IslandPath Analysis: Methanosphaera stadtmanae DSM 3091



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.00   STD DEV: 3.63
Methanosphaera stadtmanae DSM 3091, complete genome - 1..1767403
1534 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.14	0	718..1872	+	384	84488832	cdc6-1	Msp_0001	-	cell division control protein 6-like 1
2	 27.73	0	1926..2246	-	106	84488833	-	Msp_0002	-	hypothetical protein
3	 28.96	0	2530..3444	-	304	84488834	pyrB	Msp_0003	-	aspartate carbamoyltransferase catalytic subunit
4	 27.07	0	3462..4196	-	244	84488835	-	Msp_0004	-	tRNA(1-methyladenosine) methyltransferase
5	 24.41	-1	4253..7066	-	937	84488836	-	Msp_0005	-	helicase
6	 27.39	0	7082..7468	-	128	84488837	-	Msp_0006	-	NUDIX-related protein
7	 28.77	0	7473..9731	-	752	84488838	-	Msp_0007	-	Hef nuclease
8	 31.58	0	10175..11374	-	399	84488839	-	Msp_0008	-	hypothetical protein
9	 29.53	0	11403..12770	-	455	84488840	-	Msp_0009	-	putative single-stranded-DNA-specific exonuclease
10	 30.60	0	12736..13137	-	133	84488841	rps15p	Msp_0010	-	30S ribosomal protein S15P
11	 31.52	0	13239..13790	-	183	84488842	-	Msp_0011	-	putative xanthosine triphosphate pyrophosphatase
12	 34.63	+1	13845..14924	-	359	84488843	-	Msp_0012	-	hypothetical protein
13	 30.97	0	15048..16652	+	534	84488844	-	Msp_0013	-	O-sialoglycoprotein endopeptidase/protein kinase
14	 30.08	0	16660..17490	-	276	84488845	uppP	Msp_0014	-	UppP
15	 32.36	0	17696..18616	-	306	84488846	ilvE	Msp_0015	-	hypothetical protein
16	 28.33	0	18690..19289	-	199	84488847	-	Msp_0016	-	hypothetical protein
17	 26.43	0	19623..20897	+	424	84488848	-	Msp_0017	-	hypothetical protein
18	 26.78	0	21276..22145	-	289	84488849	-	Msp_0019	-	hypothetical protein
19	 31.13	0	22300..23070	+	256	84488850	surE	Msp_0020	-	hypothetical protein
20	 29.39	0	23071..24084	-	337	84488851	-	Msp_0021	-	hypothetical protein
21	 33.94	+1	24192..25184	-	330	84488852	ilvC	Msp_0022	-	ketol-acid reductoisomerase
22	 26.52	0	25444..26499	+	351	84488853	-	Msp_0023	-	hypothetical protein
23	 28.22	0	26602..27285	+	227	84488854	-	Msp_0024	-	hypothetical protein
24	 29.72	0	27305..27802	-	165	84488855	ilvH	Msp_0025	-	acetolactate synthase 3 regulatory subunit
25	 34.88	+1	27804..29483	-	559	84488856	ilvB1	Msp_0026	-	IlvB1
26	 37.00	+2	29173..29499	+	108	84488857	-	Msp_0027	-	hypothetical protein
27	 29.12	0	29541..30038	-	165	84488858	ilvH	Msp_0028	-	acetolactate synthase 3 regulatory subunit
28	 34.28	+1	30031..31719	-	562	84488859	ilvB2	Msp_0029	-	IlvB2
29	 30.68	0	32023..33339	+	438	84488860	purD	Msp_0030	-	phosphoribosylamine--glycine ligase
30	 29.70	0	33553..34461	+	302	84488861	argF	Msp_0031	-	ornithine carbamoyltransferase
31	 33.70	+1	34542..35366	+	274	84488862	hisF	Msp_0032	-	imidazole glycerol phosphate synthase subunit HisF
