IslandPath Analysis: Oenococcus oeni PSU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.95   STD DEV: 4.38
Oenococcus oeni PSU-1, complete genome - 1..1780517
1691 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.06	0	1..1353	+	450	116490127	-	OEOE_0001	-	chromosomal replication initiator protein DnaA
2	 37.69	0	1528..2652	+	374	116490128	-	OEOE_0002	-	DNA polymerase III, beta subunit
3	 37.39	0	2779..3000	+	73	116490129	-	OEOE_0003	-	S4-like RNA binding protein
4	 34.67	0	2987..4108	+	373	116490130	-	OEOE_0004	-	DNA replication and repair protein RecF
5	 43.08	+1	4101..6059	+	652	116490131	-	OEOE_0005	-	DNA gyrase subunit B
6	 42.52	+1	6068..8668	+	866	116490132	-	OEOE_0006	-	DNA gyrase subunit A
7	 35.12	0	8835..9002	+	55	116490133	-	OEOE_0007	-	hypothetical protein
8	 42.27	0	9053..9880	-	275	116490134	nadE	OEOE_0008	-	NAD synthetase
9	 43.49	+1	10111..11577	+	488	116490135	-	OEOE_0009	-	putative multicopper oxidase
10	 41.27	0	11696..12136	+	146	116490136	-	OEOE_0010	-	ribosomal protein S6
11	 43.01	+1	12145..12702	+	185	116490137	-	OEOE_0011	-	single-stranded DNA-binding protein
12	 44.86	+1	12725..13045	+	106	116490138	-	OEOE_0012	-	SSU ribosomal protein S18P
13	 40.33	0	13148..15205	+	685	116490139	-	OEOE_0013	-	signal protein
14	 37.28	0	15219..15674	+	151	116490140	-	OEOE_0014	-	50S ribosomal protein L9P
15	 40.12	0	15680..17137	+	485	116490141	-	OEOE_0015	-	primary replicative DNA helicase
16	 34.56	0	18512..19081	-	189	116490142	-	OEOE_0017	-	Zn-dependent protease
17	 34.86	0	19081..19668	-	195	116490143	-	OEOE_0018	-	hypothetical protein
18	 38.26	0	19958..20404	+	148	116490144	-	OEOE_0019	-	D-Tyr-tRNAtyr deacylase
19	 36.19	0	20423..21544	-	373	116490145	-	OEOE_0020	-	ABC-type sugar transport system, ATPase component
20	 38.23	0	21659..22945	+	428	116490146	-	OEOE_0021	-	ABC-type sugar transport system, periplasmic component
21	 34.85	0	22946..23800	+	284	116490147	-	OEOE_0022	-	ABC-type sugar transport system, permease component
22	 35.91	0	23800..24615	+	271	116490148	-	OEOE_0023	-	ABC-type maltose transport system, permease component
23	 37.05	0	24683..25999	-	438	116490149	-	OEOE_0024	-	cysteine aminopeptidase
24	 36.67	0	26132..27091	-	319	116490150	-	OEOE_0025	-	lactate dehydrogenase related enzyme
25	 34.68	0	27153..27524	-	123	116490151	-	OEOE_0026	-	double-stranded beta-helix-like protein
26	 30.86	-1	27659..27739	+	26	116490152	-	OEOE_0027	-	hypothetical protein
27	 38.64	0	27878..28216	+	112	116490153	-	OEOE_0028	-	double-stranded beta-helix-like protein
28	 36.17	0	28294..29670	+	458	116490154	-	OEOE_0029	-	fumarase
29	 31.02	-1	29772..30464	-	230	116490155	-	OEOE_0030	-	ABC-type multidrug transport system, ATPase component
30	 31.54	-1	30461..31018	-	185	116490156	-	OEOE_0031	-	hypothetical protein
31	 28.13	-2	31030..31548	-	172	116490157	-	OEOE_0032	-	hypothetical protein
