IslandPath Analysis: Streptococcus gordonii str. Challis substr. CH1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.50   STD DEV: 4.81
Streptococcus gordonii str. Challis substr. CH1, complete genome - 1..2196662
2051 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.89	-1	166..1518	+	450	157149691	dnaA	SGO_0001	-	chromosomal replication initiation protein
2	 33.42	-1	1674..2810	+	378	157151517	dnaN	SGO_0002	-	DNA polymerase III subunit beta
3	 34.80	-1	2810..3013	+	67	157151188	-	SGO_0003	-	hypothetical protein
4	 28.13	-2	3023..3541	-	172	157150252	-	SGO_0004	-	putative lipoprotein
5	 27.40	-2	3582..6176	-	864	157150786	-	SGO_0005	-	hypothetical protein
6	 35.74	0	6216..7838	-	540	157150583	-	SGO_0006	-	ABC transporter ATP-binding protein
7	 35.68	-1	8068..9090	+	340	157150103	trpS	SGO_0007	-	tryptophanyl-tRNA synthetase II
8	 39.68	0	9195..10676	+	493	157150588	-	SGO_0008	-	inositol-5-monophosphate dehydrogenase
9	 31.12	-1	10780..11865	-	361	157149944	recF	SGO_0009	-	recombination protein F
10	 35.37	-1	11867..12259	-	130	157151552	-	SGO_0010	-	hypothetical protein
11	 33.41	-1	12414..13661	+	415	157150999	-	SGO_0011	-	M16 family proteinase
12	 33.64	-1	13661..14956	+	431	157150891	mpp	SGO_0012	-	M16 family peptidase
13	 38.27	0	15203..16033	+	276	157150301	-	SGO_0013	-	hypothetical protein
14	 38.89	0	16042..16581	+	179	157150093	pgsA	SGO_0014	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
15	 38.55	0	16585..17409	+	274	157150917	-	SGO_0015	-	cobalt transporter ATP-binding subunit
16	 38.10	0	17394..18233	+	279	157150162	cbiO	SGO_0016	-	cobalt transporter ATP-binding subunit
17	 35.09	-1	18226..19020	+	264	157150603	-	SGO_0017	-	ABC-type putative cobalt transport system, permease
18	 40.98	0	19222..19836	+	204	157151203	-	SGO_0018	-	hypothetical protein
19	 44.22	0	19913..20785	-	290	157150581	sdhA	SGO_0019	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
20	 37.80	0	20794..21465	-	223	157151322	sdhB	SGO_0020	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
21	 36.52	0	21791..22354	+	187	157150750	-	SGO_0021	-	hypothetical protein
22	 44.21	0	22565..23686	+	373	157150902	trmU	SGO_0022	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
23	 35.12	-1	23706..24320	+	204	157150287	-	SGO_0023	-	hypothetical protein
24	 36.46	0	24391..24486	+	31	157150700	-	SGO_0024	-	hypothetical protein
25	 42.76	0	24467..26386	+	639	157149984	gidA	SGO_0025	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
26	 38.94	0	26728..28707	+	659	157150426	-	SGO_0026	-	DHH subfamily 1 protein
27	 39.74	0	28704..29156	+	150	157150251	rplI	SGO_0027	-	50S ribosomal protein L9
28	 42.85	0	29183..30538	+	451	157149685	dnaC	SGO_0028	-	replicative DNA helicase
29	 35.40	-1	30540..30830	+	96	157151155	-	SGO_0029	-	hypothetical protein
30	 40.66	0	30955..32142	+	395	157150580	aspB	SGO_0030	-	aromatic amino acid aminotransferase
31	 38.83	0	32120..32902	+	260	157150562	recO	SGO_0031	-	DNA repair protein RecO
