IslandPath Analysis: Marinobacter aquaeolei VT8



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.44   STD DEV: 3.61
Marinobacter aquaeolei VT8, complete genome - 1..4326849
3858 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.46	0	466..1929	+	487	120552945	dnaA	Maqu_0001	-	chromosomal replication initiation protein
2	 56.25	0	1990..3093	+	367	120552946	-	Maqu_0002	-	DNA polymerase III, beta subunit
3	 53.22	-1	3112..4383	+	423	120552947	-	Maqu_0003	-	hypothetical protein
4	 53.48	-1	4487..5608	+	373	120552948	-	Maqu_0004	-	DNA replication and repair protein RecF
5	 57.47	0	5676..8090	+	804	120552949	gyrB	Maqu_0005	-	DNA gyrase subunit B
6	 56.38	0	8193..8960	-	255	120552950	-	Maqu_0006	-	hypothetical protein
7	 59.31	0	9067..10344	-	425	120552951	-	Maqu_0007	-	aminotransferase class-III
8	 60.63	0	10433..12205	-	590	120552952	-	Maqu_0008	-	lipid ABC transporter ATPase/inner membrane protein
9	 58.42	0	12432..14225	+	597	120552953	-	Maqu_0009	-	ABC transporter related
10	 63.12	+1	14235..16487	-	750	120552954	-	Maqu_0010	-	exodeoxyribonuclease V, alpha subunit
11	 63.15	+1	16484..20209	-	1241	120552955	-	Maqu_0011	-	exodeoxyribonuclease V, beta subunit
12	 63.02	+1	20206..23799	-	1197	120552956	-	Maqu_0012	-	exodeoxyribonuclease V, gamma subunit
13	 59.40	0	24208..24675	-	155	120552957	-	Maqu_0013	-	hypothetical protein
14	 62.38	+1	24832..26532	+	566	120552958	-	Maqu_0014	-	hypothetical protein
15	 61.96	+1	26529..28781	+	750	120552959	-	Maqu_0015	-	DEAD_2 domain-containing protein
16	 55.47	0	28911..29303	+	130	120552960	-	Maqu_0016	-	hypothetical protein
17	 61.86	+1	29425..30423	+	332	120552961	-	Maqu_0017	-	secretion protein HlyD family protein
18	 60.66	0	30416..33145	+	909	120552962	-	Maqu_0018	-	ABC transporter related
19	 60.25	0	33147..34268	+	373	120552963	-	Maqu_0019	-	ABC-2 type transporter
20	 59.68	0	34312..34683	-	123	120552964	-	Maqu_0020	-	glyoxalase/bleomycin resistance protein/dioxygenase
21	 56.19	0	34813..35337	+	174	120552965	-	Maqu_0021	-	Lipocalin family protein
22	 49.21	-2	35476..35727	+	83	120552966	-	Maqu_0022	-	hypothetical protein
23	 49.59	-2	35738..37072	+	444	120552967	-	Maqu_0023	-	hypothetical protein
24	 51.54	-1	37142..37855	+	237	120552968	-	Maqu_0024	-	hypothetical protein
25	 57.62	0	38428..39168	-	246	120552969	-	Maqu_0025	-	IstB ATP binding domain-containing protein
26	 59.26	0	39155..40693	-	512	120552970	-	Maqu_0026	-	integrase catalytic subunit
27	 52.78	-1	40775..42214	-	479	120552971	-	Maqu_0027	-	hypothetical protein
28	 51.77	-1	42216..44471	-	751	120552972	-	Maqu_0028	-	GTPase subunit of restriction endonuclease-like
29	 51.96	-1	44484..45299	-	271	120552973	-	Maqu_0029	-	hypothetical protein
30	 50.61	-1	45550..46857	-	435	120552974	-	Maqu_0030	-	restriction modification system DNA specificity subunit
31	 59.94	0	46857..48476	-	539	120552975	-	Maqu_0031	-	N-6 DNA methylase
32	 55.27	0	48722..50362	+	546	120552976	-	Maqu_0032	-	S-type pyocin domain-containing protein