32	 25.55	-2	31520..32893	-	457	116490158	-	OEOE_0033	-	hypothetical protein
33	 38.27	0	33016..33258	-	80	116490159	-	OEOE_0034	-	hypothetical protein
34	 30.51	-1	33512..33688	-	58	116490160	-	OEOE_0035	-	hypothetical protein
35	 40.53	0	33816..34760	-	314	116490161	-	OEOE_0036	-	aldo/keto reductase
36	 25.64	-2	34884..35000	-	38	116490162	-	OEOE_0037	-	hypothetical protein
37	 42.39	+1	35395..36288	+	297	116490163	murQ	OEOE_0038	-	N-acetylmuramic acid-6-phosphate etherase
38	 36.25	0	36314..37102	-	262	116490164	-	OEOE_0039	-	permease
39	 39.26	0	37454..39124	-	556	116490165	-	OEOE_0040	-	glucosidase
40	 38.91	0	39160..40575	-	471	116490166	-	OEOE_0041	-	major facilitator superfamily permease
41	 34.85	0	40764..41750	+	328	116490167	-	OEOE_0042	-	LacI family transcription regulator
42	 30.63	-1	41996..42328	-	110	116490168	-	OEOE_0043	-	ketosteroid isomerase-like protein
43	 35.10	0	42338..43129	-	263	116490169	-	OEOE_0044	-	D-alanine transfer protein, short-chain dehydrogenase
44	 33.88	0	43232..43777	+	181	116490170	-	OEOE_0045	-	transcriptional regulator
45	 27.27	-2	43766..43897	-	43	116490171	-	OEOE_0046	-	hypothetical protein
46	 37.31	0	43916..44494	-	192	116490172	-	OEOE_0047	-	XRE family transcriptional regulator
47	 39.06	0	44697..45656	-	319	116490173	-	OEOE_0048	-	dehydrogenase or related protein
48	 36.78	0	45914..47101	-	395	116490174	-	OEOE_0049	-	arabinose efflux permease
49	 38.91	0	47289..48311	+	340	116490175	-	OEOE_0050	-	dehydrogenase or related protein
50	 41.53	0	48403..49512	+	369	116490176	-	OEOE_0051	-	L-aminopeptidase/D-esterase
51	 32.94	-1	49967..50218	+	83	116490177	-	OEOE_0052	-	hypothetical protein
52	 32.62	-1	50342..50761	+	139	116490178	-	OEOE_0053	-	hypothetical protein
53	 28.76	-2	50821..51126	-	101	116490179	-	OEOE_0054	-	hypothetical protein
54	 37.08	0	51156..51395	-	79	116490180	-	OEOE_0055	-	hypothetical protein
55	 44.96	+1	51501..51758	-	85	116490181	-	OEOE_0056	-	hypothetical protein
56	 37.54	0	51840..52409	-	189	116490182	-	OEOE_0057	-	hypothetical protein
57	 35.63	0	52450..52623	-	57	116490183	-	OEOE_0058	-	hypothetical protein
58	 29.59	-1	52634..53194	-	186	116490184	-	OEOE_0059	-	hypothetical protein
59	 34.66	0	53547..54074	+	175	116490185	-	OEOE_0060	-	alpha/beta fold family hydrolase
60	 39.78	0	54505..54876	+	123	116490186	-	OEOE_0061	-	hypothetical protein
61	 32.75	-1	55123..56484	-	453	116490187	-	OEOE_0062	-	transcriptional regulator
62	 37.08	0	56802..57041	+	79	116490188	-	OEOE_0063	-	hypothetical protein
63	 26.72	-2	57439..58149	-	236	116490189	-	OEOE_0064	-	phytoene/squalene synthetase
64	 30.77	-1	59986..60102	+	38	116490190	-	OEOE_0066	-	hypothetical protein
65	 39.84	0	60419..61309	+	296	116490191	-	OEOE_0067	-	Short-chain alcohol dehydrogenase
66	 30.43	-1	61628..61972	+	114	116490192	-	OEOE_0068	-	hypothetical protein
67	 42.35	+1	62422..62676	+	84	116490193	-	OEOE_0069	-	hypothetical protein
