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IslandPath Analysis: Chloroflexus aurantiacus J-10-fl

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.76 STD DEV: 3.69

Chloroflexus aurantiacus J-10-fl, complete genome - 1..5258541
3853 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.58	0	336..1775	+	479	163845604	-	Caur_0001	-	chromosomal replication initiator protein DnaA
2	 56.78	0	1940..3841	+	633	163845605	-	Caur_0002	-	AMP-dependent synthetase and ligase
3	 57.57	0	4062..5996	+	644	163845606	-	Caur_0003	-	acetate--CoA ligase
4	 56.93	0	6173..7702	-	509	163845607	-	Caur_0004	-	protein kinase
5	 54.75	0	7817..9226	-	469	163845608	-	Caur_0005	-	GTP-binding protein Era
6	 50.30	-1	9231..10391	-	386	163845609	-	Caur_0006	-	hypothetical protein
7	 57.61	0	10490..10765	-	91	163845610	-	Caur_0007	-	cell division topological specificity factor MinE
8	 55.31	0	10781..11581	-	266	163845611	-	Caur_0008	-	septum site-determining protein MinD
9	 55.75	0	11591..12259	-	222	163845612	-	Caur_0009	-	septum site-determining protein MinC
10	 57.64	0	12961..13968	+	335	163845613	-	Caur_0010	-	glyceraldehyde-3-phosphate dehydrogenase, type I
11	 56.89	0	13965..15263	+	432	163845614	-	Caur_0011	-	major facilitator transporter
12	 55.18	0	16693..17049	+	118	163845615	-	Caur_0013	-	regulatory protein ArsR
13	 57.26	0	17072..17305	+	77	163845616	-	Caur_0014	-	redox-active disulfide protein 2
14	 56.47	0	17362..18450	+	362	163845617	-	Caur_0015	-	permease
15	 51.44	-1	18495..18875	-	126	163845618	-	Caur_0016	-	hypothetical protein
16	 55.60	0	20916..21719	+	267	163845619	-	Caur_0018	-	hypothetical protein
17	 55.99	0	23546..24463	+	305	163845620	-	Caur_0020	-	phosphonate ABC transporter, periplasmic phosphonate-binding protein
18	 55.76	0	24460..25935	+	491	163845621	-	Caur_0021	-	ATPase domain-containing protein
19	 59.66	0	25913..26554	+	213	163845622	-	Caur_0022	-	response regulator receiver
20	 61.34	+1	26713..27669	+	318	163845623	-	Caur_0023	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
21	 58.38	0	27681..28826	+	381	163845624	-	Caur_0024	-	polysulphide reductase NrfD
22	 58.79	0	28879..32139	+	1086	163845625	-	Caur_0025	-	molybdopterin oxidoreductase
23	 59.09	0	32700..33029	+	109	163845626	-	Caur_0026	-	alkylhydroperoxidase
24	 59.05	0	33043..33672	+	209	163845627	-	Caur_0027	-	formylmethanofuran dehydrogenase subunit E region
25	 57.43	0	34058..34501	-	147	163845628	-	Caur_0028	-	iron-sulfur cluster assembly accessory protein
26	 60.09	0	34623..36386	-	587	163845629	-	Caur_0029	-	protoheme IX farnesyltransferase
27	 56.94	0	36402..36617	-	71	163845630	-	Caur_0030	-	hypothetical protein
28	 52.44	-1	36999..37940	-	313	163845631	-	Caur_0031	-	diguanylate cyclase
29	 54.71	0	37933..38877	-	314	163845632	-	Caur_0032	-	alcohol dehydrogenase
30	 57.34	0	39515..40447	+	310	163845633	-	Caur_0033	-	methionyl-tRNA formyltransferase
31	 51.72	-1	41293..41727	+	144	163845634	-	Caur_0034	-	hypothetical protein