33	 44.10	-2	50374..50661	+	95	120552977	-	Maqu_0033	-	barstar (barnase inhibitor)
34	 49.27	-2	54420..55172	-	250	120552978	-	Maqu_0035	-	hypothetical protein
35	 47.77	-2	55169..56221	-	350	120552979	-	Maqu_0036	-	hypothetical protein
36	 57.54	0	56683..58128	+	481	120552980	-	Maqu_0037	-	cation transporter
37	 62.58	+1	58186..60267	-	693	120552981	-	Maqu_0038	-	glycine--tRNA ligase
38	 62.19	+1	60270..61364	-	364	120552982	glyQ	Maqu_0039	-	glycyl-tRNA synthetase subunit alpha
39	 60.90	0	61427..62830	-	467	120552983	trkA	Maqu_0040	-	potassium transporter peripheral membrane component
40	 62.90	+1	62827..64128	-	433	120552984	-	Maqu_0041	-	sun protein
41	 61.75	+1	64131..65066	-	311	120552985	-	Maqu_0042	-	methionyl-tRNA formyltransferase
42	 55.56	0	65147..65650	-	167	120552986	-	Maqu_0043	-	peptide deformylase
43	 59.39	0	66118..67134	+	338	120552987	-	Maqu_0044	-	peptidoglycan-binding LysM
44	 62.56	+1	67168..68385	+	405	120552988	-	Maqu_0045	-	DNA protecting protein DprA
45	 62.13	+1	68401..68973	+	190	120552989	-	Maqu_0046	-	SUA5/yciO/yrdC domain-containing protein
46	 61.49	+1	68982..69908	+	308	120552990	-	Maqu_0047	-	coproporphyrinogen III oxidase
47	 60.63	0	69901..70728	+	275	120552991	-	Maqu_0048	-	shikimate 5-dehydrogenase
48	 59.95	0	70767..71540	+	257	120552992	-	Maqu_0049	-	MotA/TolQ/ExbB proton channel
49	 60.55	0	71544..72377	+	277	120552993	-	Maqu_0050	-	OmpA/MotB domain-containing protein
50	 54.40	0	72503..72820	+	105	120552994	-	Maqu_0051	-	hypothetical protein
51	 56.14	0	72860..73315	-	151	120552995	-	Maqu_0052	-	heat shock protein Hsp20
52	 60.19	0	73506..74045	-	179	120552996	-	Maqu_0053	-	anhydrase family 3 protein
53	 59.14	0	74247..76292	+	681	120552997	-	Maqu_0054	-	oligopeptidase A
54	 56.35	0	76349..76600	+	83	120552998	-	Maqu_0055	-	hypothetical protein
55	 61.00	0	76659..77981	-	440	120552999	-	Maqu_0056	-	Na+/H+ antiporter NhaC
56	 60.61	0	78096..78326	-	76	120553000	-	Maqu_0057	-	hypothetical protein
57	 61.01	0	78586..80283	+	565	120553001	-	Maqu_0058	-	diguanylate cyclase
58	 57.36	0	80286..80672	-	128	120553002	-	Maqu_0059	-	DoxX family protein
59	 58.66	0	80753..81439	-	228	120553003	-	Maqu_0060	-	hypothetical protein
60	 62.51	+1	81592..82938	-	448	120553004	-	Maqu_0061	-	MATE efflux family protein
61	 57.69	0	83127..84251	+	374	120553005	-	Maqu_0062	-	cytochrome c oxidase, subunit II
62	 58.96	0	84309..85892	+	527	120553006	-	Maqu_0063	-	cytochrome-c oxidase
63	 59.97	0	85906..86502	+	198	120553007	-	Maqu_0064	-	cytochrome c oxidase assembly protein CtaG/Cox11
64	 57.88	0	86519..87406	+	295	120553008	-	Maqu_0065	-	cytochrome c oxidase, subunit III
65	 57.35	0	87418..87621	-	67	120553009	-	Maqu_0066	-	hypothetical protein
66	 64.00	+1	87719..88468	+	249	120553010	-	Maqu_0067	-	hypothetical protein
67	 61.99	+1	88449..89090	+	213	120553011	-	Maqu_0068	-	hypothetical protein
