IslandPath Analysis: Staphylococcus aureus subsp. aureus MSSA476



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.94   STD DEV: 3.41
Staphylococcus aureus subsp. aureus MSSA476, complete genome - 1..2799802
2579 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.75	0	517..1878	+	453	49484913	dnaA	SAS0001	-	chromosomal replication initiation protein
2	 32.72	0	2156..3289	+	377	49484914	-	SAS0002	-	DNA polymerase III subunit beta
3	 35.37	0	3670..3915	+	81	49484915	-	SAS0003	-	hypothetical protein
4	 33.78	0	3912..5024	+	370	49484916	recF	SAS0004	-	recombination protein F
5	 36.96	+1	5037..6968	+	643	49484917	-	SAS0005	-	DNA gyrase subunit B
6	 36.90	+1	7005..9668	+	887	49484918	-	SAS0006	-	DNA gyrase subunit A
7	 37.06	+1	9755..10585	-	276	49484919	-	SAS0007	-	hypothetical protein
8	 36.77	+1	10893..12407	+	504	49484920	hutH	SAS0008	-	histidine ammonia-lyase
9	 34.42	0	12786..14072	+	428	49484921	-	SAS0009	-	seryl-tRNA synthetase
10	 37.36	+1	14724..15419	+	231	49484922	-	SAS0010	-	hypothetical protein
11	 34.55	0	15416..15745	+	109	49484923	-	SAS0011	-	hypothetical protein
12	 35.81	0	16108..17076	+	322	49484924	-	SAS0012	-	putative hydrolase
13	 32.32	0	17321..18307	+	328	49484925	-	SAS0013	-	hypothetical protein
14	 35.52	0	18322..20289	+	655	49484926	-	SAS0014	-	hypothetical protein
15	 31.77	0	20286..20732	+	148	49484927	rplI	SAS0015	-	50S ribosomal protein L9
16	 38.33	+1	20764..22164	+	466	49484928	-	SAS0016	-	replicative DNA helicase
17	 36.45	+1	22443..23726	+	427	49484929	-	SAS0017	-	adenylosuccinate synthetase
18	 36.44	+1	24924..25631	+	235	49484930	-	SAS0018	-	response regulator protein
19	 34.81	0	25644..27470	+	608	49484931	-	SAS0019	-	sensor kinase protein
20	 35.13	0	27463..28797	+	444	49484932	-	SAS0020	-	hypothetical protein
21	 32.19	0	28798..29586	+	262	49484933	-	SAS0021	-	hypothetical protein
22	 35.96	0	29975..30775	+	266	49484934	-	SAS0022	-	metallo-beta-lactamase superfamily protein
23	 38.33	+1	30961..33321	+	786	49484935	-	SAS0023	-	putative 5'-nucleotidase
24	 39.17	+1	33689..34168	+	159	49484936	-	SAS0024	-	hypothetical protein
25	 33.76	0	34546..37584	-	1012	49484937	-	SAS0025	-	putative type I restriction enzyme protein
26	 28.60	-1	37588..38898	-	436	49484938	-	SAS0026	-	putative type I restriction enzyme specificity protein
27	 36.13	0	38891..40678	-	595	49484939	-	SAS0027	-	putative type I restriction enzyme methylase protein
28	 30.63	0	40866..41087	-	73	49484940	-	SAS0028	-	hypothetical protein
29	 35.71	0	41101..41604	-	167	49484941	-	SAS0029	-	hypothetical protein
30	 30.77	0	41620..41931	-	103	49484942	-	SAS0030	-	hypothetical protein
31	 34.80	0	42024..42365	-	113	49484943	-	SAS0031	-	hypothetical protein
32	 34.01	0	42831..44456	-	541	49484944	ccrB	SAS0032	-	site-specific recombinase
33	 34.96	0	44478..45827	-	449	49484945	ccrA1	SAS0033	-	site-specific recombinase
34	 35.48	0	46015..47784	-	589	49484946	-	SAS0034	-	hypothetical protein
35	 36.70	+1	47784..48080	-	98	49484947	-	SAS0035	-	hypothetical protein
36	 24.40	-2	48253..49740	-	495	49484948	-	SAS0036	-	hypothetical protein
37	 32.06	0	49912..50616	+	234	49484949	-	SAS0037	-	hypothetical protein
38	 26.22	-1	50640..51482	+	280	49484950	-	SAS0038	-	hypothetical protein
39	 32.04	0	51926..52234	+	102	49484951	-	SAS0040	-	hypothetical protein
40	 23.94	-2	52820..53458	+	212	49484952	-	SAS0043	-	putative fusidic acid resistance protein
41	 24.92	-2	54144..54773	+	209	49484953	-	SAS0044	-	hypothetical protein
42	 31.47	0	55452..55880	-	142	49484954	-	SAS0046	-	hypothetical protein
43	 25.05	-2	55960..56889	+	309	49484955	-	SAS0047	-	hypothetical protein
44	 27.62	-1	57181..58476	+	431	49484956	-	SAS0048	-	hypothetical protein
45	 26.03	-2	60231..60956	+	241	49484957	seh	SAS0051	-	enterotoxin H
46	 28.06	-1	61852..62325	+	157	49484958	-	SAS0053	-	acetyltransferase (GNAT) family protein
47	 31.48	0	62876..63631	-	251	49484959	-	SAS0054	-	hypothetical protein
48	 31.09	0	63631..63897	-	88	49484960	-	SAS0055	-	hypothetical protein
49	 31.84	0	64028..65095	+	355	49484961	-	SAS0056	-	hypothetical protein
50	 33.56	0	65126..66460	+	444	49484962	-	SAS0057	-	metallo-beta-lactamase superfamily protein