32	 57.64	0	41762..42337	+	191	163845635	-	Caur_0035	-	hypothetical protein
33	 59.94	0	42729..43412	-	227	163845636	-	Caur_0036	-	phospholipid/glycerol acyltransferase
34	 58.73	0	43420..43860	-	146	163845637	-	Caur_0037	-	hypothetical protein
35	 57.17	0	43869..44489	-	206	163845638	-	Caur_0038	-	hypothetical protein
36	 59.02	0	44486..45361	-	291	163845639	-	Caur_0039	-	hypothetical protein
37	 58.31	0	49439..50515	+	358	163845640	-	Caur_0041	-	3-isopropylmalate dehydrogenase
38	 55.64	0	50585..50992	+	135	163845641	-	Caur_0042	-	cobalamin B12-binding domain-containing protein
39	 61.51	+1	50996..51946	+	316	163845642	-	Caur_0043	-	LAO/AO transport system ATPase
40	 54.99	0	52177..53520	+	447	163845643	-	Caur_0044	-	phosphomannomutase
41	 56.52	0	53777..54850	+	357	163845644	-	Caur_0045	-	hypothetical protein
42	 58.50	0	54907..56289	+	460	163845645	-	Caur_0046	-	hypothetical protein
43	 61.05	+1	56310..57092	+	260	163845646	-	Caur_0047	-	periplasmic binding protein
44	 59.04	0	57089..57967	+	292	163845647	-	Caur_0048	-	hypothetical protein
45	 61.39	+1	57978..58508	+	176	163845648	-	Caur_0049	-	hypothetical protein
46	 64.31	+2	58527..58823	+	98	163845649	-	Caur_0050	-	putative reductase
47	 44.55	-2	58908..59567	+	219	163845650	-	Caur_0051	-	hypothetical protein
48	 55.21	0	60158..61117	+	319	163845651	-	Caur_0052	-	hypothetical protein
49	 52.91	-1	61181..62830	-	549	163845652	-	Caur_0053	-	methyltransferase type 11
50	 56.17	0	62849..64306	-	485	163845653	-	Caur_0054	-	hypothetical protein
51	 57.29	0	64394..66088	-	564	163845654	-	Caur_0055	-	protein kinase
52	 49.70	-1	66229..66888	+	219	163845655	-	Caur_0056	-	transcriptional regulator domain-containing protein
53	 57.57	0	66922..68229	+	435	163845656	-	Caur_0057	-	3-phosphoshikimate 1-carboxyvinyltransferase
54	 56.75	0	68226..68810	+	194	163845657	-	Caur_0058	-	hypothetical protein
55	 55.28	0	68831..69814	+	327	163845658	-	Caur_0059	-	UDP-glucose 4-epimerase
56	 52.89	-1	69804..71756	+	650	163845659	-	Caur_0060	-	protein kinase
57	 52.32	-1	72070..73017	+	315	163845660	-	Caur_0061	-	ATPase
58	 58.31	0	73019..75568	+	849	163845661	-	Caur_0062	-	hypothetical protein
59	 59.18	0	75650..75916	+	88	163845662	-	Caur_0063	-	acyl-CoA-binding protein
60	 55.09	0	76425..76709	-	94	163845663	-	Caur_0064	-	RNP-1 like RNA-binding protein
61	 59.32	0	77165..77749	+	194	163845664	-	Caur_0065	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
62	 54.47	0	77807..78511	-	234	163845665	-	Caur_0066	-	hypothetical protein
63	 54.55	0	78514..79503	-	329	163845666	-	Caur_0067	-	CRISPR-associated autoregulator DevR family protein
64	 54.04	0	79534..81093	-	519	163845667	-	Caur_0068	-	hypothetical protein
65	 47.08	-2	81155..81394	-	79	163845668	-	Caur_0069	-	hypothetical protein
66	 56.48	0	81409..83814	-	801	163845669	-	Caur_0070	-	CRISPR-associated helicase Cas3
67	 55.59	0	83818..84846	-	342	163845670	-	Caur_0071	-	regulatory protein, DeoR