32	 42.42	0	32899..33900	+	333	157150072	plsX	SGO_0032	-	putative glycerol-3-phosphate acyltransferase PlsX
33	 35.83	0	33897..34136	+	79	157151465	acpP	SGO_0033	-	acyl carrier protein
34	 37.85	0	34289..34996	+	235	157151026	purC	SGO_0034	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
35	 42.55	0	35015..38758	+	1247	157151635	-	SGO_0035	-	phosphoribosylformylglycinamidine synthase
36	 45.25	0	38842..40284	+	480	157150020	purF	SGO_0036	-	amidophosphoribosyltransferase
37	 47.90	+1	40327..41349	+	340	157150745	purM	SGO_0037	-	phosphoribosylaminoimidazole synthetase
38	 48.55	+1	41346..41897	+	183	157149802	purN	SGO_0038	-	phosphoribosylglycinamide formyltransferase
39	 28.33	-2	41910..42608	+	232	157150257	-	SGO_0039	-	hypothetical protein
40	 48.39	+1	42605..44152	+	515	157151031	purH	SGO_0040	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
41	 32.35	-1	44149..44250	+	33	157150111	-	SGO_0041	-	hypothetical protein
42	 37.94	0	44481..45197	-	238	157150570	-	SGO_0042	-	GntR family transcriptional regulator
43	 41.15	0	45352..47130	+	592	157149977	-	SGO_0043	-	beta-galactosidase
44	 44.23	0	47127..47603	+	158	157150435	-	SGO_0044	-	PTS system, IIB component
45	 43.72	0	47630..48544	+	304	157149804	-	SGO_0045	-	PTS system, IIC component
46	 42.46	0	48531..49352	+	273	157150193	-	SGO_0046	-	PTS system, IID component
47	 41.91	0	49364..49771	+	135	157151209	-	SGO_0047	-	PTS system, IIA component
48	 43.56	0	49923..51086	+	387	157150602	-	SGO_0048	-	tagatose-6-phosphate ketose/aldose isomerase
49	 41.84	0	51312..52346	+	344	157151054	galM	SGO_0049	-	aldose 1-epimerase
50	 41.42	0	52440..53453	-	337	157150899	-	SGO_0050	-	hypothetical protein
51	 42.14	0	53446..54024	-	192	157151351	-	SGO_0051	-	hypothetical protein
52	 37.58	0	54011..54340	-	109	157151306	-	SGO_0052	-	PadR family transcriptional regulator
53	 30.30	-2	54550..54681	+	43	157149823	-	SGO_0053	-	hypothetical protein
54	 42.63	0	54712..56250	+	512	157150658	dltA	SGO_0054	-	D-alanine--D-alanyl carrier protein ligase
55	 40.54	0	56247..57494	+	415	157150049	dltB	SGO_0055	-	integral membrane protein
56	 38.75	0	57515..57754	+	79	157150792	dltC	SGO_0056	-	D-alanine--poly(phosphoribitol) ligase subunit 2
57	 41.61	0	57747..59015	+	422	157150190	-	SGO_0057	-	dltD protein
58	 43.83	0	59125..59610	+	161	157150009	-	SGO_0058	-	acetyltransferase
59	 38.19	0	59937..60224	+	95	157150474	pXO1	SGO_0059	-	hypothetical protein
60	 39.90	0	60303..63317	+	1004	157150930	-	SGO_0060	-	hypothetical protein
61	 43.20	0	63324..63779	+	151	157151388	-	SGO_0061	-	hypothetical protein
62	 39.36	0	63853..64101	+	82	157150633	-	SGO_0062	-	hypothetical protein
63	 43.30	0	64094..65347	+	417	157150151	-	SGO_0063	-	hypothetical protein
64	 45.17	0	65367..69785	+	1472	157150026	-	SGO_0064	-	FtsK/SpoIIIE family protein
65	 26.14	-2	69785..70882	+	365	157151627	-	SGO_0065	-	hypothetical protein
