IslandPath Analysis: Alteromonas macleodii 'Deep ecotype'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.90   STD DEV: 3.40
Alteromonas macleodii 'Deep ecotype', complete genome - 1..4412282
4072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.30	-1	552..689	-	45	196154826	-	MADE_00001	-	hypothetical protein
2	 43.76	0	759..2360	+	533	196154827	-	MADE_00002	-	Chromosomal replication initiator protein dnaA
3	 40.96	-1	2393..3493	+	366	196154828	-	MADE_00003	-	DNA polymerase III, beta subunit
4	 35.96	-2	3509..3622	+	37	196154829	-	MADE_00004	-	hypothetical protein
5	 39.63	-1	3691..4707	+	338	196154830	-	MADE_00005	-	Recombinational DNA repair ATPase
6	 44.94	0	4716..7136	+	806	196154831	-	MADE_00006	-	DNA gyrase subunit B
7	 43.52	0	7346..7816	-	156	196154832	-	MADE_00007	-	hypothetical protein
8	 45.89	0	7872..9950	-	692	196154833	-	MADE_00008	-	hypothetical protein
9	 46.36	0	9953..10858	-	301	196154834	-	MADE_00009	-	glycyl-tRNA synthetase beta subunit
10	 43.35	0	11004..11612	+	202	196154835	-	MADE_00010	-	constitutive 3-methyl-adenine DNA glycosylase I
11	 45.94	0	11699..12166	-	155	196154836	-	MADE_00011	-	hypothetical protein
12	 45.63	0	12185..12688	-	167	196154837	-	MADE_00012	-	hypothetical protein
13	 43.16	0	12816..13517	-	233	196154838	-	MADE_00013	-	methyltransferase-related protein
14	 45.67	0	13812..14435	-	207	196154839	-	MADE_00014	-	cytochrome c4 cytochrome C, class I in atlantica
15	 44.44	0	14610..15248	+	212	196154840	-	MADE_00015	-	GTP-binding protein
16	 44.86	0	15632..18424	-	930	196154841	-	MADE_00016	-	DNA polymerase I
17	 46.33	0	18846..19499	+	217	196154842	-	MADE_00017	-	enhancing lycopene biosynthesis protein 2
18	 47.80	0	19688..21139	+	483	196154843	-	MADE_00018	-	Trk system potassium uptake protein TrkH
19	 48.04	0	21285..22664	-	459	196154844	-	MADE_00019	-	Trk system; major constitutive K+ transport system; potassium transport inner membrane protein subunit; six
20	 47.58	0	22730..24049	-	439	196154845	-	MADE_00020	-	16S rRNA m(5)C 967 methyltransferase
21	 46.86	0	24052..24990	-	312	196154846	-	MADE_00021	-	methionyl-tRNA formyltransferase
22	 44.51	0	25011..25520	-	169	196154847	-	MADE_00022	-	N-terminal methionine peptide deformylase
23	 43.84	0	25707..26810	+	367	196154848	-	MADE_00023	-	Peptidoglycan-binding LysM
24	 46.13	0	26850..27959	+	369	196154849	-	MADE_00024	-	DNA protecting protein DprA
25	 40.67	-1	27961..28437	+	158	196154850	-	MADE_00025	-	smg protein
26	 44.20	0	28532..29074	+	180	196154851	-	MADE_00026	-	putative DNA topoisomerase; C4 zinc finger domain protein
27	 46.86	0	29097..29702	+	201	196154852	-	MADE_00027	-	putative double-stranded RNA-binding protein with unique protein fold, with YrdC/RibB domain
28	 47.80	0	29699..30631	+	310	196154853	-	MADE_00028	-	coproporphyrinogen III oxidase
29	 44.44	0	30867..31541	+	224	196154854	-	MADE_00029	-	outer membrane protein OmpW
30	 44.68	0	31657..32088	-	143	196154855	-	MADE_00030	-	putative hemoglobin-like oxygen-binding protein
31	 44.17	0	32087..32926	+	279	196154856	-	MADE_00031	-	shikimate 5-dehydrogenase
