IslandPath Analysis: Burkholderia cenocepacia AU 1054



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.90   STD DEV: 4.25
Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence - 1..2788459
2472 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.47	-1	19..1329	+	436	107025344	-	Bcen_2986	-	cytochrome c, class I
2	 62.00	-1	1641..2561	-	306	107025345	-	Bcen_2987	-	LysR family transcriptional regulator
3	 63.41	0	2671..3408	+	245	107025346	-	Bcen_2988	-	short-chain dehydrogenase/reductase SDR
4	 64.54	0	3465..4547	+	360	107025347	-	Bcen_2989	-	NADH:flavin oxidoreductase/NADH oxidase
5	 60.81	-1	4709..5545	+	278	107025348	-	Bcen_2990	-	alpha/beta hydrolase fold
6	 55.13	-2	5622..6011	+	129	107025349	-	Bcen_2991	-	limonene-1,2-epoxide hydrolase
7	 68.00	0	6210..7409	+	399	107025350	-	Bcen_2992	-	peptidase M20D, amidohydrolase
8	 68.99	0	7466..8797	+	443	107025351	-	Bcen_2993	-	major facilitator transporter
9	 69.92	0	8816..9736	-	306	107025352	-	Bcen_2994	-	LysR family transcriptional regulator
10	 67.70	0	9873..10646	+	257	107025353	-	Bcen_2995	-	extracellular solute-binding protein
11	 69.44	0	10702..11817	+	371	107025354	-	Bcen_2996	-	succinylglutamate desuccinylase/aspartoacylase
12	 67.15	0	12028..12855	-	275	107025355	-	Bcen_2997	-	IclR family transcriptional regulator
13	 68.99	0	13044..14246	+	400	107025356	-	Bcen_2998	-	beta-ketoadipyl CoA thiolase
14	 70.35	0	14347..14943	-	198	107025357	-	Bcen_2999	-	hypothetical protein
15	 69.70	0	14959..15519	-	186	107025358	-	Bcen_3000	-	GCN5-related N-acetyltransferase
16	 65.03	0	15516..16373	-	285	107025359	-	Bcen_3001	-	methyltransferase type 11
17	 68.48	0	16685..18229	+	514	107025360	-	Bcen_3002	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
18	 68.41	0	18578..20185	+	535	107025361	-	Bcen_3003	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
19	 68.30	0	20300..21769	-	489	107025362	-	Bcen_3004	-	succinic semialdehyde dehydrogenase
20	 67.36	0	21861..23150	-	429	107025363	-	Bcen_3005	-	4-aminobutyrate aminotransferase
21	 71.37	+1	23271..24779	+	502	107025364	-	Bcen_3006	-	GntR family transcriptional regulator
22	 70.25	0	25049..25885	-	278	107025365	-	Bcen_3007	-	hypothetical protein
23	 71.23	+1	25989..27062	+	357	107025366	-	Bcen_3008	-	selenophosphate synthetase
24	 69.36	0	27135..27728	+	197	107025367	-	Bcen_3009	-	lysine exporter protein LysE/YggA
25	 66.48	0	27957..29036	+	359	107025368	-	Bcen_3010	-	purine nucleoside permease
26	 69.39	0	29264..29557	-	97	107025369	-	Bcen_3011	-	hypothetical protein
27	 65.77	0	29966..30970	-	334	107025370	-	Bcen_3012	-	LysR family transcriptional regulator
28	 66.35	0	31064..32005	+	313	107025371	-	Bcen_3013	-	Alpha/beta hydrolase fold-3
29	 70.11	0	32044..33261	+	405	107025372	-	Bcen_3014	-	secretion protein HlyD
30	 65.54	0	33307..36492	+	1061	107025373	-	Bcen_3015	-	hydrophobe/amphiphile efflux-1 HAE1
31	 70.10	0	36503..38044	+	513	107025374	-	Bcen_3016	-	RND efflux system, outer membrane lipoprotein, NodT