68	 52.54	-1	85231..86709	+	492	163845671	-	Caur_0072	-	sigma-70 family RNA polymerase sigma factor
69	 58.49	0	86711..89500	+	929	163845672	-	Caur_0073	-	tetratricopeptide TPR_4
70	 58.12	0	89548..91068	+	506	163845673	-	Caur_0074	-	polysaccharide biosynthesis protein
71	 48.33	-2	91216..92115	+	299	163845674	-	Caur_0075	-	D12 class N6 adenine-specific DNA methyltransferase
72	 42.64	-2	92099..93226	+	375	163845675	-	Caur_0076	-	hypothetical protein
73	 55.23	0	93459..94595	+	378	163845676	-	Caur_0077	-	glycosyl transferase group 1
74	 46.77	-2	96498..96884	+	128	163845677	-	Caur_0078	-	hypothetical protein
75	 55.10	0	96990..97862	+	290	163845678	-	Caur_0079	-	glycosyl transferase family protein
76	 57.47	0	98452..103038	-	1528	163845679	-	Caur_0080	-	hypothetical protein
77	 55.67	0	103793..104938	+	381	163845680	-	Caur_0081	-	hypothetical protein
78	 60.00	0	105220..106434	-	404	163845681	-	Caur_0082	-	citrate transporter
79	 58.10	0	106505..107578	-	357	163845682	-	Caur_0083	-	phosphotransferase domain-containing protein
80	 60.81	+1	107630..108739	+	369	163845683	-	Caur_0084	-	glycosyl transferase group 1
81	 58.20	0	109679..110044	+	121	163845684	-	Caur_0085	-	hypothetical protein
82	 58.17	0	110797..113220	-	807	163845685	-	Caur_0086	-	ATP-dependent protease La
83	 61.41	+1	113440..114276	+	278	163845686	-	Caur_0087	-	alpha/beta hydrolase fold-containing protein
84	 45.94	-2	114596..115063	-	155	163845687	-	Caur_0088	-	hypothetical protein
85	 54.12	0	115078..115332	-	84	163845688	-	Caur_0089	-	hypothetical protein
86	 52.46	-1	115639..116187	-	182	163845689	-	Caur_0090	-	HEAT repeat-containing PBS lyase
87	 60.60	+1	116225..119440	-	1071	163845690	-	Caur_0091	-	HEAT repeat-containing PBS lyase
88	 56.75	0	119415..119777	-	120	163845691	-	Caur_0092	-	HEAT repeat-containing PBS lyase
89	 50.43	-1	121577..122044	-	155	163845692	-	Caur_0093	-	hypothetical protein
90	 59.66	0	122914..123741	+	275	163845693	-	Caur_0094	-	naphthoate synthase
91	 61.70	+1	124211..125116	+	301	163845694	-	Caur_0095	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
92	 62.50	+1	125639..127102	+	487	163845695	-	Caur_0096	-	O-succinylbenzoate-CoA ligase
93	 57.75	0	131222..131860	-	212	163845696	-	Caur_0097	-	hypothetical protein
94	 54.63	0	131916..132455	-	179	163845697	-	Caur_0098	-	hexapaptide repeat-containing transferase
95	 58.33	0	132456..133331	+	291	163845698	-	Caur_0099	-	transcriptional regulator IclR
96	 59.83	0	134516..135217	-	233	163845699	-	Caur_0100	-	FeoA family protein
97	 58.17	0	135421..136197	+	258	163845700	-	Caur_0101	-	enoyl-CoA hydratase/isomerase
98	 53.24	0	136350..138815	+	821	163845701	-	Caur_0102	-	PAS sensor protein
99	 59.94	0	138858..140105	+	415	163845702	-	Caur_0103	-	Xaa-Pro aminopeptidase family enzyme
100	 59.94	0	140184..141551	+	455	163845703	-	Caur_0104	-	major facilitator transporter
56.76	MEAN

3.69	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.