32	 41.44	-1	32923..33465	-	180	196154857	-	MADE_00032	-	putative carbonic anhydrase/acetyltransferase
33	 37.35	-2	33757..34653	+	298	196154858	-	MADE_00033	-	CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
34	 35.04	-2	36845..36961	-	38	196154859	-	MADE_00034	-	hypothetical protein
35	 42.18	0	40595..41125	-	176	196154860	-	MADE_00035	-	conserved protein of unknown function ; putative secreted protein
36	 39.87	-1	41262..42041	-	259	196154861	-	MADE_00036	-	hypothetical protein
37	 37.63	-2	42073..42864	-	263	196154862	-	MADE_00037	-	hypothetical protein
38	 44.71	0	43004..45964	-	986	196154863	-	MADE_00038	-	putative DNA polymerase III alpha chain
39	 44.47	0	46122..47576	-	484	196154864	-	MADE_00039	-	Nucleotidyltransferase/DNA polymerase involved in DNA repair
40	 46.52	0	47579..48283	-	234	196154865	-	MADE_00040	-	RecA/RadA recombinase
41	 34.15	-2	48282..48404	+	40	196154866	-	MADE_00041	-	hypothetical protein
42	 43.66	0	48533..49045	-	170	196154867	-	MADE_00042	-	hypothetical protein
43	 44.06	0	49048..50799	-	583	196154868	-	MADE_00043	-	hypothetical protein
44	 37.50	-2	50839..51174	-	111	196154869	-	MADE_00044	-	hypothetical protein
45	 46.70	0	51363..53000	+	545	196154870	-	MADE_00045	-	probable aminopeptidase
46	 39.58	-1	53290..54057	+	255	196154871	-	MADE_00046	-	putative lipopolysaccharide biosynthesis glycosyltransferase
47	 43.71	0	54169..54756	-	195	196154872	-	MADE_00047	-	nucleoid occlusion protein
48	 47.88	0	54878..56101	-	407	196154873	-	MADE_00048	-	DNA/pantothenate metabolism flavoprotein
49	 42.48	0	56307..56984	+	225	196154874	-	MADE_00049	-	DNA repair protein RadC
50	 48.33	+1	57077..57436	+	119	196154875	-	MADE_00050	-	hypothetycal protein
51	 43.91	0	57530..58219	+	229	196154876	-	MADE_00051	-	putative lipoprotein
52	 45.05	0	58219..58764	+	181	196154877	-	MADE_00052	-	hypothetical protein
53	 42.08	0	58788..58970	+	60	196154878	-	MADE_00053	-	WbfC protein Wbf genes involved in EPS (not LPS)
54	 46.65	0	58967..61069	+	700	196154879	-	MADE_00054	-	Fusion of WbfC- and WbfB-like uncharacterized
55	 43.46	0	61397..61633	+	78	196154880	-	MADE_00055	-	ribosomal protein L28
56	 38.46	-1	61645..61800	+	51	196154881	-	MADE_00056	-	50S ribosomal subunit protein L33
57	 44.30	0	62066..62530	+	154	196154882	-	MADE_00057	-	hypothetical protein
58	 49.51	+1	62531..63340	+	269	196154883	-	MADE_00058	-	formamidopyrimidine-DNA glycosylase
59	 44.17	0	63367..63855	-	162	196154884	-	MADE_00059	-	phosphopantetheine adenylyltransferase
60	 46.05	0	63961..64605	-	214	196154885	-	MADE_00060	-	3-deoxy-D-manno-octulosonic-acid kinase
61	 35.04	-2	64664..64780	+	38	196154886	-	MADE_00061	-	hypothetical protein
62	 49.05	+1	64780..65784	+	334	196154887	-	MADE_00062	-	putative ADP-heptose:LPS heptosyltransferase
63	 44.51	0	65874..66347	+	157	196154888	-	MADE_00063	-	hypothetical protein
64	 46.94	0	66344..67519	+	391	196154889	-	MADE_00064	-	hypothetical protein
65	 43.44	0	67529..69973	+	814	196154890	-	MADE_00065	-	GGDEF/EAL domain protein
66	 48.37	+1	70132..71328	+	398	196154891	-	MADE_00066	-	2-amino-3-ketobutyrate coenzyme A ligase