68	 41.55	0	62925..63776	-	283	116490194	-	OEOE_0070	-	aldo/keto reductase related protein
69	 33.92	0	63867..64895	-	342	116490195	-	OEOE_0071	-	exopolysaccharide biosynthesis protein
70	 32.50	-1	66506..66625	+	39	116490196	-	OEOE_0073	-	hypothetical protein
71	 32.14	-1	67273..67692	-	139	116490197	-	OEOE_0074	-	hypothetical protein
72	 36.60	0	68016..69209	-	397	116490198	-	OEOE_0075	-	arabinose efflux permease
73	 31.62	-1	69494..70657	+	387	116490199	-	OEOE_0076	-	arabinose efflux permease
74	 38.31	0	70772..71554	+	260	116490200	-	OEOE_0077	-	3-oxoacyl-acyl carrier protein reductase
75	 37.02	0	71784..72542	-	252	116490201	-	OEOE_0078	-	short chain dehydrogenase
76	 30.30	-1	72839..73201	+	120	116490202	-	OEOE_0079	-	transcriptional regulator
77	 40.64	0	73470..74003	-	177	116490203	-	OEOE_0080	-	galactoside O-acetyltransferase
78	 42.75	+1	74025..74927	-	300	116490204	-	OEOE_0081	-	NADPH:quinone reductase or related Zn-dependent oxidoreductase
79	 36.00	0	75029..75553	-	174	116490205	-	OEOE_0082	-	MarR family transcriptional regulator
80	 28.37	-2	75683..75823	-	46	116490206	-	OEOE_0083	-	hypothetical protein
81	 30.61	-1	75918..76064	-	48	116490207	-	OEOE_0084	-	hypothetical protein
82	 30.26	-1	76428..76817	+	129	116490208	-	OEOE_0085	-	hypothetical protein
83	 33.33	-1	77947..78183	+	78	116490209	-	OEOE_0086	-	hypothetical protein
84	 51.28	+2	78883..79623	-	246	116490210	-	OEOE_0088	-	phosphoglycerate mutase family protein
85	 35.82	0	79943..80143	-	66	116490211	-	OEOE_0089	-	hypothetical protein
86	 33.96	0	82607..83566	+	319	116490212	-	OEOE_0092	-	Beta-lactamase class C related penicillin binding protein
87	 38.73	0	83933..86101	+	722	116490213	-	OEOE_0093	-	topoisomerase IA
88	 31.60	-1	86964..87194	+	76	116490214	-	OEOE_0095	-	glutaredoxin-like protein
89	 37.37	0	87341..87934	-	197	116490215	-	OEOE_0096	-	transcriptional regulator
90	 40.08	0	88042..89523	+	493	116490216	-	OEOE_0097	-	major facilitator superfamily permease
91	 35.17	0	90200..90580	+	126	116490217	-	OEOE_0098	-	hypothetical protein
92	 28.86	-2	91339..91875	-	178	116490218	-	OEOE_0099	-	XRE family transcriptional regulator
93	 26.61	-2	92470..93228	+	252	116490219	-	OEOE_0100	-	AraC family transcriptional regulator
94	 28.93	-2	96044..96724	+	226	116490220	-	OEOE_0103	-	calcineurin-like phosphoesterase
95	 45.10	+1	97963..98676	+	237	116490221	-	OEOE_0105	-	DNA-binding response regulator
96	 39.80	0	98698..100599	+	633	116490222	-	OEOE_0106	-	PAS/PAC sensor signal transduction histidine kinase
97	 43.04	+1	100664..101941	+	425	116490223	-	OEOE_0107	-	trypsin-like serine protease
98	 36.65	0	102093..102575	+	160	116490224	-	OEOE_0108	-	hypothetical protein
99	 34.38	0	102596..102976	-	126	116490225	-	OEOE_0109	-	hypothetical protein
100	 40.11	0	103041..103217	-	58	116490226	-	OEOE_0110	-	hypothetical protein
37.95	MEAN

4.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.