IslandPath Analysis: Clostridium perfringens SM101



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.85   STD DEV: 3.57
Clostridium perfringens SM101, complete genome - 1..2897393
2558 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 29.69	0	236..1609	+	457	110803386	dnaA	CPR_0001	-	chromosomal replication initiation protein
2	 28.25	0	1903..3003	+	366	110803106	dnaN	CPR_0002	-	DNA polymerase III subunit beta
3	 28.99	0	3129..3335	+	68	110802524	-	CPR_0003	-	S4 domain-containing protein
4	 24.31	-1	3391..4476	+	361	110802319	recF	CPR_0004	-	recombination protein F
5	 30.27	0	4490..4750	+	86	110802474	-	CPR_0005	-	hypothetical protein
6	 33.39	+1	4987..6903	+	638	110803693	gyrB	CPR_0006	-	DNA gyrase subunit B
7	 31.71	0	6925..9444	+	839	110801534	gyrA	CPR_0007	-	DNA gyrase subunit A
8	 24.40	-1	15246..15749	+	167	110801545	-	CPR_0010	-	hypothetical protein
9	 27.53	0	16163..18919	+	918	110802161	-	CPR_0011	-	hypothetical protein
10	 28.32	0	19126..20520	+	464	110803344	-	CPR_0012	-	BFD/(2Fe-2S)-binding domain-containing protein
11	 28.21	0	20533..20766	+	77	110803928	-	CPR_0013	-	hypothetical protein
12	 32.47	+1	21118..22395	+	425	110801909	serS	CPR_0014	-	seryl-tRNA synthetase
13	 28.44	0	22575..23003	+	142	110802696	-	CPR_0015	-	hypothetical protein
14	 28.46	0	23816..24082	+	88	110803337	-	CPR_0018	-	hypothetical protein
15	 17.49	-2	24413..24595	-	60	110802429	-	CPR_0021	-	hypothetical protein
16	 26.64	0	24844..25725	+	293	110803720	-	CPR_0022	-	hypothetical protein
17	 31.52	0	25815..25979	-	54	110801704	-	CPR_0023	-	hypothetical protein
18	 28.56	0	26188..29664	+	1158	110802216	addB	CPR_0024	-	ATP-dependent nuclease subunit B
19	 29.29	0	29654..33466	+	1270	110802763	addA	CPR_0025	-	recombination helicase AddA
20	 26.32	0	33505..34773	-	422	110802983	-	CPR_0026	-	polyA polymerase family protein
21	 29.94	0	34910..35881	+	323	110803547	-	CPR_0027	-	HD domain-containing protein
22	 26.27	0	35912..37072	-	386	110803943	-	CPR_0028	-	ErfK/YbiS/YcfS/YnhG family protein
23	 30.14	0	37264..38484	+	406	110803414	pepT	CPR_0029	-	peptidase T
24	 29.79	0	38590..39465	-	291	110803370	-	CPR_0030	-	degV family protein
25	 25.18	-1	39903..41042	+	379	110803517	-	CPR_0032	-	hypothetical protein
26	 28.47	0	41233..42117	-	294	110802920	psd	CPR_0033	-	phosphatidylserine decarboxylase
27	 25.26	-1	42280..42849	+	189	110802708	-	CPR_0034	-	TetR family transcriptional regulator
28	 30.25	0	43123..44388	+	421	110801484	-	CPR_0036	-	transporter, putative
29	 34.26	+1	44391..44822	+	143	110803707	-	CPR_0037	-	cytidine/deoxycytidylate deaminase family protein
30	 27.23	0	44885..45343	+	152	110803166	-	CPR_0038	-	hypothetical protein
31	 35.48	+1	45652..46257	+	201	110801812	-	CPR_0039	-	hypothetical protein
32	 31.36	0	46356..47828	-	490	110802546	-	CPR_0040	-	hypothetical protein
