IslandPath Analysis: Acinetobacter baumannii ATCC 17978



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.16   STD DEV: 3.49
Acinetobacter baumannii ATCC 17978, complete genome - 1..3976747
3352 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.10	0	296..1492	+	398	126640116	-	A1S_0001	-	DNA replication initiator protein
2	 38.24	0	1821..2738	+	305	126640117	-	A1S_0002	-	DNA polymerase III
3	 39.62	0	2993..3835	+	280	126640118	-	A1S_0003	-	DNA replication recombination and repair protein
4	 41.66	0	4002..6356	+	784	126640119	-	A1S_0004	-	DNA gyrase
5	 36.96	0	6484..6786	+	100	126640120	-	A1S_0005	-	putative cytochrome b precursor
6	 38.16	0	6872..7306	-	144	126640121	-	A1S_0006	-	putative DedA family protein
7	 42.38	0	7680..9548	-	622	126640122	-	A1S_0007	-	putative transport protein
8	 40.32	0	9985..10872	+	295	126640123	-	A1S_0008	-	putative RND type efflux pump
9	 40.53	0	11149..12135	+	328	126640124	-	A1S_0009	-	putative RND type efflux pump
10	 41.85	0	12508..13482	+	324	126640125	-	A1S_0010	-	RND type efflux pump
11	 42.86	0	13691..13942	+	83	126640126	-	A1S_0011	-	hypothetical protein
12	 35.57	-1	13998..14756	-	252	126640127	-	A1S_0012	-	hydrolase
13	 41.69	0	14971..15963	-	330	126640128	anmK	A1S_0013	-	anhydro-N-acetylmuramic acid kinase
14	 39.79	0	16418..17392	+	324	126640129	-	A1S_0014	-	tyrosyl-tRNA synthetase
15	 37.01	0	20391..21806	-	471	126640130	-	A1S_0015	-	hypothetical protein
16	 28.94	-2	22222..23154	+	310	126640131	-	A1S_0016	-	site-specific tyrosine recombinase
17	 36.10	-1	25014..25556	-	180	126640132	-	A1S_0017	-	putative flavoprotein
18	 37.45	0	25674..26183	-	169	126640133	-	A1S_0018	-	FKBP-type peptidyl-prolyl cis-trans isomerase
19	 37.81	0	26176..26622	-	148	126640134	-	A1S_0019	-	Signal peptidase II
20	 42.16	0	26699..29461	-	920	126640135	ileS	A1S_0020	-	isoleucyl-tRNA synthetase
21	 41.19	0	30885..31940	+	351	126640136	-	A1S_0023	-	putative malic acid transport protein
22	 39.15	0	32021..32587	+	188	126640137	-	A1S_0024	-	putative MTA/SAH nucleosidase
23	 39.39	0	32622..33116	-	164	126640138	-	A1S_0025	-	putative transcriptional repressor
24	 40.80	0	33503..34225	-	240	126640139	-	A1S_0026	-	alkanesulfonate transport protein
25	 42.27	0	34317..34853	-	178	126640140	-	A1S_0027	-	alkanesulfonate transport protein
26	 45.91	+1	35111..36199	-	362	126640141	-	A1S_0028	-	alkanesulfonate monooxygenase
27	 44.87	+1	36313..37179	-	288	126640142	-	A1S_0029	-	ABC-type nitrate/sulfonate/bicarbonate transport systems
28	 41.75	0	37368..38270	-	300	126640143	-	A1S_0030	-	alkanesulfonate transport protein
29	 40.88	0	38670..39914	-	414	126640144	-	A1S_0031	-	N-acetylglutamate synthase
30	 39.58	0	40146..40433	-	95	126640145	-	A1S_0032	-	putative signal peptide
31	 45.05	+1	40689..41132	-	147	126640146	-	A1S_0033	-	putative signal peptide
32	 42.72	0	41317..41934	-	205	126640147	-	A1S_0034	-	short chain dehydrogenase
33	 42.63	0	42129..42752	-	207	126640148	-	A1S_0035	-	putative phosphoglycolate phosphatase 2 (PGP 2)
