IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis JB197



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.86   STD DEV: 3.40
Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1, complete sequence - 1..3576473
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.66	0	1..1908	-	635	116329800	gidA	LBJ_0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 39.50	0	2049..2972	+	307	116329801	ilvE	LBJ_0002	-	branched-chain amino acid aminotransferase
3	 37.91	0	2979..3917	+	312	116329802	dnaX-1	LBJ_0003	-	DNA polymerase III gamma and tau subunits
4	 36.00	-1	4254..5567	+	437	116329803	dnaA	LBJ_0004	-	chromosomal replication initiator protein
5	 36.90	-1	6679..7800	+	373	116329804	dnaN	LBJ_0005	-	DNA-directed DNA polymerase, beta subunit
6	 36.25	-1	7800..8897	+	365	116329805	recF	LBJ_0006	-	recombinational DNA repair ATPase
7	 34.62	-1	8894..9358	+	154	116329806	-	LBJ_0007	-	hypothetical protein
8	 39.62	0	9424..11349	+	641	116329807	gyrB	LBJ_0008	-	DNA gyrase subunit B
9	 40.18	0	11368..13866	+	832	116329808	gyrA	LBJ_0009	-	DNA gyrase subunit A
10	 39.08	0	13863..14819	+	318	116329809	-	LBJ_0010	-	tRNA-dihydrouridine synthase
11	 43.97	0	15702..16265	-	187	116329810	lipL21	LBJ_0012	-	LipL21 lipoprotein
12	 37.51	0	16404..17960	+	518	116329811	-	LBJ_0013	-	hypothetical protein
13	 36.80	-1	17983..18876	+	297	116329812	-	LBJ_0014	-	transcriptional regulator
14	 37.01	-1	18818..19906	-	362	116329813	holA	LBJ_0015	-	DNA-directed DNA polymerase, delta subunit
15	 44.91	+1	19993..20208	+	71	116329814	-	LBJ_0016	-	hypothetical protein
16	 38.90	0	20650..21744	-	364	116329815	-	LBJ_0017	-	transposase IS1533
17	 34.23	-1	22063..24297	-	744	116329816	-	LBJ_0018	-	adenylate or guanylate cyclase
18	 42.80	0	24363..25376	-	337	116329817	fliG	LBJ_0019	-	flagellar motor switch protein G
19	 36.13	-1	26138..26494	+	118	116329818	-	LBJ_0020	-	glutaredoxin family protein
20	 37.80	0	30093..31346	-	417	116329819	serS	LBJ_0024	-	seryl-tRNA synthetase
21	 38.15	0	31339..32148	-	269	116329820	tatD	LBJ_0025	-	Mg-dependent DNase
22	 37.84	0	32269..33288	+	339	116329821	-	LBJ_0026	-	metalloendopeptidase
23	 43.10	0	33289..33636	+	115	116329822	-	LBJ_0027	-	hypothetical protein
24	 37.21	-1	33633..34148	+	171	116329823	-	LBJ_0028	-	hypothetical protein
25	 40.41	0	37836..38711	-	291	116329824	-	LBJ_0029	-	ParB-like protein
26	 38.06	0	38714..39475	-	253	116329825	-	LBJ_0030	-	ParA-like protein
27	 34.51	-1	39453..40217	-	254	116329826	gidB	LBJ_0031	-	glucose inhibited division protein B
28	 36.30	-1	42572..43279	-	235	116329827	aroD	LBJ_0033	-	3-dehydroquinate dehydratase
29	 40.45	0	43283..44251	-	322	116329828	-	LBJ_0034	-	sugar phosphate isomerase
30	 34.44	-1	44235..44774	-	179	116329829	-	LBJ_0035	-	transcription antiterminator
31	 34.17	-1	44758..45237	-	159	116329830	-	LBJ_0036	-	hypothetical protein
