IslandPath Analysis: Pseudomonas putida GB-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.19   STD DEV: 4.01
Pseudomonas putida GB-1, complete genome - 1..6078430
5409 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.27	0	4..408	-	134	167031022	-	PputGB1_0001	-	ribonuclease P
2	 58.52	0	422..556	-	44	167031023	-	PputGB1_0002	-	50S ribosomal protein L34
3	 59.82	0	1152..2684	+	510	167031024	-	PputGB1_0003	-	chromosomal replication initiation protein
4	 58.97	0	2725..3828	+	367	167031025	-	PputGB1_0004	-	DNA polymerase III subunit beta
5	 58.42	0	3844..4947	+	367	167031026	-	PputGB1_0005	-	recombination protein F
6	 57.66	-1	4952..7372	+	806	167031027	-	PputGB1_0006	-	DNA gyrase subunit B
7	 55.71	-1	8209..8847	+	212	167031028	-	PputGB1_0007	-	hypothetical protein
8	 53.50	-2	8828..10786	+	652	167031029	-	PputGB1_0008	-	integrase catalytic region
9	 52.40	-2	10783..11742	+	319	167031030	-	PputGB1_0009	-	AAA ATPase
10	 54.98	-1	11818..13734	+	638	167031031	-	PputGB1_0010	-	hypothetical protein
11	 54.44	-1	13791..14150	+	119	167031032	-	PputGB1_0011	-	hypothetical protein
12	 47.75	-2	14522..14854	+	110	167031033	-	PputGB1_0012	-	hypothetical protein
13	 56.80	-1	14952..15407	-	151	167031034	-	PputGB1_0013	-	hypothetical protein
14	 55.13	-1	15397..16176	-	259	167031035	-	PputGB1_0014	-	hypothetical protein
15	 58.51	0	16186..17301	-	371	167031036	-	PputGB1_0015	-	copper resistance B precursor
16	 53.40	-2	17291..17614	-	107	167031037	-	PputGB1_0016	-	hypothetical protein
17	 57.94	-1	17629..19587	-	652	167031038	-	PputGB1_0017	-	CopA family copper resistance protein
18	 57.97	-1	19770..19976	-	68	167031039	-	PputGB1_0018	-	hypothetical protein
19	 56.19	-1	20143..20820	+	225	167031040	-	PputGB1_0019	-	two component heavy metal response transcriptional regulator
20	 55.72	-1	20820..22226	+	468	167031041	-	PputGB1_0020	-	heavy metal sensor signal transduction histidine kinase
21	 57.18	-1	22263..22610	+	115	167031042	-	PputGB1_0021	-	hypothetical protein
22	 59.09	0	22697..23950	+	417	167031043	-	PputGB1_0022	-	outer membrane efflux protein
23	 59.78	0	23947..25413	+	488	167031044	-	PputGB1_0023	-	RND family efflux transporter MFP subunit
24	 58.28	0	25410..28568	+	1052	167031045	-	PputGB1_0024	-	CzcA family heavy metal efflux protein
25	 56.61	-1	28565..28912	+	115	167031046	-	PputGB1_0025	-	hypothetical protein
26	 55.61	-1	29327..29986	-	219	167031047	-	PputGB1_0026	-	isoprenylcysteine carboxyl methyltransferase
27	 56.16	-1	29983..30258	-	91	167031048	-	PputGB1_0027	-	hypothetical protein
28	 57.02	-1	30284..30739	-	151	167031049	-	PputGB1_0028	-	hypothetical protein
29	 59.04	0	30878..31900	-	340	167031050	-	PputGB1_0029	-	YVTN beta-propeller repeat-containing protein
30	 56.25	-1	32166..32357	-	63	167031051	-	PputGB1_0030	-	heavy metal transport/detoxification protein
31	 60.31	0	32704..35220	-	838	167031052	-	PputGB1_0031	-	copper-translocating P-type ATPase
32	 64.25	0	35491..35697	+	68	167031053	-	PputGB1_0032	-	putative transcriptional regulator
33	 54.55	-1	36052..37248	+	398	167031054	-	PputGB1_0033	-	hypothetical protein