34	 42.50	0	42827..43339	-	170	126640149	-	A1S_0036	-	3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase
35	 40.86	0	43779..44336	+	185	126640150	-	A1S_0037	-	alkali-inducible disulfide interchange protein
36	 33.33	-1	44414..44953	-	179	126640151	-	A1S_0038	-	putative transcriptional regulator
37	 39.20	0	45198..45674	-	158	126640152	-	A1S_0039	-	TetR family transcriptional regulator
38	 42.91	0	46148..47035	+	295	126640153	-	A1S_0040	-	putative oxidoreductase
39	 38.66	0	47165..48235	+	356	126640154	-	A1S_0041	-	putative linoleoyl-CoA desaturase
40	 41.90	0	48560..49084	+	174	126640155	-	A1S_0042	-	ribonuclease PH
41	 42.58	0	49608..51542	+	644	126640156	-	A1S_0043	-	hypothetical protein
42	 43.43	0	52111..52863	-	250	126640157	-	A1S_0044	-	nicotinate-nucleotide pyrophosphorylase
43	 39.78	0	53233..53697	+	154	126640158	-	A1S_0045	-	N-acetyl-anhydromuranmyl-L-alanine amidase
44	 41.03	0	54061..55320	+	419	126640159	-	A1S_0046	-	MviN family virulence factor
45	 38.02	0	55366..55941	-	191	126640160	-	A1S_0047	-	FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase)
46	 41.90	0	56112..56846	-	244	126640161	-	A1S_0048	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
47	 36.90	0	57027..58991	-	654	126640162	-	A1S_0049	-	protein tyrosine kinase
48	 40.53	0	59233..59607	-	124	126640163	-	A1S_0050	-	putative protein tyrosine phosphatase
49	 39.33	0	59666..60766	-	366	126640164	-	A1S_0051	-	putative outer membrane protein
50	 40.08	0	61385..62422	+	345	126640165	-	A1S_0052	-	WecC protein
51	 36.36	-1	62546..63403	+	285	126640166	-	A1S_0053	-	MviM protein
52	 42.83	0	63400..63978	+	192	126640167	-	A1S_0054	-	WbbJ protein
53	 38.91	0	64181..65059	+	292	126640168	-	A1S_0055	-	WecE protein
54	 32.95	-2	65130..66446	+	438	126640169	-	A1S_0056	-	O-antigen translocase
55	 33.33	-1	66590..67009	+	139	126640170	-	A1S_0057	-	capsular polysaccharide synthesis enzyme
56	 26.93	-2	67429..68349	+	306	126640171	-	A1S_0058	-	glycosyltransferase
57	 31.24	-2	70737..71693	+	318	126640172	-	A1S_0059	-	putative glycosyltransferase
58	 31.64	-2	71760..72527	+	255	126640173	-	A1S_0060	-	hypothetical protein
59	 38.25	0	72693..73160	+	155	126640174	-	A1S_0061	-	putative UDP-galactose phosphate transferase
60	 38.97	0	73263..74060	+	265	126640175	-	A1S_0062	-	putative UTP-glucose-1-phosphate uridylyltransferase
61	 40.86	0	74761..75438	+	225	126640176	-	A1S_0063	-	putative UDP-glucose 6-dehydrogenase
62	 38.21	0	75732..77105	+	457	126640177	-	A1S_0064	-	putative phosphoglucose isomerase
63	 40.14	0	77263..78114	+	283	126640178	-	A1S_0065	-	putative UDP-glucose 4-epimerase
64	 40.62	0	78158..79309	-	383	126640179	-	A1S_0066	-	hypothetical protein
65	 42.45	0	79903..81570	+	555	126640180	-	A1S_0067	-	L-lactate permease
66	 45.83	+1	81647..82342	+	231	126640181	-	A1S_0068	-	DNA-binding transcriptional repressor LldR
67	 46.87	+1	82501..83490	+	329	126640182	-	A1S_0069	-	L-lactate dehydrogenase FMN linked
