IslandPath Analysis: Pelotomaculum thermopropionicum SI



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.79   STD DEV: 6.39
Pelotomaculum thermopropionicum SI, complete genome - 1..3025375
2920 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.81	0	1..1344	+	447	147676336	dnaA	PTH_0001	-	chromosomal replication initiation protein
2	 51.89	0	1494..2603	+	369	147676337	DnaN	PTH_0002	-	DNA polymerase sliding clamp subunit
3	 50.68	0	2628..3722	+	364	147676338	RecF	PTH_0003	-	recombinational DNA repair ATPase
4	 41.77	-1	3741..3989	+	82	147676339	-	PTH_0004	-	hypothetical protein
5	 53.42	0	4049..5980	+	643	147676340	GyrB	PTH_0005	-	type IIA topoisomerase, B subunit
6	 51.32	0	6049..7638	-	529	147676341	-	PTH_0006	-	hypothetical protein
7	 53.06	0	8063..8356	+	97	147676342	-	PTH_0007	-	hypothetical protein
8	 56.28	0	8894..11320	+	808	147676343	GyrA	PTH_0008	-	type IIA topoisomerase, A subunit
9	 60.90	+1	11634..12518	+	294	147676344	SNZ1	PTH_0009	-	pyridoxine biosynthesis protein
10	 61.93	+1	12660..13250	+	196	147676345	PDX2	PTH_0010	-	glutamine amidotransferase subunit PdxT
11	 60.52	+1	13698..14852	+	384	147676346	-	PTH_0011	-	serine-pyruvate aminotransferase/ aspartate aminotransferase
12	 57.75	0	14849..16429	+	526	147676347	SerA	PTH_0012	-	D-3-phosphoglycerate dehydrogenase
13	 59.10	0	16565..17833	+	422	147676348	SerS	PTH_0013	-	seryl-tRNA synthetase
14	 54.36	0	17865..18701	+	278	147676349	-	PTH_0014	-	metal-dependent hydrolase of the TIM-barrel fold
15	 56.75	0	19396..20535	+	379	147676350	CaiA	PTH_0015	-	acyl-CoA dehydrogenases
16	 58.14	0	20707..21480	+	257	147676351	FixA	PTH_0016	-	electron transfer flavoprotein, beta subunit
17	 59.90	0	21498..22457	+	319	147676352	FixB	PTH_0017	-	electron transfer flavoprotein, alpha subunit
18	 58.04	0	22480..23778	+	432	147676353	FixC	PTH_0018	-	dehydrogenases
19	 59.38	0	23775..24062	+	95	147676354	FixX	PTH_0019	-	ferredoxin-like protein
20	 53.80	0	24205..24678	-	157	147676355	MarR	PTH_0020	-	transcriptional regulator
21	 49.10	0	24898..25176	+	92	147676356	-	PTH_0021	-	hypothetical protein
22	 62.91	+1	25202..26026	-	274	147676357	-	PTH_0022	-	glycosyltransferase
23	 55.64	0	26544..26924	+	126	147676358	-	PTH_0023	-	hypothetical protein
24	 44.81	-1	26921..27190	+	89	147676359	-	PTH_0024	-	hypothetical protein
25	 63.06	+1	27395..27865	+	156	147676360	CumB	PTH_0025	-	cytosine/adenosine deaminases
26	 50.72	0	28217..28981	-	254	147676361	-	PTH_0026	-	hypothetical protein
27	 44.33	-1	29441..29722	+	93	147676362	-	PTH_0027	-	hypothetical protein
28	 51.81	0	29700..31436	+	578	147676363	-	PTH_0028	-	hypothtical hydrogenase
29	 50.35	0	31454..32605	+	383	147676364	-	PTH_0029	-	sigma factor PP2C-like phosphatase
30	 46.89	-1	32766..33473	+	235	147676365	IclR	PTH_0030	-	transcriptional regulator
31	 52.66	0	33552..34322	+	256	147676366	-	PTH_0031	-	hypothetical protein
32	 52.47	0	34307..35257	+	316	147676367	UhpC	PTH_0032	-	sugar phosphate permease
