IslandPath Analysis: Hydrogenobaculum sp. Y04AAS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.89   STD DEV: 3.42
Hydrogenobaculum sp. Y04AAS1, complete genome - 1..1559514
1629 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.93	0	265..1599	+	444	195952381	-	HY04AAS1_0001	-	chromosomal replication initiator protein DnaA
2	 37.69	0	1600..2403	-	267	195952382	-	HY04AAS1_0002	-	protein of unknown function DUF81
3	 34.76	0	2400..2750	-	116	195952383	-	HY04AAS1_0003	-	t-RNA-binding domain protein
4	 36.23	0	2810..4258	+	482	195952384	-	HY04AAS1_0004	-	glycogen/starch synthase, ADP-glucose type
5	 33.50	0	4258..5445	+	395	195952385	-	HY04AAS1_0005	-	dihydropteroate synthase
6	 36.81	0	5438..6184	+	248	195952386	-	HY04AAS1_0006	-	protein of unknown function DUF147
7	 34.26	0	6189..7586	-	465	195952387	-	HY04AAS1_0007	-	RND efflux system, outer membrane lipoprotein, NodT family
8	 37.27	0	7588..8679	-	363	195952388	-	HY04AAS1_0008	-	secretion protein HlyD family protein
9	 38.98	+1	8758..9465	-	235	195952389	-	HY04AAS1_0009	-	ABC transporter related
10	 37.80	0	9467..10609	-	380	195952390	-	HY04AAS1_0010	-	protein of unknown function DUF214
11	 40.33	+1	11078..11563	-	161	195952391	-	HY04AAS1_0011	-	rare lipoprotein A
12	 36.95	0	11837..12499	+	220	195952392	-	HY04AAS1_0012	-	phosphate uptake regulator, PhoU
13	 32.33	0	12459..14255	+	598	195952393	-	HY04AAS1_0013	-	integral membrane sensor signal transduction histidine kinase
14	 33.33	0	14245..15384	-	379	195952394	-	HY04AAS1_0014	-	major facilitator superfamily MFS_1
15	 38.07	0	15381..16352	-	323	195952395	-	HY04AAS1_0015	-	quinolinate synthetase complex, A subunit
16	 38.02	0	16463..17401	+	312	195952396	-	HY04AAS1_0016	-	ribose-phosphate pyrophosphokinase
17	 34.58	0	17522..18241	-	239	195952397	-	HY04AAS1_0017	-	pseudouridine synthase
18	 36.43	0	18238..18786	-	182	195952398	-	HY04AAS1_0018	-	GTP cyclohydrolase I
19	 35.46	0	18866..19663	-	265	195952399	-	HY04AAS1_0019	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
20	 36.44	0	19653..20780	-	375	195952400	-	HY04AAS1_0020	-	peptide chain release factor 2
21	 37.56	0	20782..20994	-	70	195952401	-	HY04AAS1_0021	-	copper ion binding protein
22	 32.79	0	21151..21885	-	244	195952402	-	HY04AAS1_0022	-	hypothetical protein
23	 37.92	0	22003..23157	+	384	195952403	-	HY04AAS1_0023	-	chaperone protein DnaJ
24	 34.60	0	23147..23542	+	131	195952404	-	HY04AAS1_0024	-	transcriptional regulator, MerR family
25	 38.44	+1	23571..23864	-	97	195952405	-	HY04AAS1_0025	-	Cupin 2 conserved barrel domain protein
26	 35.06	0	23857..25242	-	461	195952406	-	HY04AAS1_0026	-	UDP-N-acetylglucosamine pyrophosphorylase
27	 31.45	-1	25252..26154	-	300	195952407	-	HY04AAS1_0027	-	tRNA synthetase class II (D K and N)
28	 36.41	0	26151..26801	-	216	195952408	-	HY04AAS1_0028	-	exsB protein
29	 32.04	0	26805..28427	-	540	195952409	-	HY04AAS1_0029	-	methyl-accepting chemotaxis sensory transducer
30	 33.90	0	28417..29304	-	295	195952410	-	HY04AAS1_0030	-	Tetratricopeptide TPR_2 repeat protein
31	 39.09	+1	29387..29803	+	138	195952411	-	HY04AAS1_0031	-	hypothetical protein
32	 34.67	0	30182..31006	-	274	195952412	-	HY04AAS1_0032	-	carboxylesterase
