IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 64.64	0	42..1373	+	443	58579624	dnaA	XOO0001	-	chromosomal replication initiation protein
2	 61.67	0	1651..2751	+	366	58579625	dnaN	XOO0002	-	DNA polymerase III subunit beta
3	 64.23	0	4003..5109	+	368	58579626	recF	XOO0003	-	recombination protein F
4	 64.27	0	5045..7669	+	874	58579627	gyrB	XOO0004	-	DNA gyrase subunit B
5	 66.19	0	7737..8573	+	278	58579628	-	XOO0005	-	hypothetical protein
6	 64.06	0	8760..9566	+	268	58579629	-	XOO0006	-	hypothetical protein
7	 59.88	-1	9843..11036	+	397	58579630	-	XOO0007	-	hypothetical protein
8	 63.84	0	11190..11861	+	223	58579631	tonB	XOO0008	-	TonB protein
9	 64.17	0	11946..12707	+	253	58579632	exbB	XOO0009	-	biopolymer transport ExbB protein
10	 59.34	-1	12754..13176	+	140	58579633	exbD1	XOO0010	-	biopolymer transport ExbD1 protein
11	 60.14	-1	13180..13593	+	137	58579634	exbD2	XOO0011	-	biopolymer transport ExbD2 protein
12	 64.97	0	13889..14656	-	255	58579635	pdxJ	XOO0012	-	pyridoxal phosphate biosynthetic protein PdxJ
13	 66.03	0	14667..14978	-	103	58579636	-	XOO0013	-	hypothetical protein
14	 66.60	0	15011..16471	-	486	58579637	cls	XOO0014	-	cardiolipin synthetase
15	 65.08	0	17118..18128	-	336	122878976	cbbFC	XOO0015	-	fructose-1,6-bisphosphatase
16	 65.50	0	18400..19602	-	400	161899024	tyrB	XOO0016	-	aromatic amino acid aminotransferase
17	 67.86	+1	19708..21882	+	724	122878977	yncD	XOO0017	-	iron transporter
18	 66.30	0	22503..23048	+	181	58579642	-	XOO0019	-	hypothetical protein
19	 62.39	0	23162..24142	-	326	58579643	-	XOO0020	-	IS1479 transposase
20	 66.84	0	24190..25356	-	388	58579645	lldD	XOO0022	-	L-lactate dehydrogenase
21	 66.31	0	25503..26069	-	188	58579646	-	XOO0023	-	hypothetical protein
22	 66.37	0	27068..27406	-	112	58579649	-	XOO0026	-	transcriptional regulator
23	 63.96	0	27544..28761	+	405	122878978	-	XOO0027	-	trans-2-enoyl-CoA reductase
24	 67.74	+1	29389..30411	-	340	58579651	kdgK	XOO0028	-	2-keto-3-deoxygluconate kinase
25	 61.40	0	30581..30979	+	132	58579652	iroN	XOO0029	-	TonB-dependent receptor
26	 61.30	0	31234..32202	+	322	58579653	-	XOO0030	-	putative transposase
27	 56.95	-1	32317..34293	-	658	58579654	-	XOO0031	-	hypothetical protein
28	 63.03	0	34382..35398	+	338	58579655	-	XOO0032	-	transposase
29	 61.83	0	35897..36289	-	130	58579656	-	XOO0033	-	IS1479 transposase
30	 65.09	0	36337..36972	-	211	122878979	-	XOO0034	-	hypothetical protein
31	 68.50	+1	37153..37971	-	272	58579658	-	XOO0035	-	hypothetical protein
32	 64.72	0	38076..38588	+	170	58579659	-	XOO0036	-	hypothetical protein
33	 65.50	0	39651..40250	-	199	58579661	proP	XOO0038	-	proline/betaine transporter
34	 62.44	0	40464..41432	-	322	58579662	-	XOO0039	-	transposase
35	 65.57	0	41929..42201	-	90	58579663	trxA	XOO0040	-	thioredoxin
36	 63.66	0	42222..42620	-	132	58579664	atsE	XOO0041	-	AtsE
37	 67.24	0	42712..43404	-	230	58579665	-	XOO0042	-	hypothetical protein
38	 67.02	0	43574..44137	-	187	58579666	-	XOO0043	-	MutT-nudix family protein
39	 63.84	0	44160..44336	+	58	58579667	-	XOO0044	-	hypothetical protein
40	 66.67	0	45395..45514	+	39	58579669	-	XOO0046	-	metalloprotease
41	 68.27	+1	45511..45822	+	103	58579670	-	XOO0047	-	hypothetical protein
42	 59.16	-1	46077..47102	-	341	58579671	tnpA	XOO0048	-	transposase
43	 63.46	0	47165..48223	-	352	58579672	-	XOO0049	-	putative transposase
44	 59.22	-1	48362..48643	+	93	58579673	-	XOO0050	-	hypothetical protein
45	 57.63	-1	48636..48956	+	106	58579674	-	XOO0051	-	hypothetical protein
46	 61.89	0	49347..50309	-	320	58579677	tnp	XOO0054	-	transposase
47	 62.91	0	50378..50803	+	141	58579678	-	XOO0055	-	hypothetical protein
48	 68.36	+1	51004..51891	+	295	58579679	sulA	XOO0056	-	cell division inhibitor