67	 48.54	+1	71325..72350	+	341	196154892	-	MADE_00067	-	L-threonine 3-dehydrogenase
68	 49.68	+1	72350..72661	+	103	196154893	-	MADE_00068	-	glpE protein
69	 49.19	+1	72834..73697	+	287	196154894	-	MADE_00069	-	putative glpG protein
70	 43.48	0	73818..74231	-	137	196154895	-	MADE_00070	-	flagellar basal body-associated protein FilL
71	 44.91	0	74380..74949	+	189	196154896	-	MADE_00071	-	hypothetical chorismate pyruvate lyase
72	 47.39	0	74946..75806	+	286	196154897	-	MADE_00072	-	4-hydroxybenzoate octaprenyltransferase
73	 39.03	-1	76025..76375	+	116	196154898	-	MADE_00073	-	hypothetical protein
74	 41.18	-1	76377..76682	+	101	196154899	-	MADE_00074	-	DNA-binding protein
75	 46.83	0	76793..77044	-	83	196154900	-	MADE_00075	-	hypothetical protein
76	 48.21	0	77156..79171	+	671	196154901	-	MADE_00076	-	ATP-dependent DNA helicase Rep
77	 45.48	0	79215..81815	-	866	196154902	-	MADE_00077	-	Intracellular signaling protein (GAF,GGDEF,EAL domains)
78	 50.74	+1	81919..82326	-	135	196154903	-	MADE_00078	-	cytochrome c5
79	 41.39	-1	82701..83693	-	330	196154904	-	MADE_00079	-	Amidophosphoribosyl transferase
80	 40.89	-1	83884..84108	-	74	196154905	-	MADE_00080	-	hypothetical protein
81	 38.60	-1	84100..84213	+	37	196154906	-	MADE_00081	-	hypothetical protein
82	 47.07	0	84477..85874	+	465	196154907	-	MADE_00082	-	Na+/H+ antiporter NhaC
83	 47.86	0	85980..86399	-	139	196154908	-	MADE_00083	-	protein of unknown function DUF395, YeeE/YedE
84	 51.98	+2	86420..86848	-	142	196154909	-	MADE_00084	-	protein of unknown function DUF395, YeeE/YedE
85	 40.18	-1	86938..87390	-	150	196154910	-	MADE_00085	-	YhdE (NsrR)
86	 46.69	0	87520..88320	+	266	196154911	-	MADE_00086	-	hypothetical protein
87	 47.60	0	88331..89185	+	284	196154912	-	MADE_00087	-	metallo-beta-lactamase family protein
88	 47.73	0	89197..90870	+	557	196154913	-	MADE_00088	-	uncharacterized NAD(FAD)-dependent dehydrogenase
89	 50.76	+1	91240..91503	+	87	196154914	-	MADE_00089	-	putative outer membrane receptor protein
90	 45.62	0	91567..92046	+	159	196154915	-	MADE_00090	-	predicted membrane protein
91	 41.98	0	92123..92608	+	161	196154916	-	MADE_00091	-	hypothetical protein
92	 43.60	0	92705..94369	-	554	196154917	-	MADE_00092	-	cysteine transport (export) protein
93	 44.68	0	94377..96068	-	563	196154918	-	MADE_00093	-	MdlB protein
94	 42.81	0	96071..97072	-	333	196154919	-	MADE_00094	-	ubiquinol oxidase subunit II, cyanide insensitive
95	 45.70	0	97075..98400	-	441	196154920	-	MADE_00095	-	putative transmembrane cytochrome bd-ii oxidase (subunit i) oxidoreductase protein
96	 44.86	0	98714..99112	-	132	196154921	-	MADE_00096	-	Rhodanese-related sulfurtransferase
97	 42.01	0	99118..99981	-	287	196154922	-	MADE_00097	-	Zn-dependent hydrolase, glyoxylase family protein
98	 45.62	0	100044..100694	-	216	196154923	-	MADE_00098	-	alkyl hydroperoxide reductase
99	 43.85	0	100829..101275	+	148	196154924	-	MADE_00099	-	hypothetical protein
100	 39.57	-1	101320..102153	-	277	196154925	-	MADE_00100	-	putative thiol:disulfide interchange protein
44.90	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.