33	 34.58	0	31008..32369	-	453	195952413	-	HY04AAS1_0033	-	aminotransferase class-III
34	 30.00	-1	32317..32946	-	209	195952414	-	HY04AAS1_0034	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
35	 39.25	+1	33006..33512	-	168	195952415	-	HY04AAS1_0035	-	Redoxin domain protein
36	 29.89	-1	33590..34489	-	299	195952416	-	HY04AAS1_0036	-	5'-3' exonuclease
37	 34.14	0	34490..34984	-	164	195952417	-	HY04AAS1_0037	-	protein of unknown function DUF151
38	 34.44	0	35103..35372	-	89	195952418	-	HY04AAS1_0038	-	hypothetical protein
39	 40.00	+1	35376..35600	-	74	195952419	-	HY04AAS1_0039	-	ferredoxin
40	 39.94	+1	35611..36291	-	226	195952420	-	HY04AAS1_0040	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
41	 40.25	+1	36303..37169	-	288	195952421	-	HY04AAS1_0041	-	thiamine pyrophosphate protein domain protein TPP-binding
42	 41.37	+1	37200..38369	-	389	195952422	-	HY04AAS1_0042	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
43	 40.06	+1	38385..39098	-	237	195952423	-	HY04AAS1_0043	-	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
44	 36.52	0	39298..40050	-	250	195952424	-	HY04AAS1_0044	-	hydrogenase accessory protein HypB
45	 32.56	0	40043..40432	-	129	195952425	-	HY04AAS1_0045	-	HupH hydrogenase expression protein
46	 33.29	0	40426..42636	-	736	195952426	-	HY04AAS1_0046	-	(NiFe) hydrogenase maturation protein HypF
47	 35.07	0	42633..42977	-	114	195952427	-	HY04AAS1_0047	-	hydrogenase nickel insertion protein HypA
48	 36.98	0	42979..43965	-	328	195952428	-	HY04AAS1_0048	-	hydrogenase expression/formation protein HypE
49	 37.17	0	43956..45050	-	364	195952429	-	HY04AAS1_0049	-	hydrogenase expression/formation protein HypD
50	 36.25	0	45028..45267	-	79	195952430	-	HY04AAS1_0050	-	hydrogenase assembly chaperone hypC/hupF
51	 38.12	0	45277..45777	-	166	195952431	-	HY04AAS1_0051	-	hydrogenase maturation protease
52	 36.78	0	45774..46469	-	231	195952432	-	HY04AAS1_0052	-	Ni/Fe-hydrogenase, b-type cytochrome subunit
53	 40.01	+1	46462..48363	-	633	195952433	-	HY04AAS1_0053	-	nickel-dependent hydrogenase large subunit
54	 43.79	+2	48367..49437	-	356	195952434	-	HY04AAS1_0054	-	hydrogenase (NiFe) small subunit HydA
55	 33.24	0	49700..51844	+	714	195952435	-	HY04AAS1_0055	-	methyl-accepting chemotaxis sensory transducer
56	 33.84	0	51854..53233	+	459	195952436	-	HY04AAS1_0056	-	hypothetical protein
57	 30.13	-1	53236..53766	-	176	195952437	-	HY04AAS1_0057	-	hypothetical protein
58	 39.23	+1	53808..54536	+	242	195952438	-	HY04AAS1_0058	-	hypothetical protein
59	 34.07	0	54665..56569	-	634	195952439	-	HY04AAS1_0059	-	protein of unknown function DUF255
60	 32.79	0	56614..57534	-	306	195952440	-	HY04AAS1_0060	-	phosphoesterase DHHA1
61	 35.23	0	57534..59111	-	525	195952441	-	HY04AAS1_0061	-	RNA binding S1 domain protein
62	 42.14	+2	59219..59377	-	52	195952442	-	HY04AAS1_0062	-	hypothetical protein
63	 33.47	0	59382..60137	-	251	195952443	-	HY04AAS1_0063	-	MazG family protein
64	 33.55	0	60800..61264	+	154	195952444	-	HY04AAS1_0064	-	hypothetical protein
65	 39.72	+1	61362..62363	+	333	195952445	-	HY04AAS1_0065	-	ketol-acid reductoisomerase
66	 35.74	0	62360..62983	+	207	195952446	-	HY04AAS1_0066	-	CDP-alcohol phosphatidyltransferase