32	 61.11	-1	38431..38844	+	137	107025375	-	Bcen_3017	-	hypothetical protein
33	 68.46	0	39037..39927	-	296	107025376	-	Bcen_3018	-	LysR family transcriptional regulator
34	 64.40	0	40029..40469	+	146	107025377	-	Bcen_3019	-	transmembrane pair
35	 67.72	0	40572..41423	-	283	107025378	-	Bcen_3020	-	alpha/beta hydrolase fold
36	 62.62	-1	41753..42889	+	378	107025379	-	Bcen_3021	-	hypothetical protein
37	 59.62	-1	42895..43731	+	278	107025380	-	Bcen_3022	-	hypothetical protein
38	 69.09	0	43754..44083	-	109	107025381	-	Bcen_3023	-	hypothetical protein
39	 69.09	0	44109..45470	-	453	107025382	-	Bcen_3024	-	two component, sigma54 specific, Fis family transcriptional regulator
40	 70.81	0	45460..47364	-	634	107025383	-	Bcen_3025	-	periplasmic sensor signal transduction histidine kinase
41	 65.74	0	47514..48923	-	469	107025384	-	Bcen_3026	-	citrate carrier protein
42	 65.25	0	49314..50087	+	257	107025385	-	Bcen_3027	-	NLPA lipoprotein
43	 67.94	0	50164..51576	+	470	107025386	-	Bcen_3028	-	flavin-dependent oxidoreductase
44	 71.31	+1	51595..52779	+	394	107025387	-	Bcen_3029	-	ABC transporter related
45	 70.02	0	52772..53428	+	218	107025388	-	Bcen_3030	-	binding-protein-dependent transport systems inner membrane component
46	 66.90	0	53480..54322	+	280	107025389	-	Bcen_3031	-	hypothetical protein
47	 72.94	+1	54319..55530	+	403	107025390	-	Bcen_3032	-	Acyl-CoA dehydrogenase, type 2-like
48	 65.93	0	55547..56356	-	269	107025391	-	Bcen_3033	-	hypothetical protein
49	 67.53	0	56463..57734	+	423	107025392	-	Bcen_3034	-	cobalamin synthesis protein, P47K
50	 71.29	+1	57763..58713	+	316	107025393	-	Bcen_3035	-	putative GTP cyclohydrolase
51	 64.42	0	58707..59285	+	192	107025394	-	Bcen_3036	-	6-pyruvoyl-tetrahydropterin synthase-like
52	 65.60	0	59285..59845	+	186	107025395	-	Bcen_3037	-	carbonic anhydrase
53	 70.02	0	59849..61219	+	456	107025396	-	Bcen_3038	-	dihydroorotase
54	 61.72	-1	61216..61680	-	154	107025397	-	Bcen_3039	-	AsnC family transcriptional regulator
55	 67.94	0	61849..62475	+	208	107025398	-	Bcen_3040	-	lysine exporter protein LysE/YggA
56	 71.14	0	62508..63356	-	282	107025399	-	Bcen_3041	-	XRE family transcriptional regulator
57	 67.94	0	63494..64513	+	339	107025400	-	Bcen_3042	-	uncharacterized membrane-anchored protein
58	 67.08	0	64510..65235	+	241	107025401	-	Bcen_3043	-	peptidase M50
59	 68.03	0	65302..66696	-	464	107025402	-	Bcen_3044	-	D-galactonate transporter
60	 72.24	+1	66944..68521	+	525	107025403	-	Bcen_3045	-	aldehyde dehydrogenase
61	 65.86	0	68649..69020	-	123	107025404	-	Bcen_3046	-	PilT protein-like
62	 66.67	0	69017..69214	-	65	107025405	-	Bcen_3047	-	hypothetical protein
63	 67.57	0	69400..69954	+	184	107025406	-	Bcen_3048	-	hypothetical protein
64	 65.68	0	70069..70983	-	304	107025407	-	Bcen_3049	-	5-dehydro-4-deoxyglucarate dehydratase
65	 68.92	0	71213..72766	+	517	107025408	-	Bcen_3050	-	galactarate dehydratase
66	 62.94	0	72852..73334	-	160	107025409	-	Bcen_3051	-	AsnC family transcriptional regulator
