IslandPath Analysis: Candidatus Protochlamydia amoebophila UWE25



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.65   STD DEV: 3.38
Candidatus Protochlamydia amoebophila UWE25, complete genome - 1..2414465
2031 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.80	0	123..338	-	71	46445635	-	pc0001	-	hypothetical protein
2	 34.74	0	462..746	+	94	46445636	-	pc0002	-	hypothetical protein
3	 34.11	0	1055..4024	+	989	46445637	-	pc0003	-	hypothetical protein
4	 35.74	0	4428..5840	+	470	46445638	-	pc0004	-	hypothetical protein
5	 37.96	0	5907..8303	-	798	46445639	-	pc0005	-	putative phosphoketolase
6	 30.99	-1	9037..9249	-	70	46445640	-	pc0006	-	hypothetical protein
7	 34.62	0	9395..11098	-	567	46445641	-	pc0007	-	hypothetical protein
8	 33.89	0	11759..15346	+	1195	46445642	recC	pc0008	-	putative exodeoxyribonuclease V gamma chain
9	 34.22	0	15358..18858	+	1166	46445643	recB	pc0009	-	putative exodeoxyribonuclease V beta chain
10	 34.67	0	18855..20723	+	622	46445644	recD	pc0010	-	putative exodeoxyribonuclease V alpha chain recD
11	 28.72	-2	21414..21608	+	64	46445645	-	pc0011	-	hypothetical protein
12	 32.88	0	21646..23628	-	660	46445646	-	pc0012	-	hypothetical protein
13	 37.72	0	23912..25006	+	364	46445647	ssuA	pc0013	-	putative substrate-binding protein of aliphatic sulfonate ABC transporter
14	 35.98	0	24993..25784	+	263	46445648	ssuB	pc0014	-	ABC transporter ATP-binding protein
15	 38.10	0	25781..26557	+	258	46445649	ssuC	pc0015	-	putative integral membrane components of the ABC transporters
16	 34.16	0	26732..28063	-	443	46445650	glmU	pc0016	-	putative bifunctional protein UDP-N-acetylglucosamine pyrophosphorylase, glucosamine-1-phosphate N-acetyltransferase
17	 36.67	0	28522..29571	-	349	46445651	rfaF	pc0017	-	putative ADP-heptose--lipopolysaccharide heptosyltransferase II
18	 31.73	-1	29961..31583	+	540	46445652	-	pc0018	-	hypothetical protein
19	 38.07	0	31580..32086	+	168	46445653	ruvC	pc0019	-	Holliday junction resolvase
20	 36.96	0	32105..32710	+	201	46445654	ruvA	pc0020	-	Holliday junction DNA helicase
21	 37.85	0	32733..33374	-	213	46445655	nth	pc0021	-	endonuclease III (UV endonuclease)
22	 37.40	0	33359..34735	-	458	46445656	trmE	pc0022	-	tRNA modification GTPase TrmE
23	 34.31	0	34867..35784	+	305	46445657	psdD	pc0023	-	putative phosphatidylserine decarboxylase proenzyme
24	 36.02	0	35903..36460	-	185	46445658	ahpC	pc0024	-	proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA)
25	 38.23	0	36689..37321	-	210	46445659	-	pc0025	-	hypothetical protein
26	 35.78	0	37531..42066	-	1511	46445660	-	pc0026	-	hypothetical protein
27	 37.48	0	42300..43094	+	264	46445661	prmA	pc0027	-	putative ribosomal protein L11 methyltransferase
28	 31.13	-1	43555..43917	+	120	46445662	-	pc0028	-	hypothetical protein
29	 36.51	0	44228..44479	-	83	46445663	-	pc0029	-	hypothetical protein
30	 40.98	+1	44688..46361	-	557	46445664	groEl	pc0030	-	60 kDa chaperonin (GroEL)
31	 37.36	0	46386..46733	-	115	46445665	groEs	pc0031	-	chaperonin groES
32	 35.03	0	46824..48059	-	411	46445666	-	pc0032	-	hypothetical protein
33	 36.95	0	48362..52009	+	1215	46445667	putA	pc0033	-	putative bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase)
34	 36.00	0	51894..54179	+	761	46445668	mutD	pc0034	-	ATP-dependent DNA helicase
35	 38.00	0	54446..54745	+	99	46445669	-	pc0035	-	hypothetical protein
36	 37.11	0	54770..55351	-	193	46445670	-	pc0036	-	hypothetical protein
37	 33.97	0	56119..57060	+	313	46445671	-	pc0037	-	putative metalloprotease
38	 32.22	-1	57233..60094	-	953	46445672	-	pc0038	-	hypothetical protein
39	 34.20	0	60861..61208	+	115	46445673	-	pc0039	-	hypothetical protein
40	 37.72	0	61805..65227	-	1140	46445674	-	pc0040	-	hypothetical protein
41	 37.41	0	65317..68748	-	1143	46445675	-	pc0041	-	hypothetical protein
42	 38.71	0	68835..72272	-	1145	46445676	-	pc0042	-	hypothetical protein
43	 35.89	0	72654..73982	-	442	46445677	-	pc0043	-	hypothetical protein
44	 37.50	0	74061..77489	-	1142	46445678	-	pc0044	-	hypothetical protein
45	 38.47	0	77584..81045	-	1153	46445679	-	pc0045	-	hypothetical protein
46	 37.72	0	81362..84643	-	1093	46445680	-	pc0046	-	hypothetical protein
47	 42.16	+1	85064..85369	+	101	46445681	-	pc0047	-	hypothetical protein
48	 33.40	0	85501..87096	-	531	46445682	-	pc0048	-	hypothetical protein
49	 30.54	-1	88089..88946	-	285	46445683	-	pc0049	-	hypothetical protein