67	 36.92	0	62976..63644	+	222	195952447	-	HY04AAS1_0067	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
68	 42.25	+2	63675..63932	+	85	195952448	-	HY04AAS1_0068	-	hypothetical protein
69	 37.26	0	63929..64717	+	262	195952449	-	HY04AAS1_0069	-	Dihydrodipicolinate reductase
70	 31.81	0	64714..65238	+	174	195952450	-	HY04AAS1_0070	-	HNH endonuclease
71	 40.10	+1	65293..65484	+	63	195952451	-	HY04AAS1_0071	-	ribosomal protein L28
72	 34.98	0	65536..66447	+	303	195952452	-	HY04AAS1_0072	-	NAD-dependent epimerase/dehydratase
73	 34.19	0	66424..67596	-	390	195952453	-	HY04AAS1_0073	-	phosphate-selective porin O and P
74	 39.02	+1	67679..67942	-	87	195952454	-	HY04AAS1_0074	-	nitrogen-fixing NifU domain protein
75	 37.18	0	67957..68580	-	207	195952455	-	HY04AAS1_0075	-	Superoxide dismutase
76	 28.91	-1	68636..69223	-	195	195952456	-	HY04AAS1_0076	-	molybdopterin-guanine dinucleotide biosynthesis protein A
77	 35.71	0	69216..70184	-	322	195952457	-	HY04AAS1_0077	-	Lytic transglycosylase catalytic
78	 36.01	0	70234..72216	-	660	195952458	-	HY04AAS1_0078	-	general secretion pathway protein D
79	 40.00	+1	72431..72835	+	134	195952459	-	HY04AAS1_0079	-	S-adenosylmethionine decarboxylase proenzyme
80	 33.93	0	72829..73830	+	333	195952460	-	HY04AAS1_0080	-	SMF family protein
81	 32.12	0	73823..74482	+	219	195952461	-	HY04AAS1_0081	-	protein of unknown function DUF558
82	 38.89	+1	74519..76174	+	551	195952462	-	HY04AAS1_0082	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
83	 30.59	-1	76181..77275	+	364	195952463	-	HY04AAS1_0083	-	hypothetical protein
84	 40.32	+1	77396..78196	+	266	195952464	-	HY04AAS1_0084	-	hypothetical protein
85	 40.48	+1	78216..79223	+	335	195952465	-	HY04AAS1_0085	-	putative sulfate-binding protein
86	 30.78	-1	79479..80222	+	247	195952466	-	HY04AAS1_0086	-	ABC transporter related
87	 32.38	0	80215..81468	+	417	195952467	-	HY04AAS1_0087	-	CBS domain containing protein
88	 30.76	-1	81425..82123	+	232	195952468	-	HY04AAS1_0088	-	hypothetical protein
89	 39.87	+1	82156..84036	+	626	195952469	-	HY04AAS1_0089	-	acetate/CoA ligase
90	 36.62	0	84037..85557	+	506	195952470	-	HY04AAS1_0090	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
91	 41.34	+1	85619..86767	+	382	195952471	-	HY04AAS1_0091	-	2-nitropropane dioxygenase NPD
92	 32.13	0	86768..87100	+	110	195952472	-	HY04AAS1_0092	-	hypothetical protein
93	 27.66	-2	87097..87378	+	93	195952473	-	HY04AAS1_0093	-	hypothetical protein
94	 29.57	-1	87375..87773	+	132	195952474	-	HY04AAS1_0094	-	hypothetical protein
95	 35.97	0	87770..88906	+	378	195952475	-	HY04AAS1_0095	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
96	 29.88	-1	89036..90628	+	530	195952476	-	HY04AAS1_0096	-	transposase, IS605 OrfB family
97	 38.06	0	90661..91845	+	394	195952477	-	HY04AAS1_0097	-	phosphoribosylglycinamide formyltransferase 2
98	 37.94	0	91855..93654	+	599	195952478	-	HY04AAS1_0098	-	GTP-binding protein LepA
99	 36.43	0	93651..94748	+	365	195952479	-	HY04AAS1_0099	-	lysine 2,3-aminomutase YodO family protein
100	 45.03	+2	94906..95247	+	113	195952480	-	HY04AAS1_0100	-	hypothetical protein
34.89	MEAN

3.42	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.