32	 38.99	0	46142..47839	+	565	116329831	-	LBJ_0037	-	methyl-accepting chemotaxis protein
33	 39.75	0	47970..48842	+	290	116329832	-	LBJ_0038	-	hypothetical protein
34	 41.43	0	48839..49777	+	312	116329833	-	LBJ_0039	-	nucleoside-diphosphate-sugar epimerase
35	 41.54	0	49855..51024	+	389	116329834	pntA	LBJ_0040	-	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
36	 39.48	0	50983..51519	-	178	116329835	-	LBJ_0041	-	acid phosphatase
37	 40.23	0	51516..52835	-	439	116329836	hisS	LBJ_0042	-	histidyl-tRNA synthetase
38	 39.43	0	52842..53990	-	382	116329837	-	LBJ_0043	-	hypothetical protein
39	 39.61	0	54000..56054	-	684	116329838	-	LBJ_0044	-	OmpA-family protein
40	 39.74	0	56149..56991	+	280	116329839	folP	LBJ_0045	-	dihydropteroate synthase
41	 43.52	0	57200..57523	+	107	116329840	-	LBJ_0046	-	hypothetical protein
42	 47.80	+2	57533..58417	+	294	116329841	-	LBJ_0047	-	RNA polymerase sigma subunit
43	 35.68	-1	60710..61900	-	396	116329842	-	LBJ_0050	-	TPR repeat-containing protein
44	 40.59	0	61875..62783	-	302	116329843	-	LBJ_0051	-	TPR repeat-containing protein
45	 40.57	0	62889..63800	+	303	116329844	-	LBJ_0052	-	RlpA-like lipoprotein
46	 41.98	0	64514..65230	-	238	116329845	cysE	LBJ_0053	-	Serine O-acetyltransferase
47	 39.48	0	65516..66442	+	308	116329846	-	LBJ_0054	-	M50 family peptidase
48	 39.62	0	66406..67821	+	471	116329847	-	LBJ_0055	-	hypothetical protein
49	 38.12	0	67896..69107	-	403	116329848	-	LBJ_0056	-	Na+-driven multidrug efflux pump
50	 39.88	0	69222..70505	-	427	116329849	gltP	LBJ_0057	-	proton glutamate symport protein
51	 37.67	0	70646..73828	+	1060	116329850	-	LBJ_0058	-	Serine phosphatase RsbU, regulator of sigma subunit
52	 33.67	-2	73821..74711	+	296	116329851	-	LBJ_0059	-	hypothetical protein
53	 36.05	-1	75046..78141	+	1031	116329852	-	LBJ_0060	-	hypothetical protein
54	 42.46	0	78235..78705	-	156	116329853	-	LBJ_0061	-	hypothetical protein
55	 39.46	0	78779..79300	-	173	116329854	dcd	LBJ_0062	-	deoxycytidine triphosphate deaminase
56	 41.63	0	79301..80083	-	260	116329855	-	LBJ_0063	-	enoyl-CoA hydratase
57	 38.87	0	80116..80910	+	264	116329856	-	LBJ_0064	-	hypothetical protein
58	 40.95	0	81025..81234	+	69	116329857	-	LBJ_0065	-	hypothetical protein
59	 38.48	0	81324..81692	-	122	116329858	-	LBJ_0066	-	dioxygenase superfamily protein
60	 34.53	-1	81803..82891	-	362	116329859	-	LBJ_0067	-	hypothetical protein
61	 39.56	0	82888..84525	-	545	116329860	-	LBJ_0068	-	amino oxidase
62	 33.73	-2	84619..85371	+	250	116329861	-	LBJ_0069	-	hydrolase
63	 38.38	0	85360..86211	-	283	116329862	-	LBJ_0070	-	methylase/methyltransferase
64	 42.55	0	86360..87205	+	281	116329863	dapF	LBJ_0071	-	diaminopimelate epimerase
65	 40.43	0	87212..87916	-	234	116329864	plsC	LBJ_0072	-	1-acylglycerol-3-phosphate O-acyltransferase
66	 39.65	0	87951..88235	-	94	116329865	-	LBJ_0073	-	hypothetical protein
67	 33.33	-2	88771..89118	+	115	116329866	-	LBJ_0074	-	hypothetical protein