50	 35.33	0	89737..90789	-	350	46445684	-	pc0050	-	hypothetical protein
51	 37.44	0	91605..95060	-	1151	46445685	-	pc0051	-	hypothetical protein
52	 42.81	+2	95214..96353	-	379	46445686	-	pc0052	-	hypothetical protein
53	 35.73	0	96456..98582	-	708	46445687	-	pc0053	-	hypothetical protein
54	 39.03	+1	98629..101544	-	971	46445688	-	pc0054	-	hypothetical protein
55	 34.71	0	101504..102013	-	169	46445689	-	pc0055	-	hypothetical protein
56	 35.26	0	102365..103714	-	449	46445690	-	pc0056	-	hypothetical protein
57	 37.53	0	103747..107181	-	1144	46445691	-	pc0057	-	hypothetical protein
58	 38.95	0	107456..110497	-	1013	46445692	-	pc0058	-	hypothetical protein
59	 37.98	0	110545..113988	-	1147	46445693	-	pc0059	-	hypothetical protein
60	 32.75	0	114884..115738	-	284	46445694	-	pc0060	-	putative extracellular metalloproteinase
61	 34.69	0	116938..117600	-	220	46445695	-	pc0061	-	hypothetical protein
62	 34.74	0	117922..118632	-	236	46445696	-	pc0062	-	hypothetical protein
63	 34.35	0	119309..120196	-	295	46445697	-	pc0063	-	hypothetical protein
64	 34.72	0	121198..122781	-	527	46445698	-	pc0064	-	hypothetical protein
65	 33.88	0	123045..123593	-	182	46445699	-	pc0065	-	hypothetical protein
66	 38.17	0	123545..124453	-	302	46445700	-	pc0066	-	hypothetical protein
67	 32.99	0	124467..125639	-	390	46445701	-	pc0067	-	hypothetical protein
68	 29.51	-1	125921..126103	-	60	46445702	-	pc0068	-	hypothetical protein
69	 34.34	0	126400..127596	-	398	161611311	aspC	pc0069	-	aromatic amino acid aminotransferase
70	 35.00	0	127768..128007	-	79	46445704	-	pc0070	-	hypothetical protein
71	 37.86	0	128482..131085	-	867	46445705	topA	pc0071	-	fused DNA topoisomerase I/SWI domain-containing protein
72	 34.62	0	131167..132258	-	363	46445706	dprA	pc0072	-	putative protein required for chromosomal DNA transformation
73	 33.90	0	132397..133455	-	352	46445707	aroB	pc0073	-	putative 3-dehydroquinate synthase
74	 39.84	+1	133606..133851	-	81	46445708	-	pc0074	-	hypothetical protein
75	 38.62	0	133845..134090	+	81	46445709	-	pc0075	-	hypothetical protein
76	 32.93	0	134284..135036	-	250	46445710	-	pc0076	-	hypothetical protein
77	 35.63	0	135333..136115	+	260	46445711	parB	pc0077	-	putative chromosome partitioning protein
78	 35.53	0	136133..138322	+	729	46445712	copA	pc0078	-	putative copper-transporting ATPase
79	 35.57	0	138297..139280	+	327	46445713	-	pc0079	-	UDP-glucuronat epimerase
80	 30.22	-1	139323..139547	+	74	46445714	-	pc0080	-	hypothetical protein
81	 31.95	-1	139592..140242	+	216	46445715	-	pc0081	-	hypothetical protein
82	 37.00	0	140790..142289	-	499	46445716	-	pc0082	-	hypothetical protein
83	 38.82	0	142294..143295	-	333	46445717	gpsA	pc0083	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
84	 32.14	-1	143526..144194	-	222	46445718	-	pc0084	-	hypothetical protein
85	 35.83	0	144259..144858	-	199	46445719	-	pc0085	-	putative deoxyribonucleotide triphosphate pyrophosphatase
86	 34.58	0	145079..147250	-	723	46445720	-	pc0086	-	fused transcript cleavage factor/uncharacterized domain-containing protein
87	 35.37	0	147770..148210	+	146	46445721	-	pc0087	-	hypothetical protein
88	 34.17	0	148548..149741	+	397	46445722	-	pc0088	-	hypothetical protein
89	 35.32	0	149879..150937	+	352	46445723	mutY	pc0089	-	putative A/G-specific adenine glycosylase, mutY
90	 38.89	0	151176..151373	+	65	46445724	-	pc0090	-	hypothetical protein
91	 33.54	0	151673..152161	-	162	46445725	bcp	pc0091	-	putative bacterioferritin comigratory protein (BCP)
92	 37.00	0	152383..153417	+	344	46445726	hemB	pc0092	-	delta-aminolevulinic acid dehydratase
93	 35.88	0	153464..155626	-	720	46445727	-	pc0093	-	hypothetical protein
94	 33.98	0	155866..157098	+	410	46445728	napA	pc0094	-	putative Na(+)/H(+) antiporter
95	 36.62	0	157177..158577	+	466	46445729	nqrA	pc0095	-	Na(+)-translocating NADH-quinone reductase subunit A
96	 33.45	0	158570..159394	-	274	46445730	oppF	pc0096	-	ATP binding protein, component of oligopeptide permease, oppF
97	 39.47	+1	159391..160416	-	341	46445731	oppD	pc0097	-	ATP binding protein, component of oligopeptide permease, oppD
98	 34.29	0	160575..161306	+	243	46445732	-	pc0098	-	hypothetical protein
99	 37.22	0	161360..162775	+	471	46445733	-	pc0099	-	hypothetical protein
100	 35.92	0	162813..163391	+	192	46445734	-	pc0100	-	hypothetical protein
35.65	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.