49	 69.50	+1	52197..52514	+	105	58579680	ygiY	XOO0057	-	two-component system sensor protein
50	 63.12	0	52974..53876	-	300	58579681	bpH1	XOO0058	-	histone H1-like protein
51	 65.41	0	54067..55503	+	478	122878980	htrA	XOO0059	-	protease DO
52	 66.17	0	55596..55994	+	132	58579683	-	XOO0060	-	hypothetical protein
53	 62.61	0	56139..56483	+	114	58579684	-	XOO0061	-	hypothetical protein
54	 63.02	0	56480..56863	+	127	58579685	-	XOO0062	-	hypothetical protein
55	 58.33	-1	57088..57459	+	123	58579686	-	XOO0063	-	putative transposase
56	 59.97	-1	57425..58021	+	198	58579687	-	XOO0064	-	putative transposase
57	 63.04	0	58273..59901	-	542	122878981	hpaF	XOO0065	-	HpaF
58	 58.64	-1	60777..63341	-	854	58579689	hrpF	XOO0066	-	HrpF protein
59	 63.65	0	65043..66038	+	331	58579692	-	XOO0069	-	putative ISXo8 transposase
60	 56.57	-2	66179..66505	+	108	58579693	-	XOO0070	-	putative ISXo8 transposase
61	 59.63	-1	66620..67102	-	160	58579694	-	XOO0071	-	putative transposase
62	 61.26	0	67104..67436	-	110	58579695	-	XOO0072	-	IS1479 transposase
63	 62.89	0	67300..67590	-	96	121632013	-	XOO4698	-	IS1479 transposase
64	 62.82	0	67740..68726	-	328	58579696	-	XOO0073	-	putative ISXo8 transposase
65	 62.99	0	68314..69075	-	253	121632014	-	XOO4699	-	transposase
66	 66.03	0	69423..69737	+	104	121632015	-	XOO4700	-	hypothetical protein
67	 62.59	0	69734..71719	+	661	58579697	-	XOO0074	-	hypothetical protein
68	 55.63	-2	72134..72604	-	156	58579698	hpaB	XOO0075	-	HpaB
69	 53.19	-2	72659..72940	-	93	58579699	hrpE	XOO0076	-	hypothetical protein
70	 60.49	0	73021..73263	-	80	58579700	hrpD6	XOO0077	-	HrpD6
71	 62.51	0	73273..74211	-	312	58579701	hrpD5	XOO0078	-	HrpD5
72	 63.29	0	74208..75035	-	275	58579702	hpaA	XOO0079	-	HpaA
73	 62.45	0	75032..75292	-	86	58579703	hrcS	XOO0080	-	hypothetical protein
74	 58.74	-1	75297..75977	-	226	58579704	hrcR	XOO0081	-	type III secretion system protein
75	 63.88	0	75928..76932	-	334	58579705	hrcQ	XOO0082	-	hypothetical protein
76	 64.19	0	76974..77618	-	214	58579706	hpaP	XOO0083	-	hrpC3
77	 61.51	0	77615..79552	-	645	58579707	hrcV	XOO0084	-	HrcV
78	 59.43	-1	79546..80817	-	423	58579708	hrcU	XOO0085	-	type III secretion system protein HrcU
79	 62.72	0	80840..81295	+	151	58579709	hrpB1	XOO0086	-	HrpB1
80	 61.11	0	81326..81721	+	131	58579710	hrpB2	XOO0087	-	HrpB2
81	 61.42	0	81723..82484	+	253	58579711	hrpB3	XOO0088	-	HrpB3
82	 67.14	0	82492..83121	+	209	58579712	hrpB4	XOO0089	-	HrpB4
83	 68.80	+1	83106..83807	+	233	58579713	hrpB5	XOO0090	-	type III secretion system protein HrpB
84	 65.54	0	83797..85125	+	442	58579714	hrcN	XOO0091	-	type III secretion system ATPase
85	 65.69	0	85118..85627	+	169	58579715	hrpB7	XOO0092	-	HrpB7
86	 61.49	0	85624..86454	+	276	58579716	hrpB8	XOO0093	-	HrpB8
87	 62.54	0	86537..88354	+	605	58579717	hrcC	XOO0094	-	hypothetical protein
88	 60.48	0	89093..89512	-	139	58579718	hpa1	XOO0095	-	Hpa1
89	 55.67	-2	89888..90451	+	187	58579719	hpa2	XOO0096	-	Hpa2
90	 61.90	0	90915..92468	-	517	58579720	-	XOO0097	-	hypothetical protein
91	 65.20	0	93566..93769	-	67	58579722	-	XOO0099	-	putative transposase
92	 63.29	0	94333..94539	-	68	58579725	-	XOO0102	-	putative transposase
93	 66.37	0	94683..95024	-	113	58579726	-	XOO0103	-	hypothetical protein
94	 64.30	0	95104..97767	+	887	58579727	-	XOO0104	-	hypothetical protein
95	 58.42	-1	97786..98076	-	96	58579728	-	XOO0105	-	hypothetical protein
96	 54.81	-2	98079..98525	+	148	58579729	-	XOO0106	-	transposase
97	 64.40	0	98876..100681	-	601	58579731	-	XOO0108	-	ABC transporter substrate binding protein
98	 65.71	0	100841..101782	+	313	122878982	-	XOO0109	-	hypothetical protein
99	 63.00	0	101975..103339	+	454	58579733	-	XOO0110	-	hypothetical protein
100	 66.91	0	103336..104964	-	542	58579734	-	XOO0111	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.