33	 32.83	+1	48157..49353	+	398	110802823	plc	CPR_0041	-	phospholipase C
34	 27.29	0	49541..50467	+	308	110803864	-	CPR_0042	-	CobW/P47K family protein
35	 25.98	0	50487..51071	+	194	110802115	-	CPR_0043	-	hypothetical protein
36	 29.75	0	51074..51967	+	297	110801537	-	CPR_0044	-	permease family protein
37	 23.89	-1	51980..52699	+	239	110803179	-	CPR_0045	-	hypothetical protein
38	 30.42	0	52966..53754	+	262	110802679	lgt	CPR_0046	-	prolipoprotein diacylglyceryl transferase
39	 26.19	0	54526..55029	+	167	110802003	-	CPR_0048	-	putative lipoprotein
40	 29.53	0	55466..56752	+	428	110802801	brnQ	CPR_0049	-	branched-chain amino acid transport system II carrier protein
41	 25.87	0	57053..57856	+	267	110802411	-	CPR_0050	-	hypothetical protein
42	 19.80	-2	57840..58637	+	265	110802027	-	CPR_0051	-	hypothetical protein
43	 17.66	-2	58640..59392	+	250	110802620	-	CPR_0052	-	hypothetical protein
44	 28.37	0	59420..60064	+	214	110803070	-	CPR_0053	-	antibiotic ABC transporter, ATP-binding protein
45	 23.25	-1	60140..60625	-	161	110802975	folA	CPR_0054	-	dihydrofolate reductase
46	 30.35	0	60816..62459	+	547	110803673	dnaX	CPR_0055	-	DNA polymerase III subunits gamma and tau
47	 37.76	+2	62571..62909	+	112	110801488	-	CPR_0056	-	hypothetical protein
48	 32.33	0	63007..63603	+	198	110802201	recR	CPR_0057	-	recombination protein RecR
49	 25.09	-1	63829..64107	+	92	110803359	-	CPR_0058	-	hypothetical protein
50	 26.88	0	64123..64401	+	92	110803802	bofA	CPR_0059	-	pro-sigmaK processing inhibitor BofA
51	 22.90	-1	64677..65807	+	376	110801801	-	CPR_0060	-	hypothetical protein
52	 29.44	0	65971..66150	+	59	110803858	-	CPR_0061	-	hypothetical protein
53	 28.96	0	66219..66401	+	60	110803119	-	CPR_0062	-	hypothetical protein
54	 30.27	0	66565..67641	+	358	110802391	-	CPR_0063	-	aminotransferase, class V
55	 28.92	0	67711..68616	+	301	110803818	-	CPR_0064	-	putative D-3-phosphoglycerate dehydrogenase
56	 26.65	0	68750..70006	+	418	110801940	-	CPR_0065	-	hypothetical protein
57	 34.63	+1	70062..70757	-	231	110802685	mtnN	CPR_0066	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
58	 31.36	0	71133..71894	+	253	110803505	-	CPR_0067	-	HesA/MoeB/ThiF family protein
59	 29.17	0	72186..73361	+	391	110801674	-	CPR_0068	-	transporter, putative
60	 26.09	0	73377..74315	+	312	110802367	-	CPR_0069	-	acetyltransferase
61	 29.41	0	74407..75018	+	203	110802928	dGK2	CPR_0070	-	deoxynucleoside kinase family protein
62	 27.14	0	80628..81692	+	354	110802721	-	CPR_0072	-	extracellular solute-binding protein
63	 26.73	0	81767..82069	-	100	110803445	-	CPR_0073	-	hypothetical protein
64	 23.36	-1	82188..82829	-	213	110801924	-	CPR_0074	-	putative, lipoprotein signal peptidase
65	 26.99	0	83160..83963	+	267	110802663	-	CPR_0075	-	putative methyltransferase
66	 29.96	0	84152..84952	+	266	110803125	-	CPR_0076	-	hypothetical protein
67	 30.76	0	91596..92918	+	440	110803423	-	CPR_0079	-	putative amino acid permease