32	 30.32	0	35562..36491	+	309	84488863	-	Msp_0033	-	hypothetical protein
33	 25.53	0	36512..37447	+	311	84488864	-	Msp_0034	-	putative 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
34	 34.49	+1	37551..37982	-	143	84488865	-	Msp_0035	-	peptidyl-prolyl cis-trans isomerase 1
35	 29.45	0	38180..39928	+	582	84488866	-	Msp_0036	-	putative ATP-dependent helicase
36	 33.93	+1	39958..41124	-	388	84488867	argD	Msp_0037	-	acetylornithine aminotransferase
37	 29.31	0	41543..42238	+	231	84488868	cbiL	Msp_0038	-	CbiL
38	 24.23	-1	42250..43347	-	365	84488869	-	Msp_0039	-	glycosyltransferase
39	 23.64	-1	43359..43688	-	109	84488870	-	Msp_0040	-	hypothetical protein
40	 26.58	0	43777..44013	+	78	84488871	-	Msp_0041	-	hypothetical protein
41	 25.26	-1	44110..44988	+	292	84488872	-	Msp_0042	-	glycosyltransferase
42	 29.21	0	45180..47630	+	816	84488873	-	Msp_0043	-	asn/thr-rich large protein family protein
43	 28.50	0	47838..49079	+	413	84488874	-	Msp_0044	-	glycosyltransferase
44	 26.17	0	49081..50043	+	320	84488875	-	Msp_0045	-	glycosyltransferase
45	 28.91	0	50256..52901	+	881	84488876	-	Msp_0046	-	asn/thr-rich large protein family protein
46	 32.28	0	52995..53756	-	253	84488877	-	Msp_0047	-	3-ketoacyl-(acyl-carrier-protein) reductase
47	 26.75	0	54048..59777	-	1909	84488878	-	Msp_0048	-	asn/thr-rich large protein family protein
48	 28.00	0	60229..61335	-	368	84488879	-	Msp_0049	-	glycosyltransferase
49	 28.65	0	61352..63742	-	796	84488880	-	Msp_0050	-	hypothetical protein
50	 26.01	0	63754..64941	-	395	84488881	-	Msp_0051	-	glycosyltransferase
51	 28.34	0	64938..66059	-	373	84488882	-	Msp_0052	-	glycosyltransferase
52	 29.09	0	66955..68109	-	384	84488883	-	Msp_0053	-	glycosyltransferase
53	 31.88	0	68199..68888	-	229	84488884	-	Msp_0054	-	glycosyltransferase
54	 26.70	0	68998..70188	-	396	84488885	-	Msp_0055	-	glycosyltransferase
55	 26.72	0	70200..71333	-	377	84488886	-	Msp_0056	-	glycosyltransferase
56	 28.04	0	71362..72588	-	408	84488887	-	Msp_0057	-	glycosyltransferase
57	 30.72	0	72635..73630	-	331	84488888	-	Msp_0058	-	nucleoside-diphosphate-sugar epimerase
58	 27.83	0	74019..74636	+	205	84488889	-	Msp_0059	-	hypothetical protein
59	 27.10	0	74643..75524	-	293	84488890	-	Msp_0060	-	putative lipooligosaccharide cholinephosphotransferase
60	 24.39	-1	75918..76655	+	245	84488891	-	Msp_0061	-	hypothetical protein
61	 27.94	0	76652..77356	-	234	84488892	-	Msp_0062	-	hypothetical protein
62	 28.80	0	77359..78813	-	484	84488893	-	Msp_0063	-	polysaccharide biosynthesis protein
63	 28.41	0	78823..79431	-	202	84488894	-	Msp_0064	-	acetyltransferase
64	 26.65	0	79428..80609	-	393	84488895	-	Msp_0065	-	UDP-galactopyranose mutase
65	 26.25	0	80632..81930	-	432	84488896	-	Msp_0066	-	polysaccharide biosynthesis protein