68	 34.19	-1	89217..89798	-	193	116329867	-	LBJ_0075	-	histidine kinase-like ATPase
69	 36.28	-1	90928..92184	-	418	116329868	-	LBJ_0077	-	transposase ISLbp1
70	 39.00	0	92986..94080	+	364	116329869	-	LBJ_0078	-	transposase IS1533
71	 35.04	-1	94668..95078	-	136	116329870	-	LBJ_0080	-	hypothetical protein
72	 38.26	0	95032..95478	-	148	116329871	-	LBJ_0081	-	hypothetical protein
73	 37.24	-1	95797..97050	+	417	116329872	trmA-1	LBJ_0084	-	tRNA (uracil-5-)-methyltransferase
74	 39.45	0	99180..100274	+	364	116329873	-	LBJ_0085	-	transposase IS1533
75	 40.16	0	100908..102959	-	683	116329874	-	LBJ_0086	-	long-chain-fatty-acid--CoA ligase
76	 39.39	0	103480..104139	-	219	116329875	aat	LBJ_0088	-	leucyl/phenylalanyl-tRNA--protein transferase
77	 36.94	-1	104791..106566	-	591	116329876	-	LBJ_0090	-	Para-aminobenzoate synthase
78	 37.92	0	106588..108768	+	726	116329877	-	LBJ_0091	-	sensor histidine kinase and response regulator protein
79	 39.16	0	109385..110878	-	497	116329878	-	LBJ_0092	-	Cys/Met metabolism PLP-dependent protein
80	 42.44	0	110943..112007	-	354	116329879	prfA	LBJ_0093	-	peptide chain release factor 1
81	 40.26	0	112048..112653	+	201	116329880	-	LBJ_0094	-	hypothetical protein
82	 37.90	0	112898..114058	+	386	116329881	-	LBJ_0095	-	hypothetical protein
83	 37.05	-1	114691..115740	-	349	116329882	-	LBJ_0096	-	hypothetical protein
84	 41.61	0	115746..116180	-	144	116329883	-	LBJ_0097	-	hypothetical protein
85	 39.04	0	116624..117289	-	221	116329884	-	LBJ_0098	-	rhomboid family protein
86	 37.98	0	117286..117909	-	207	116329885	-	LBJ_0099	-	AcrR family transcriptional regulator
87	 40.58	0	118918..119538	+	206	116329886	hisB	LBJ_0101	-	imidazoleglycerol-phosphate dehydratase or histidinol-phosphatase
88	 37.12	-1	119535..120167	+	210	116329887	hisH-1	LBJ_0102	-	glutamine amidotransferase
89	 40.08	0	120164..120889	+	241	116329888	hisA	LBJ_0103	-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase
90	 39.80	0	120979..122199	+	406	116329889	-	LBJ_0104	-	protein-disulfide isomerase
91	 35.61	-1	122214..122741	+	175	116329890	-	LBJ_0105	-	hypothetical protein
92	 37.18	-1	123495..125312	+	605	116329891	-	LBJ_0106	-	hypothetical protein
93	 36.29	-1	125585..126463	-	292	116329892	-	LBJ_0107	-	Zn-dependent hydrolase
94	 37.26	-1	126460..127503	-	347	116329893	-	LBJ_0108	-	lipoprotein
95	 42.05	0	127513..129060	-	515	116329894	-	LBJ_0109	-	hypothetical protein
96	 36.97	-1	129112..129798	-	228	116329895	-	LBJ_0110	-	hypothetical protein
97	 40.74	0	129862..131130	-	422	116329896	-	LBJ_0111	-	hypothetical protein
98	 39.00	0	132328..133422	-	364	116329897	-	LBJ_0112	-	transposase IS1533
99	 39.36	0	135126..135938	-	270	116329898	thiD	LBJ_0114	-	phosphomethylpyrimidine kinase
100	 43.38	0	136405..136812	-	135	116329899	-	LBJ_0115	-	methylated DNA-protein cysteine methyltransferase
40.86	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.