34	 51.95	-2	37432..37764	-	110	167031055	-	PputGB1_0034	-	hypothetical protein
35	 54.62	-1	38080..38328	+	82	167031056	-	PputGB1_0035	-	hypothetical protein
36	 53.25	-2	38639..39562	+	307	167031057	-	PputGB1_0036	-	hypothetical protein
37	 52.73	-2	39747..39911	-	54	167031058	-	PputGB1_0037	-	hypothetical protein
38	 54.26	-1	40357..40485	-	42	167031059	-	PputGB1_0038	-	hypothetical protein
39	 55.18	-1	40608..42305	-	565	167031060	-	PputGB1_0039	-	hypothetical protein
40	 58.06	-1	43189..44094	+	301	167031061	-	PputGB1_0040	-	cation diffusion facilitator family transporter
41	 54.42	-1	44252..44602	+	116	167031062	-	PputGB1_0041	-	hypothetical protein
42	 48.32	-2	44635..44961	-	108	167031063	-	PputGB1_0042	-	hypothetical protein
43	 54.81	-1	45651..46325	+	224	167031064	-	PputGB1_0043	-	two component heavy metal response transcriptional regulator
44	 56.94	-1	46322..47740	+	472	167031065	-	PputGB1_0044	-	heavy metal sensor signal transduction histidine kinase
45	 58.67	0	47798..48385	-	195	167031066	-	PputGB1_0045	-	hypothetical protein
46	 48.65	-2	48652..48873	+	73	167031067	-	PputGB1_0046	-	hypothetical protein
47	 58.42	0	48956..50410	-	484	167031068	-	PputGB1_0047	-	glycosyl transferase family protein
48	 57.32	-1	50404..51387	-	327	167031069	-	PputGB1_0048	-	ribonuclease III
49	 49.52	-2	51353..51772	-	139	167031070	-	PputGB1_0049	-	GtrA family protein
50	 51.70	-2	52030..52998	+	322	167031071	-	PputGB1_0050	-	LysR family transcriptional regulator
51	 57.72	-1	53209..54516	+	435	167031072	-	PputGB1_0051	-	phosphate-selective porin O and P
52	 56.30	-1	54536..54670	+	44	167031073	-	PputGB1_0052	-	hypothetical protein
53	 57.70	-1	54815..55840	+	341	167031074	-	PputGB1_0053	-	hypothetical protein
54	 55.11	-1	55968..56192	+	74	167031075	-	PputGB1_0054	-	hypothetical protein
55	 58.56	0	56285..58282	-	665	167031076	-	PputGB1_0055	-	heavy metal translocating P-type ATPase
56	 49.69	-2	58485..58808	-	107	167031077	-	PputGB1_0056	-	hypothetical protein
57	 57.97	-1	58971..62132	-	1053	167031078	-	PputGB1_0057	-	CzcA family heavy metal efflux protein
58	 59.95	0	62157..63407	-	416	167031079	-	PputGB1_0058	-	RND family efflux transporter MFP subunit
59	 60.14	0	63476..64747	-	423	167031080	-	PputGB1_0059	-	outer membrane efflux protein
60	 56.25	-1	65151..66494	+	447	167031081	-	PputGB1_0060	-	outer membrane porin
61	 51.70	-2	66984..67658	+	224	167031082	-	PputGB1_0061	-	two component heavy metal response transcriptional regulator
62	 48.46	-2	67776..68099	+	107	167031083	-	PputGB1_0062	-	hypothetical protein
63	 45.64	-2	68201..68728	-	175	167031084	-	PputGB1_0063	-	hypothetical protein
64	 53.85	-2	68918..70345	-	475	167031085	-	PputGB1_0064	-	hypothetical protein
65	 51.74	-2	70397..70798	-	133	167031086	-	PputGB1_0065	-	hypothetical protein
66	 59.80	0	71537..71944	-	135	167031087	-	PputGB1_0066	-	hypothetical protein
67	 62.49	0	72074..73366	-	430	167031088	-	PputGB1_0067	-	putative sigma54 specific transcriptional regulator