51	 32.58	0	66479..67672	+	397	49484963	-	SAS0058	-	putative oxidoreductase
52	 38.91	+1	68339..69325	-	328	49484964	-	SAS0059	-	hypothetical protein
53	 26.47	-1	69634..69837	+	67	49484965	-	SAS0060	-	hypothetical protein
54	 31.65	0	69886..70182	+	98	49484966	-	SAS0061	-	hypothetical protein
55	 29.07	-1	70254..71474	-	406	49484967	-	SAS0062	-	hypothetical protein
56	 31.18	0	71467..72024	-	185	49484968	-	SAS0063	-	hypothetical protein
57	 27.64	-1	72131..72991	+	286	49484969	-	SAS0064	-	LysR family regulatory protein
58	 26.22	-1	73346..73879	-	177	49484970	-	SAS0065	-	hypothetical protein
59	 26.26	-1	73979..74713	+	244	49484971	-	SAS0066	-	LysR family regulatory protein
60	 30.07	0	75138..75749	+	203	49484972	-	SAS0067	-	hypothetical protein
61	 31.34	0	76016..79168	+	1050	49484973	-	SAS0068	-	hypothetical protein
62	 32.09	0	79225..79707	+	160	49484974	-	SAS0069	-	hypothetical protein
63	 29.57	0	81118..81888	+	256	49484975	-	SAS0072	-	putative lipoprotein
64	 28.02	-1	81940..82710	+	256	49484976	-	SAS0073	-	putative lipoprotein
65	 27.45	-1	82989..83753	+	254	49484977	-	SAS0074	-	putative lipoprotein
66	 33.91	0	83756..85132	+	458	49484978	-	SAS0075	-	hypothetical protein
67	 27.52	-1	85132..85458	+	108	49484979	-	SAS0076	-	hypothetical protein
68	 32.05	0	85462..85773	+	103	49484980	-	SAS0077	-	hypothetical protein
69	 33.65	0	86025..88262	+	745	49484981	-	SAS0078	-	putative regulatory protein
70	 36.98	+1	88413..89591	+	392	49484982	-	SAS0079	-	putative peptidase
71	 37.08	+1	89593..90981	+	462	49484983	-	SAS0080	-	putative transporter protein
72	 35.79	0	91468..93135	-	555	49484984	-	SAS0081	-	putative Na+/Pi-cotransporter protein
73	 35.75	0	93453..95228	-	591	49484985	-	SAS0082	-	putative myosin-crossreactive antigen
74	 29.75	0	95579..96052	+	157	49484986	-	SAS0083	-	hypothetical protein
75	 34.59	0	96314..97906	+	530	49484987	-	SAS0084	-	L-lactate permease 1
76	 38.00	+1	98235..99713	-	492	49484988	-	SAS0085	-	immunoglobulin G binding protein A precursor
77	 27.49	-1	100134..100886	-	250	49484989	-	SAS0086	-	putative regulatory protein
78	 37.14	+1	101255..102253	-	332	49484990	-	SAS0087	-	putative siderophore transport system permease
79	 38.45	+1	102250..103245	-	331	49484991	-	SAS0088	-	putative siderophore transport system permease
80	 32.23	0	103261..104253	-	330	49484992	-	SAS0089	-	lipoprotein
81	 36.80	+1	104484..105464	+	326	49484993	-	SAS0090	-	pyridoxal-phosphate dependent enzyme
82	 37.39	+1	105461..106471	+	336	49484994	-	SAS0091	-	putative ornithine cyclodeaminase
83	 35.56	0	106492..108246	+	584	49484995	-	SAS0092	-	putative siderophore biosynthesis protein
84	 39.14	+1	108239..109495	+	418	49484996	-	SAS0093	-	putative transport protein
85	 36.61	+1	109485..111221	+	578	49484997	-	SAS0094	-	putative siderophore biosynthesis protein
86	 36.09	0	111202..112980	+	592	49484998	-	SAS0095	-	putative siderophore biosynthesis protein
87	 40.15	+2	112955..113731	+	258	49484999	-	SAS0096	-	putative aldolase
88	 36.41	+1	113731..114933	+	400	49485000	-	SAS0097	-	pyridoxal-dependent decarboxylase decarboxylase
89	 37.25	+1	114937..115701	+	254	49485001	-	SAS0098	-	hypothetical protein
90	 29.41	-1	115897..116304	+	135	49485002	-	SAS0099	-	hypothetical protein
91	 31.42	0	116354..116980	+	208	49485003	-	SAS0100	-	hypothetical protein
92	 40.93	+2	117192..117968	+	258	49485004	-	SAS0101	-	acetoin reductase
93	 31.33	0	118017..118166	-	49	49485005	-	SAS0101a	-	hypothetical protein
94	 31.89	0	118313..119284	+	323	49485006	-	SAS0102	-	NAD dependent epimerase/dehydratase family protein
95	 34.78	0	119247..119939	+	230	49485007	-	SAS0103	-	putative sugar transferase
96	 33.16	0	120149..121315	+	388	49485008	-	SAS0104	-	galactosyl transferase
97	 30.02	0	121296..122534	+	412	49485009	-	SAS0105	-	hypothetical protein
98	 31.59	0	122524..123954	+	476	49485010	-	SAS0106	-	polysaccharide biosynthesis protein
99	 35.33	0	124222..124821	+	199	49485011	-	SAS0107	-	superoxide dismutase
100	 35.12	0	125189..125914	+	241	49485012	-	SAS0108	-	putative surface anchored protein
32.94	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.