66	 34.97	-1	70894..71199	+	101	157150484	-	SGO_0066	-	D-3-phosphoglycerate dehydrogenase, putative
67	 33.40	-1	71229..72653	+	474	157150689	-	SGO_0067	-	prophage function domain-containing protein
68	 30.52	-2	72650..73183	+	177	157150370	-	SGO_0068	-	putative lipoprotein
69	 32.61	-1	73192..73746	+	184	157150168	-	SGO_0069	-	hypothetical protein
70	 31.11	-1	73756..74160	+	134	157151288	-	SGO_0070	-	merozoite surface protein 1
71	 37.60	0	74387..74644	+	85	157151082	-	SGO_0071	-	putative phage protein-like protein
72	 31.08	-1	74650..75537	+	295	157151699	-	SGO_0072	-	hypothetical protein
73	 33.96	-1	75530..75847	+	105	157150804	-	SGO_0073	-	hypothetical protein
74	 35.66	-1	76324..77568	+	414	157151242	-	SGO_0074	-	hypothetical protein
75	 25.76	-2	77592..78344	+	250	157149865	-	SGO_0075	-	hypothetical protein
76	 32.11	-1	78636..79043	+	135	157150326	-	SGO_0076	-	hypothetical protein
77	 36.15	0	79329..79541	+	70	157150263	-	SGO_0077	-	hypothetical protein
78	 30.47	-2	81145..81807	+	220	157151146	-	SGO_0078	-	hypothetical protein
79	 36.09	0	81809..82279	+	156	157151470	-	SGO_0079	-	hypothetical protein
80	 38.86	0	82287..83987	+	566	157150135	-	SGO_0080	-	hypothetical protein
81	 31.20	-1	84002..84658	+	218	157149698	-	SGO_0081	-	hypothetical protein
82	 33.65	-1	84655..84969	+	104	157150309	-	SGO_0082	-	hypothetical protein
83	 49.40	+1	85210..86037	-	275	157150416	-	SGO_0083	-	HAD superfamily hydrolase
84	 43.14	0	85972..86073	+	33	157151077	-	SGO_0084	-	hypothetical protein
85	 46.32	+1	86070..86816	-	248	157151541	-	SGO_0085	-	DeoR family transcriptional regulator
86	 41.67	0	86984..87391	-	135	157150040	-	SGO_0086	-	putative lipoprotein
87	 43.36	0	87704..88870	-	388	157149696	-	SGO_0087	-	major facilitator transporter
88	 43.10	0	88917..89438	-	173	157150436	-	SGO_0088	-	AraC family transcriptional regulator
89	 43.39	0	89598..90452	+	284	157150909	-	SGO_0089	-	cation efflux system protein
90	 38.23	0	90480..91010	-	176	157150992	-	SGO_0090	-	TetR family transcriptional regulator
91	 44.55	0	91144..93567	+	807	157151578	-	SGO_0091	-	integral membrane protein
92	 38.62	0	93748..94485	+	245	157149721	-	SGO_0092	-	hypothetical protein
93	 41.85	0	94466..95146	+	226	157150250	-	SGO_0093	-	hypothetical protein
94	 45.53	+1	95169..96431	+	420	157150727	-	SGO_0094	-	putative lipoprotein
95	 47.69	+1	96499..97452	-	317	157150919	mccF	SGO_0095	-	microcin immunity protein MccF, putative
96	 41.86	0	97516..98148	-	210	157150512	-	SGO_0096	-	hypothetical protein
97	 40.00	0	98442..98951	+	169	157150052	-	SGO_0097	-	hypothetical protein
98	 39.22	0	99028..99486	+	152	157151680	-	SGO_0098	-	ribonucleotide reductase-like protein
99	 43.60	0	99545..101638	-	697	157151248	pulA-2	SGO_0099	-	pullulanase, type I
100	 41.95	0	101873..102859	-	328	157150794	-	SGO_0100	-	maltose operon transcription repressor
40.50	MEAN

4.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.