IslandPath Analysis: Sulfolobus acidocaldarius DSM 639



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.55
Sulfolobus acidocaldarius DSM 639, complete genome - 1..2225959
2223 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.59	0	101..1261	+	386	70605854	cdc6-3	Saci_0001	-	cell division control protein 6-like protein 3
2	 32.44	-1	1294..1629	+	111	70605855	-	Saci_0002	-	hypothetical protein
3	 33.10	-1	1665..2504	+	279	70605856	-	Saci_0003	-	hypothetical protein
4	 31.54	-1	2553..3110	-	185	70605857	-	Saci_0004	-	hypothetical protein
5	 35.14	0	3049..3768	-	239	70605858	-	Saci_0005	-	hypothetical protein
6	 32.14	-1	3801..4052	-	83	70605859	-	Saci_0006	-	ArsR family transcriptional regulator
7	 30.59	-1	4138..4392	-	84	70605860	-	Saci_0007	-	hypothetical protein
8	 35.42	0	4456..5271	-	271	70605861	-	Saci_0008	-	carbon-nitrogen hydrolase
9	 37.62	0	5262..6101	-	279	70605862	nadE	Saci_0009	-	NH(3)-dependent NAD(+) synthetase
10	 36.09	0	6117..7637	-	506	70605863	-	Saci_0010	-	hypothetical protein
11	 35.45	0	7727..8245	-	172	70605864	-	Saci_0011	-	putative NTPase
12	 37.07	0	8367..9035	+	222	70605865	-	Saci_0012	-	hypothetical protein
13	 34.85	0	8989..9516	-	175	70605866	nudF	Saci_0013	-	ADP-ribose pyrophosphatase
14	 29.89	-2	9521..10129	-	202	70605867	-	Saci_0014	-	hypothetical protein
15	 36.57	0	10199..11032	+	277	70605868	-	Saci_0015	-	endonuclease IV
16	 33.19	-1	11025..11702	+	225	70605869	-	Saci_0016	-	hypothetical protein
17	 34.28	0	11673..12095	-	140	70605870	-	Saci_0017	-	hypothetical protein
18	 31.98	-1	12269..12931	-	220	70605871	-	Saci_0018	-	hypothetical protein
19	 31.43	-1	12928..13242	-	104	70605872	-	Saci_0019	-	hypothetical protein
20	 37.63	0	13239..14261	-	340	70605874	-	Saci_0020	-	hypothetical protein
21	 38.13	0	13855..14250	+	131	70605873	-	Saci_0021	-	hypothetical protein
22	 27.45	-2	14302..14658	+	118	70605875	-	Saci_0022	-	hypothetical protein
23	 36.84	0	14685..15683	+	332	70605876	nadA	Saci_0023	-	quinolinate synthetase
24	 34.84	0	15604..16728	-	374	70605877	sufS	Saci_0024	-	selenocysteine lyase
25	 36.44	0	16715..18421	-	568	70605878	-	Saci_0025	-	acetyl-coenzyme A synthetase
26	 27.25	-2	18433..18909	-	158	70605879	-	Saci_0026	-	hypothetical protein
27	 35.34	0	18899..19645	-	248	70605880	-	Saci_0027	-	hypothetical protein
28	 31.00	-1	19654..19953	-	99	70605881	-	Saci_0028	-	hypothetical protein
29	 38.40	0	20102..21088	+	328	70605882	trxR	Saci_0029	-	thioredoxin reductase
30	 31.99	-1	21085..21975	+	296	70605883	-	Saci_0030	-	hypothetical protein
31	 34.78	0	21901..22383	-	160	70605884	-	Saci_0031	-	hypothetical protein
32	 35.61	0	22370..22633	-	87	70605885	-	Saci_0032	-	hypothetical protein
33	 34.17	0	22557..22913	-	118	70605886	-	Saci_0033	-	hypothetical protein
34	 35.76	0	22932..23591	+	219	70605887	-	Saci_0034	-	ribosome biogenesis protein
35	 35.40	0	23574..24155	-	193	70605888	-	Saci_0035	-	hypothetical protein
36	 21.09	-2	24221..24367	-	48	70605889	-	Saci_0036	-	hypothetical protein
37	 31.91	-1	24505..25560	-	351	70605890	-	Saci_0037	-	hypothetical protein
38	 35.99	0	25618..26484	-	288	70605891	-	Saci_0038	-	hypothetical protein
39	 37.65	0	26513..27022	+	169	70605892	-	Saci_0039	-	hypothetical protein
40	 34.54	0	27019..27600	-	193	70605893	-	Saci_0040	-	hypothetical protein
41	 37.17	0	27676..28014	-	112	70605894	-	Saci_0041	-	thioredoxin
42	 36.83	0	28098..28811	+	237	70605895	-	Saci_0042	-	hypothetical protein
43	 30.62	-1	28791..29417	-	208	70605896	-	Saci_0043	-	phosphoglycerate mutase
44	 36.97	0	29614..30108	+	164	70605897	-	Saci_0044	-	hypothetical protein
45	 37.72	0	30140..30481	+	113	70605898	-	Saci_0045	-	hypothetical protein
46	 33.45	-1	30432..32177	-	581	70605899	-	Saci_0046	-	hypothetical protein
47	 38.19	0	32386..33312	+	308	70605900	-	Saci_0047	-	nucleoside hydrolase
48	 35.70	0	33275..33697	-	140	70605901	-	Saci_0048	-	ferric uptake regulation protein
49	 33.12	-1	34242..34703	+	153	70605902	-	Saci_0049	-	hypothetical protein
50	 30.83	-1	34784..35782	-	332	70605903	nurA	Saci_0050	-	putative 5'-3' nuclease
