICTH_0087	-	integral membrane protein
86	 35.19	0	99823..100092	+	89	206900145	-	DICTH_0088	-	PTS system phosphocarrier protein Hpr
87	 31.73	0	100097..101719	+	540	206901188	ptsI	DICTH_0089	-	phosphoenolpyruvate-protein phosphotransferase
88	 30.95	0	101839..102426	+	195	206900935	-	DICTH_0090	-	transcriptional regulator, TetR family
89	 32.46	0	102445..104496	+	683	206900157	-	DICTH_0091	-	hypothetical protein
90	 31.11	0	104496..105845	+	449	206901206	-	DICTH_0092	-	hypothetical protein
91	 31.37	0	105848..106306	-	152	206900546	-	DICTH_0093	-	small multidrug export protein
92	 32.98	0	106324..107460	-	378	206901659	-	DICTH_0094	-	acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase subfamily, putative
93	 35.58	0	107559..109382	+	607	206900577	-	DICTH_0095	-	hypothetical protein
94	 38.17	+1	109416..111794	+	792	206901937	xfp	DICTH_0096	-	D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
95	 31.56	0	111969..113435	+	488	206900922	-	DICTH_0097	-	clostripain family
96	 31.86	0	113491..114102	+	203	206900129	-	DICTH_0098	-	hypothetical protein
97	 34.97	0	114221..114403	+	60	206901366	-	DICTH_0099	-	hypothetical protein
98	 29.26	-1	114474..115259	+	261	206900518	-	DICTH_0100	-	hypothetical protein
99	 32.96	0	115267..115536	+	89	206900132	-	DICTH_0101	-	hypothetical protein
100	 31.20	0	115520..116035	+	171	206901919	-	DICTH_0102	-	hypothetical protein
33.57	MEAN

3.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.