68	 62.15	+1	89106..90212	+	368	120553012	-	Maqu_0069	-	cytochrome oxidase assembly
69	 60.91	0	90209..91129	+	306	120553013	-	Maqu_0070	-	protoheme IX farnesyltransferase
70	 61.80	+1	91162..91818	+	218	120553014	-	Maqu_0071	-	electron transport protein SCO1/SenC
71	 63.67	+1	91901..93103	+	400	120553015	-	Maqu_0072	-	hypothetical protein
72	 65.01	+2	93147..95621	+	824	120553016	-	Maqu_0073	-	ATP-dependent helicase HrpB
73	 62.12	+1	95575..96453	-	292	120553017	-	Maqu_0074	-	initiation factor 2B related
74	 56.56	0	96508..96873	-	121	120553018	-	Maqu_0075	-	hypothetical protein
75	 59.34	0	97027..97845	+	272	120553019	-	Maqu_0076	-	RimK domain-containing protein ATP-grasp
76	 56.38	0	98015..99190	+	391	120553020	-	Maqu_0077	-	ornithine decarboxylase
77	 64.59	+1	99221..100423	-	400	120553021	-	Maqu_0078	-	major facilitator superfamily transporter
78	 57.58	0	100435..100830	-	131	120553022	ectC	Maqu_0079	-	L-ectoine synthase
79	 63.73	+1	100881..102311	-	476	120553023	-	Maqu_0080	-	hypothetical protein
80	 65.82	+2	102308..103720	-	470	120553024	-	Maqu_0081	-	hypothetical protein
81	 62.81	+1	103808..104170	+	120	120553025	-	Maqu_0082	-	hypothetical protein
82	 62.15	+1	104424..106526	+	700	120553026	-	Maqu_0083	-	putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
83	 61.57	+1	106662..108074	+	470	120553027	-	Maqu_0084	-	sigma-54 dependent trancsriptional regulator
84	 56.70	0	108387..109439	+	350	120553028	-	Maqu_0085	-	TRAP dicarboxylate transporter- DctP subunit
85	 57.43	0	109554..110192	+	212	120553029	-	Maqu_0086	-	tripartite ATP-independent periplasmic transporter DctQ
86	 57.29	0	110192..111556	+	454	120553030	-	Maqu_0087	-	TRAP dicarboxylate transporter, DctM subunit
87	 58.21	0	111570..112349	+	259	120553031	-	Maqu_0088	-	3-hydroxybutyrate dehydrogenase
88	 62.75	+1	112366..114354	+	662	120553032	-	Maqu_0089	-	acetoacetyl-CoA synthetase
89	 59.14	0	114820..117063	+	747	120553033	-	Maqu_0090	-	isocitrate dehydrogenase, NADP-dependent
90	 65.33	+2	117139..118332	-	397	120553034	-	Maqu_0091	-	sodium/hydrogen exchanger
91	 60.08	0	118337..118807	-	156	120553035	-	Maqu_0092	-	ybaK/ebsC protein
92	 63.75	+1	118868..120172	-	434	120553036	-	Maqu_0093	-	alanine racemase domain-containing protein
93	 62.70	+1	120175..121584	-	469	120553037	-	Maqu_0094	-	FAD-linked oxidoreductase
94	 63.59	+1	121587..121976	-	129	120553038	-	Maqu_0095	-	cytochrome c family protein
95	 58.58	0	122103..123326	+	407	120553039	-	Maqu_0096	-	diguanylate cyclase with PAS/PAC sensor
96	 60.30	0	123398..124684	+	428	120553040	-	Maqu_0097	-	beta-lactamase
97	 52.48	-1	124774..125076	+	100	120553041	-	Maqu_0098	-	hypothetical protein
98	 55.42	0	125081..126085	-	334	120553042	-	Maqu_0099	-	hypothetical protein
99	 59.37	0	126187..129735	+	1182	120553043	-	Maqu_0100	-	multi-sensor hybrid histidine kinase
100	 56.96	0	129725..130270	+	181	120553044	-	Maqu_0101	-	hypothetical protein
57.44	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.