51	 32.09	-1	35772..38432	-	886	70605904	rad50	Saci_0051	-	DNA double-strand break repair rad50 ATPase
52	 33.33	-1	38429..39577	-	382	70605905	mre11	Saci_0052	-	DNA double-strand break repair Mre11 nuclease
53	 35.62	0	39583..41070	-	495	70605906	-	Saci_0053	-	hypothetical protein
54	 37.17	0	41173..41589	-	138	70605907	-	Saci_0054	-	hypothetical protein
55	 31.86	-1	41687..42094	-	135	70605908	-	Saci_0055	-	hypothetical protein
56	 38.36	0	42224..43735	+	503	70605909	-	Saci_0057	-	hypothetical protein
57	 34.20	0	43732..44193	-	153	70605910	bas1	Saci_0058	-	2-cys peroxiredoxin
58	 35.75	0	44222..45793	+	523	70605911	-	Saci_0059	-	phosphoenolpyruvate carboxylase
59	 35.05	0	45790..46605	+	271	70605912	-	Saci_0060	-	hypothetical protein
60	 35.42	0	46630..47589	-	319	70605913	-	Saci_0061	-	hypothetical protein
61	 36.88	0	47573..47995	-	140	70605914	-	Saci_0062	-	methylmalonyl-CoA mutase C-terminal domain/subunit
62	 38.31	0	48401..48601	+	66	70605915	-	Saci_0064	-	DNA-binding protein 7e
63	 34.52	0	48720..49055	+	111	70605916	-	Saci_0065	-	hypothetical protein
64	 35.40	0	49384..50886	+	500	70605917	lysS	Saci_0067	-	lysyl-tRNA synthetase type II
65	 36.58	0	50870..51946	-	358	70605918	-	Saci_0068	-	hypothetical protein
66	 33.48	0	51981..52646	+	221	70605919	-	Saci_0069	-	hypothetical protein
67	 36.52	0	52633..53166	+	177	70605920	-	Saci_0070	-	hypothetical protein
68	 39.15	0	53147..54160	+	337	70605921	-	Saci_0071	-	hypothetical protein
69	 33.82	0	54137..55165	-	342	70605922	-	Saci_0072	-	hypothetical protein
70	 31.40	-1	55188..55652	+	154	70605923	-	Saci_0073	-	acetyltransferase
71	 35.04	0	55685..58033	+	782	70605924	-	Saci_0074	-	DNA polymerase II
72	 35.03	0	58023..59261	-	412	70605925	-	Saci_0075	-	DNA primase
73	 35.82	0	59271..60356	-	361	70605926	tys1	Saci_0076	-	tyrosyl-tRNA synthetase
74	 32.19	-1	60401..60751	-	116	70605927	-	Saci_0077	-	hypothetical protein
75	 35.31	0	60797..61201	-	134	70605928	-	Saci_0078	-	hypothetical protein
76	 37.88	0	61236..62510	+	424	70605929	-	Saci_0079	-	hypothetical protein
77	 41.33	+1	62537..63049	+	170	70605930	rps13p	Saci_0080	-	30S ribosomal protein S13P
78	 39.36	0	63067..63597	+	176	70605931	rps4p	Saci_0081	-	30S ribosomal protein S4
79	 42.11	+1	63581..63979	+	132	70605932	rps11p	Saci_0082	-	30S ribosomal protein S11P
80	 36.23	0	63991..64785	+	264	70605933	rpoD	Saci_0083	-	DNA-directed RNA polymerase subunit D
81	 37.24	0	64809..65141	+	110	70605934	-	Saci_0084	-	50S ribosomal protein L18e
82	 35.79	0	65138..65584	+	148	70605935	rpl13p	Saci_0085	-	50S ribosomal protein L13P
83	 39.57	0	65581..65997	+	138	70605936	rps9p	Saci_0086	-	30S ribosomal protein S9P
84	 36.82	0	66004..66204	+	66	70605937	-	Saci_0087	-	DNA-directed RNA polymerase subunit N
85	 39.23	0	66214..66891	+	225	70605938	rps2P	Saci_0088	-	30S ribosomal protein S2
86	 37.31	0	66888..67742	+	284	70605939	-	Saci_0089	-	hypothetical protein
87	 37.12	0	67735..68421	+	228	70605940	-	Saci_0090	-	hypothetical protein
88	 40.24	0	68588..69499	+	303	70605941	-	Saci_0091	-	isopentenyl pyrophosphate isomerase
89	 35.55	0	69496..70488	+	330	70605942	gds	Saci_0092	-	geranylgeranyl pyrophosphate synthetase
90	 35.76	0	70488..71474	+	328	70605943	-	Saci_0093	-	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase
91	 35.79	0	71498..72148	+	216	70605944	pgmB	Saci_0094	-	beta-phosphoglucomutase
92	 38.60	0	72935..74701	+	588	70605945	cbaA	Saci_0097	-	cytochrome c oxidase polypeptide I
93	 37.57	0	74714..75799	+	361	70605946	-	Saci_0098	-	hypothetical protein
94	 35.48	0	75808..75993	+	61	70605947	-	Saci_0099	-	hypothetical protein
95	 32.79	-1	76005..76736	-	243	70605948	-	Saci_0100	-	hypothetical protein
96	 33.95	0	76782..76943	-	53	70605949	-	Saci_0101	-	hypothetical protein
97	 37.27	0	77181..77561	+	126	70605950	lrs14	Saci_0102	-	Lrs14
98	 38.39	0	77583..78254	-	223	70605951	-	Saci_0103	-	hypothetical protein
99	 37.61	0	78251..78718	-	155	70605952	-	Saci_0104	-	hypothetical protein
100	 34.69	0	78712..79299	-	195	70605953	-	Saci_0105	-	hypothetical protein
37.01	MEAN

3.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.