68	 61.13	0	73589..74473	+	294	167031089	-	PputGB1_0068	-	beta-lactamase domain-containing protein
69	 62.41	0	74514..75782	+	422	167031090	-	PputGB1_0069	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
70	 65.08	0	75779..76597	+	272	167031091	-	PputGB1_0070	-	hypothetical protein
71	 62.95	0	76586..77473	-	295	167031092	-	PputGB1_0071	-	LysR family transcriptional regulator
72	 62.84	0	77652..79298	+	548	167031093	-	PputGB1_0072	-	glucose-methanol-choline oxidoreductase
73	 59.51	0	79396..81015	+	539	167031094	-	PputGB1_0073	-	general substrate transporter
74	 60.56	0	81193..81978	-	261	167031095	-	PputGB1_0074	-	phospholipid/glycerol acyltransferase
75	 62.69	0	82025..82552	-	175	167031096	-	PputGB1_0075	-	D,D-heptose 1,7-bisphosphate phosphatase
76	 64.67	0	82556..84607	-	683	167031097	-	PputGB1_0076	-	glycyl-tRNA synthetase subunit beta
77	 61.60	0	84604..85551	-	315	167031098	-	PputGB1_0077	-	glycyl-tRNA synthetase subunit alpha
78	 61.23	0	85635..86186	+	183	167031099	-	PputGB1_0078	-	DNA-3-methyladenine glycosylase I
79	 63.40	0	86228..87115	+	295	167031100	-	PputGB1_0079	-	lipid A biosynthesis lauroyl acyltransferase
80	 60.52	0	87233..87541	-	102	167031101	-	PputGB1_0080	-	tetratricopeptide domain-containing protein
81	 62.74	0	87553..88926	-	457	167031102	-	PputGB1_0081	-	potassium transporter peripheral membrane component
82	 68.42	+1	88950..90260	-	436	167031103	-	PputGB1_0082	-	sun protein
83	 67.42	+1	90257..91189	-	310	167031104	-	PputGB1_0083	-	methionyl-tRNA formyltransferase
84	 61.14	0	91250..91756	-	168	167031105	-	PputGB1_0084	-	peptide deformylase
85	 65.48	0	91963..93060	+	365	167031106	-	PputGB1_0085	-	DNA protecting protein DprA
86	 64.16	0	93103..93660	+	185	167031107	-	PputGB1_0086	-	SUA5/yciO/yrdC domain-containing protein
87	 60.46	0	94569..94874	+	101	167031108	-	PputGB1_0087	-	hypothetical protein
88	 64.11	0	95002..95979	-	325	167031109	-	PputGB1_0088	-	alcohol dehydrogenase
89	 64.91	0	96114..97025	+	303	167031110	-	PputGB1_0089	-	coproporphyrinogen III oxidase
90	 64.48	0	97051..97875	+	274	167031111	-	PputGB1_0090	-	shikimate 5-dehydrogenase
91	 64.69	0	98019..99584	-	521	167031112	-	PputGB1_0091	-	sulphate transporter
92	 59.42	0	99712..100635	-	307	167031113	-	PputGB1_0092	-	choline ABC transporter, periplasmic binding protein
93	 63.83	0	100650..102167	-	505	167031114	-	PputGB1_0093	-	choline-sulfatase
94	 63.44	0	102276..103175	+	299	167031115	-	PputGB1_0094	-	LysR family transcriptional regulator
95	 64.50	0	103291..103845	-	184	167031116	-	PputGB1_0095	-	hypothetical protein
96	 64.86	0	103898..104230	+	110	167031117	-	PputGB1_0096	-	DOPA 45-dioxygenase
97	 66.67	+1	104350..105159	-	269	167031118	-	PputGB1_0097	-	tryptophan synthase subunit alpha
98	 64.04	0	105156..106373	-	405	167031119	-	PputGB1_0098	-	tryptophan synthase subunit beta
99	 66.56	+1	106484..107380	+	298	167031120	-	PputGB1_0099	-	LysR family transcriptional regulator
100	 58.95	0	107377..107700	-	107	167031121	-	PputGB1_0100	-	protein of unknown function DUF883 ElaB
62.19	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.