68	 25.37	0	92993..93193	+	66	110803327	-	CPR_0080	-	hypothetical protein
69	 28.69	0	93524..95548	+	674	110802271	glgB	CPR_0081	-	glycogen branching enzyme
70	 29.43	0	95591..97024	+	477	110803638	-	CPR_0082	-	glycogen synthase
71	 29.97	0	97054..99489	+	811	110801873	-	CPR_0083	-	glycogen phosphorylase
72	 28.50	0	99856..101676	+	606	110802434	-	CPR_0084	-	pullulanase
73	 28.38	0	101731..102174	+	147	110803347	-	CPR_0085	-	hypothetical protein
74	 29.65	0	102399..103565	+	388	110803507	glgC	CPR_0086	-	glucose-1-phosphate adenylyltransferase
75	 26.02	0	103595..104701	+	368	110803751	glgD	CPR_0087	-	glucose-1-phosphate adenylyltransferase, GlgD subunit
76	 26.85	0	104764..105210	+	148	110803021	-	CPR_0088	-	acetobutylicum phosphotransbutyrylase
77	 27.25	0	105377..106789	-	470	110802469	cls	CPR_0089	-	cardiolipin synthetase
78	 26.97	0	113027..113875	+	282	110803548	-	CPR_0091	-	SACPA operon antiterminator (sacT)
79	 31.04	0	113907..114386	-	159	110801542	-	CPR_0092	-	pts system, glucose-specific IIA component
80	 32.37	0	115034..116479	+	481	110802112	nagE	CPR_0093	-	PTS system, N-acetylglucosamine-specific IIBC component
81	 21.39	-2	116548..117066	-	172	110802978	-	CPR_0094	-	TetR family transcriptional regulator
82	 30.51	0	123190..125280	+	696	110802289	fusA	CPR_0096	-	elongation factor G
83	 23.63	-1	125703..125939	+	78	110803160	-	CPR_0097	-	hypothetical protein
84	 35.55	+1	126191..127138	+	315	110803732	-	CPR_0098	-	glucose kinase
85	 37.57	+2	127697..128239	+	180	110802491	-	CPR_0099	-	rubrerythrin
86	 25.96	0	128573..129196	+	207	110803299	-	CPR_0100	-	phosphoglycerate mutase family protein
87	 28.21	0	130082..130354	+	90	110802871	-	CPR_0101	-	hypothetical protein
88	 32.81	+1	130753..131706	-	317	110803647	ldh	CPR_0102	-	L-lactate dehydrogenase
89	 23.04	-1	132319..133494	+	391	110801635	-	CPR_0103	-	hypothetical protein
90	 27.21	0	133613..134053	+	146	110802139	-	CPR_0104	-	hypothetical protein
91	 27.57	0	134261..135058	+	265	110803048	-	CPR_0105	-	hypothetical protein
92	 30.31	0	135198..136520	-	440	110802030	-	CPR_0106	-	GTP-binding protein
93	 27.02	0	137279..137563	-	94	110802606	-	CPR_0107	-	hypothetical protein
94	 30.80	0	137986..139407	-	473	110803728	thiH	CPR_0108	-	thiamine biosynthesis protein ThiH
95	 29.76	0	139513..139764	-	83	110803147	-	CPR_0109	-	hypothetical protein
96	 30.01	0	140209..141771	+	520	110802967	-	CPR_0110	-	hypothetical protein
97	 32.02	0	141919..142146	+	75	110802359	-	CPR_0111	-	hypothetical protein
98	 28.89	0	142431..142655	+	74	110802010	-	CPR_0112	-	hypothetical protein
99	 26.77	0	142715..143674	-	319	110803411	-	CPR_0113	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
100	 22.51	-1	143687..144859	-	390	110802866	-	CPR_0114	-	hypothetical protein
28.85	MEAN

3.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.