66	 30.27	0	81975..82922	-	315	84488897	-	Msp_0067	-	putative UDP-glucose 4-epimerase
67	 26.11	0	83044..83472	-	142	84488898	-	Msp_0068	-	hypothetical protein
68	 25.00	-1	83593..84612	+	339	84488899	-	Msp_0069	-	hypothetical protein
69	 31.75	0	84622..85506	+	294	84488900	ftr2	Msp_0070	-	tetrahydromethanopterin formyltransferase
70	 27.62	0	85516..86460	+	314	84488901	-	Msp_0071	-	ribokinase
71	 36.49	+2	86551..87438	+	295	84488902	pdx1	Msp_0072	-	pyridoxine biosynthesis protein
72	 28.08	0	87529..88194	+	221	84488903	-	Msp_0073	-	exopolysaccharide synthesis protein
73	 26.97	0	88224..89543	-	439	84488904	-	Msp_0074	-	hypothetical protein
74	 27.62	0	89934..90563	-	209	84488905	-	Msp_0075	-	hypothetical protein
75	 29.93	0	90827..92029	+	400	84488906	-	Msp_0076	-	hypothetical protein
76	 23.44	-1	92049..92594	-	181	84488907	-	Msp_0077	-	hypothetical protein
77	 23.28	-1	92721..93128	+	135	84488908	-	Msp_0078	-	hypothetical protein
78	 26.96	0	93176..93646	+	156	84488909	-	Msp_0079	-	hypothetical protein
79	 30.71	0	93731..94684	-	317	84488910	-	Msp_0080	-	glycosyltransferase
80	 27.51	0	94685..95182	-	165	84488911	-	Msp_0081	-	hypothetical protein
81	 27.36	0	95197..96804	-	535	84488912	-	Msp_0082	-	hypothetical protein
82	 31.56	0	96801..98831	-	676	84488913	metG	Msp_0083	-	methionyl-tRNA synthetase
83	 29.09	0	99079..100422	+	447	84488914	-	Msp_0084	-	DNA primase large subunit
84	 30.15	0	100419..101393	+	324	84488915	-	Msp_0085	-	DNA primase small subunit
85	 26.88	0	101390..102676	-	428	84488916	-	Msp_0086	-	tRNA CCA-pyrophosphorylase
86	 31.08	0	102830..103405	-	191	84488917	cbiT	Msp_0087	-	CbiT
87	 28.83	0	103443..103997	-	184	84488918	-	Msp_0088	-	3-polyprenyl-4-hydroxybenzoate decarboxylase
88	 26.81	0	104008..104559	-	183	84488919	-	Msp_0089	-	2'-5' RNA ligase
89	 31.02	0	104629..105708	-	359	84488920	-	Msp_0090	-	3-dehydroquinate synthase
90	 36.60	+2	105722..106516	-	264	84488921	-	Msp_0091	-	fructose-bisphosphate aldolase
91	 26.88	0	106637..107101	-	154	84488922	-	Msp_0092	-	hypothetical protein
92	 27.78	0	107130..108371	-	413	84488923	-	Msp_0093	-	flavoprotein
93	 29.63	0	108381..108623	-	80	84488924	-	Msp_0094	-	hypothetical protein
94	 32.64	+1	108767..109342	-	191	84488925	-	Msp_0095	-	phosphatidylglycerophosphate synthase
95	 25.68	0	109391..110017	+	208	84488926	-	Msp_0096	-	hypothetical protein
96	 29.08	0	110053..110358	+	101	84488927	-	Msp_0097	-	hypothetical protein
97	 20.40	-2	110369..110716	-	115	84488928	-	Msp_0098	-	hypothetical protein
98	 26.45	0	110750..111214	-	154	84488929	-	Msp_0099	-	hypothetical protein
99	 29.59	0	111241..113325	-	694	84488930	-	Msp_0100	-	helicase
100	 28.44	0	113358..114419	-	353	84488931	-	Msp_0101	-	glycosyltransferase
29.00	MEAN

3.63	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.