68	 43.22	0	83992..85488	+	498	126640183	-	A1S_0070	-	D-lactate dehydrogenase
69	 42.55	0	85537..86751	-	404	126640184	-	A1S_0071	-	aromatic amino acid aminotransferase
70	 42.18	0	87492..87977	+	161	126640185	-	A1S_0072	-	GntR family transcriptional regulator
71	 44.89	+1	88033..88854	+	273	126640186	prpB	A1S_0073	-	2-methylisocitrate lyase
72	 47.41	+2	90283..92889	+	868	162286758	-	A1S_0076	-	aconitate hydratase
73	 30.74	-2	92999..95467	+	822	126640188	-	A1S_0077	-	hypothetical protein
74	 49.78	+2	96053..96277	+	74	126640189	-	A1S_0078	-	hypothetical protein
75	 35.00	-1	97117..97536	+	139	126640190	-	A1S_0079	-	hypothetical protein
76	 46.80	+1	98880..100082	+	400	126640191	-	A1S_0080	-	beta-ketoacyl-ACP synthase I
77	 43.30	0	100092..100643	-	183	126640192	-	A1S_0081	-	putative signal peptide
78	 32.66	-2	103903..104649	+	248	126640193	-	A1S_0086	-	hypothetical protein
79	 39.74	0	106539..107147	-	202	126640194	-	A1S_0087	-	Short-chain dehydrogenase/reductase SDR
80	 37.46	0	108043..108744	+	233	126640195	-	A1S_0088	-	hypothetical protein
81	 41.44	0	108966..109520	+	184	126640196	-	A1S_0089	-	dual specificity pseudouridine synthase
82	 38.05	0	109688..110005	+	105	126640197	-	A1S_0090	-	hypothetical protein
83	 39.90	0	110034..110414	+	126	126640198	-	A1S_0091	-	hypothetical protein
84	 42.49	0	110459..112348	-	629	126640199	-	A1S_0092	-	putative ferric siderophore receptor protein
85	 39.28	0	112703..113779	+	358	126640200	-	A1S_0093	-	hypothetical protein
86	 40.88	0	113820..114137	-	105	126640201	-	A1S_0094	-	lrp regulon transcriptional regulator (AsnC family)
87	 43.10	0	114625..115689	+	354	126640202	-	A1S_0095	-	D-amino acid dehydrogenase small subunit
88	 44.28	+1	115782..116813	+	343	126640203	-	A1S_0096	-	alanine racemase 2 PLP-binding, catabolic
89	 41.11	0	116824..117183	+	119	126640204	-	A1S_0097	-	hypothetical protein
90	 43.69	+1	117462..118784	+	440	126640205	-	A1S_0098	-	D-serine/D-alanine/glycine transport protein
91	 41.78	0	119272..120585	+	437	126640206	-	A1S_0099	-	D-serine/D-alanine/glycine transport protein
92	 45.35	+1	120643..121524	-	293	126640207	-	A1S_0100	-	LysR family transcriptional regulator
93	 45.25	+1	123404..124108	+	234	126640208	-	A1S_0103	-	3-hydroxyisobutyrate dehydrogenase
94	 45.48	+1	124424..125839	+	471	126640209	-	A1S_0104	-	putative acetyl-CoA synthetase/AMP-(fatty) acid ligase
95	 45.51	+1	125977..126978	+	333	126640210	-	A1S_0105	-	putative acyl-CoA dehydrogenase
96	 42.33	0	127207..127773	+	188	126640211	-	A1S_0106	-	putative enoyl-CoA hydratase/isomerase
97	 42.37	0	127882..128811	+	309	126640212	-	A1S_0107	-	putative enoyl-CoA hydratase/isomerase family protein
98	 43.61	0	129000..130283	+	427	126640213	-	A1S_0108	-	major facilitator superfamily metabolite/H(+) symporter
99	 44.36	+1	130376..130765	-	129	126640214	-	A1S_0109	-	homoserine lactone synthase
100	 36.89	0	131006..131371	-	121	126640215	-	A1S_0110	-	hypothetical protein
40.16	MEAN

3.49	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.