33	 41.50	-1	35427..35720	-	97	147676368	-	PTH_0033	-	hypothetical protein
34	 46.78	-1	35720..36061	-	113	147676369	-	PTH_0034	-	hypothetical protein
35	 50.58	0	36352..37035	+	227	147676370	OmpR	PTH_0035	-	response regulator
36	 55.11	0	37032..38468	+	478	147676371	-	PTH_0036	-	membrane-associated sensory histidine kinase
37	 53.94	0	38715..40121	+	468	147676372	AcrA	PTH_0037	-	membrane-fusion protein
38	 50.46	0	40178..40942	+	254	147676373	SalX	PTH_0038	-	peptide ABC transporter ATPase
39	 55.34	0	40930..42147	+	405	147676374	SalY	PTH_0039	-	peptide ABC transporter permease
40	 52.86	0	42240..42659	+	139	147676375	-	PTH_0040	-	hypothetical protein
41	 57.28	0	42886..45048	+	720	147676376	-	PTH_0041	-	hypothetical protein
42	 53.82	0	45059..45595	+	178	147676377	-	PTH_0042	-	hypothetical protein
43	 49.28	0	45562..45699	+	45	147676378	-	PTH_0043	-	hypothetical protein
44	 50.15	0	45966..46292	+	108	147676379	-	PTH_0044	-	hypothetical protein
45	 49.41	0	46358..46780	+	140	147676380	Fur	PTH_0045	-	Fe2+/Zn2+ uptake regulation proteins
46	 58.42	0	46826..47371	+	181	147676381	-	PTH_0046	-	hypothetical protein
47	 46.10	-1	47724..48968	+	414	147676382	-	PTH_0047	-	signal transduction protein
48	 47.64	0	48978..49676	+	232	147676383	OmpR	PTH_0048	-	response regulator
49	 55.71	0	49855..51186	+	443	147676384	GlnA	PTH_0049	-	glutamine synthetase
50	 49.37	0	51366..52712	+	448	147676385	GdhA	PTH_0050	-	glutamate dehydrogenase
51	 63.45	+1	53804..55480	+	558	147676386	XerD	PTH_0051	-	DNA polymerase III, gamma/tau subunits
52	 54.40	0	55515..55832	+	105	147676387	-	PTH_0052	-	hypothetical protein
53	 61.19	+1	55836..56438	+	200	147676388	RecR	PTH_0053	-	recombinational DNA repair protein
54	 55.06	0	56489..56755	+	88	147676389	-	PTH_0054	-	hypothetical protein
55	 65.02	+1	56838..57503	+	221	147676390	-	PTH_0055	-	hypothetical protein
56	 61.55	+1	57512..58606	+	364	147676391	PorA	PTH_0056	-	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
57	 62.03	+1	58706..59482	+	258	147676392	PorB	PTH_0057	-	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit
58	 61.85	+1	59463..60023	+	186	147676393	PorG	PTH_0058	-	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
59	 53.10	0	60071..60328	+	85	147676394	-	PTH_0059	-	ferredoxin
60	 62.05	+1	60394..60588	+	64	147676395	-	PTH_0060	-	hypothetical protein
61	 62.66	+1	60692..62212	+	506	147676396	LdcC	PTH_0061	-	arginine/lysine/ornithine decarboxylases
62	 61.44	+1	62245..62895	+	216	147676397	Tmk	PTH_0062	-	thymidylate kinase
63	 60.32	+1	62864..63871	+	335	147676398	DnaX	PTH_0063	-	DNA polymerase III, gamma/tau subunits
64	 54.03	0	63889..64782	+	297	147676399	-	PTH_0064	-	hypothetical protein
65	 58.48	0	64761..65102	+	113	147676400	-	PTH_0065	-	hypothetical protein
66	 62.51	+1	65143..66009	+	288	147676401	-	PTH_0066	-	methyltransferase
67	 50.59	0	66045..66299	-	84	147676402	AbrB	PTH_0067	-	regulators of stationary/sporulation gene expression