67	 67.20	0	73461..74591	+	376	107025410	-	Bcen_3052	-	extracellular ligand-binding receptor
68	 68.48	0	74588..76078	+	496	107025411	-	Bcen_3053	-	aminotransferase, class IV
69	 69.21	0	76213..76605	+	130	107025412	-	Bcen_3054	-	hypothetical protein
70	 67.43	0	76618..77139	+	173	107025413	-	Bcen_3055	-	RbsD or FucU transport
71	 65.07	0	77327..77764	+	145	107025414	-	Bcen_3056	-	DoxX
72	 66.38	0	77868..79244	-	458	107025415	-	Bcen_3057	-	major facilitator transporter
73	 66.33	0	79500..80678	-	392	107025416	-	Bcen_3058	-	extracellular ligand-binding receptor
74	 63.89	0	80862..81113	-	83	107025417	-	Bcen_3059	-	hypothetical protein
75	 67.42	0	81256..82050	+	264	107025418	-	Bcen_3060	-	AraC family transcriptional regulator
76	 67.42	0	82136..82399	-	87	107025419	-	Bcen_3061	-	hypothetical protein
77	 69.68	0	82682..84574	-	630	107025420	-	Bcen_3062	-	4-hydroxyphenylpyruvate dioxygenase
78	 65.13	0	84832..85287	+	151	107025421	-	Bcen_3063	-	3-dehydroquinate dehydratase
79	 70.53	0	85284..86138	+	284	107025422	-	Bcen_3064	-	shikimate 5-dehydrogenase
80	 66.22	0	86172..87515	+	447	107025423	-	Bcen_3065	-	major facilitator transporter
81	 70.00	0	87619..88728	-	369	107025424	-	Bcen_3066	-	2-aminoethylphosphonate--pyruvate transaminase
82	 64.65	0	88989..90080	+	363	107025425	-	Bcen_3067	-	ABC transporter periplasmic-binding protein
83	 70.92	0	90115..91218	+	367	107025426	-	Bcen_3068	-	ABC transporter related
84	 69.51	0	91238..92116	+	292	107025427	-	Bcen_3069	-	binding-protein-dependent transport systems inner membrane component
85	 71.66	+1	92106..92966	+	286	107025428	-	Bcen_3070	-	binding-protein-dependent transport systems inner membrane component
86	 68.12	0	92963..94273	+	436	107025429	-	Bcen_3071	-	phosphonoacetate hydrolase
87	 66.67	0	94273..95724	+	483	107025430	-	Bcen_3072	-	aldehyde dehydrogenase
88	 65.41	0	95729..96283	+	184	107025431	-	Bcen_3073	-	HD phosphohydrolase-like
89	 65.26	0	102612..104036	+	474	107025432	-	Bcen_3074	-	major facilitator transporter
90	 64.44	0	104290..105051	-	253	107025433	-	Bcen_3075	-	hypothetical protein
91	 66.29	0	105370..106962	-	530	107025434	-	Bcen_3076	-	phosphate transporter
92	 71.24	+1	107127..107717	-	196	107025435	-	Bcen_3077	-	phosphoglycerate mutase
93	 65.24	0	107940..108149	+	69	107025436	-	Bcen_3078	-	hypothetical protein
94	 69.02	0	108163..108885	+	240	107025437	-	Bcen_3079	-	hypothetical protein
95	 65.90	0	108909..109817	-	302	107025438	-	Bcen_3080	-	LysR family transcriptional regulator
96	 65.23	0	109945..112239	+	764	107025439	-	Bcen_3081	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
97	 67.57	0	112368..113693	-	441	107025440	-	Bcen_3082	-	major facilitator transporter
98	 66.48	0	113749..114813	-	354	107025441	-	Bcen_3083	-	agmatinase, putative
99	 68.52	0	114840..115757	+	305	107025442	-	Bcen_3084	-	LysR family transcriptional regulator
100	 68.39	0	115821..116285	-	154	107025443	-	Bcen_3085	-	AsnC family transcriptional regulator
66.90	MEAN

4.25	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.