68	 64.52	+1	66516..66608	+	30	147676403	-	PTH_0068	-	hypothetical protein
69	 58.47	0	66705..68339	+	544	147676404	MetG	PTH_0069	-	methionyl-tRNA synthetase
70	 60.57	+1	68361..69131	+	256	147676405	TatD	PTH_0070	-	Mg-dependent DNase
71	 56.85	0	69189..69728	+	179	147676406	BtuR	PTH_0071	-	ATP:corrinoid adenosyltransferase
72	 51.93	0	69787..70227	+	146	147676407	-	PTH_0072	-	hypothetical protein
73	 58.26	0	70365..71090	-	241	147676408	LivF	PTH_0073	-	ABC-type branched-chain amino acid transport systems, ATPase component
74	 58.40	0	71090..71863	-	257	147676409	LivG	PTH_0074	-	ABC-type branched-chain amino acid transport systems, ATPase component
75	 57.50	0	71844..72869	-	341	147676410	LivM	PTH_0075	-	ABC-type branched-chain amino acid transport system, permease component
76	 55.71	0	72879..73763	-	294	147676411	LivH	PTH_0076	-	branched-chain amino acid ABC-type transport system, permease components
77	 55.35	0	73877..75034	-	385	147676412	LivK	PTH_0077	-	ABC-type branched-chain amino acid transport systems, periplasmic component
78	 56.18	0	75252..76262	-	336	147676413	-	PTH_0079	-	hypothetical protein
79	 59.80	0	75462..76481	+	339	147676414	-	PTH_0078	-	hypothetical protein
80	 60.81	+1	76598..77485	+	295	147676415	KsgA	PTH_0080	-	dimethyladenosine transferase
81	 51.17	0	77510..77980	+	156	147676416	-	PTH_0081	-	hypothetical protein
82	 57.73	0	78053..78880	-	275	147676417	-	PTH_0082	-	hypothetical protein
83	 56.98	0	79007..79894	+	295	147676418	-	PTH_0083	-	hypothetical protein
84	 57.24	0	79996..81003	+	335	147676419	-	PTH_0084	-	hypothetical protein
85	 54.88	0	81100..81540	+	146	147676420	-	PTH_0085	-	hypothetical protein
86	 56.93	0	81613..82023	+	136	147676421	-	PTH_0086	-	hypothetical protein
87	 57.91	0	82415..83362	+	315	147676422	-	PTH_0087	-	hypothetical protein
88	 55.51	0	83554..85095	+	513	147676423	-	PTH_0088	-	hypothetical protein
89	 57.67	0	85227..86282	+	351	147676424	-	PTH_0089	-	hypothetical protein
90	 50.83	0	86406..86708	+	100	147676425	-	PTH_0090	-	hypothetical protein
91	 60.39	+1	86721..87341	+	206	147676426	-	PTH_0091	-	hypothetical protein
92	 49.40	0	88096..88431	+	111	147676427	-	PTH_0092	-	hypothetical protein
93	 57.27	0	88401..88847	+	148	147676428	-	PTH_0093	-	hypothetical protein
94	 63.06	+1	88837..89556	-	239	147676429	-	PTH_0094	-	divalent heavy-metal cations transporter
95	 56.63	0	89601..90158	-	185	147676430	-	PTH_0095	-	hypothetical protein
96	 62.27	+1	90265..91128	+	287	147676431	IspE	PTH_0096	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
97	 54.48	0	91213..91893	+	226	147676432	GntR	PTH_0097	-	transcriptional regulator
98	 52.10	0	91893..92654	+	253	147676433	-	PTH_0098	-	hypothetical protein
99	 58.57	0	92736..93773	+	345	147676434	-	PTH_0099	-	hypothetical protein
100	 52.38	0	93873..94943	+	356	147676435	NtrB	PTH_0100	-	signal transduction histidine kinase
53.79	MEAN

6.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.