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Shigella flexneri 2a str. 2457T, complete genome - 1..4599354 4061 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 51.52 0 190..255 + 21 30061572 thrL S0001 - thr operon leader peptide 2 53.31 0 336..2798 + 820 30061573 thrA S0002 - bifunctional aspartokinase I/homeserine dehydrogenase I 3 56.27 +1 2800..3732 + 310 30061574 thrB S0003 - homoserine kinase 4 53.07 0 3733..5019 + 428 30061575 thrC S0004 - threonine synthase 5 54.86 0 5242..5529 + 95 30061576 - S0005 - hypothetical protein 6 49.55 0 5682..6458 - 258 30061577 yaaA S0006 - hypothetical protein 7 51.78 0 8237..9190 + 317 30061578 talB S0008 - transaldolase B 8 54.08 0 9305..9892 + 195 30061579 mogA S0009 - molybdenum cofactor biosynthesis protein 9 53.26 0 9927..10493 - 188 30061580 yaaH S0010 - hypothetical protein 10 50.56 0 10642..11355 - 237 30061581 - S0012 - hypothetical protein 11 48.40 0 11381..11785 - 134 30061583 yaaI S0013 - hypothetical protein 12 51.17 0 12162..14078 + 638 30061584 dnaK S0014 - molecular chaperone DnaK 13 55.08 0 14167..15297 + 376 30061585 dnaJ S0015 - chaperone protein DnaJ 14 51.43 0 15401..15610 - 69 30061586 gef S0017 - membrane toxin 15 51.24 0 16139..17305 + 388 30061587 nhaA S0018 - pH-dependent sodium/proton antiporter 16 47.44 -1 17371..18270 + 299 30061588 nhaR S0019 - transcriptional activator NhaR 17 52.98 0 18683..19186 - 167 30061589 - S0020 - IS1 orfB 18 52.54 0 19105..19380 - 91 30061590 - S0021 - IS1 orfA 19 46.59 -1 19769..20032 - 87 161486555 rpsT S0022 - 30S ribosomal protein S20 20 48.40 0 20135..20353 + 72 30061592 - S0023 - hypothetical protein 21 52.97 0 20361..21302 + 313 30061593 ribF S0024 - bifunctional riboflavin kinase/FMN adenylyltransferase 22 55.66 +1 21345..24161 + 938 30061594 ileS S0025 - isoleucyl-tRNA synthetase 23 53.74 0 24161..24655 + 164 30061595 lspA S0026 - lipoprotein signal peptidase 24 54.89 0 24742..25191 + 149 30061596 slpA S0027 - FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase) 25 55.10 0 25193..26143 + 316 30061597 ispH S0028 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 26 55.74 +1 26209..27123 + 304 30061598 yaaF S0029 - ribonucleoside hydrolase RihC 27 53.04 0 27290..28111 + 273 30061599 dapB S0030 - dihydrodipicolinate reductase 28 53.44 0 28567..29715 + 382 30061600 carA S0031 - carbamoyl phosphate synthase small subunit 29 55.71 +1 29733..32954 + 1073 30061601 carB S0032 - carbamoyl phosphate synthase large subunit 30 45.96 -1 33216..33611 + 131 161486554 caiF S0033 - DNA-binding transcriptional activator CaiF 31 54.41 0 33697..34308 - 203 30061603 caiE S0034 - carnitine operon protein CaiE 32 52.35 0 34293..35186 - 297 30061604 caiD S0035 - carnitinyl-CoA dehydratase 33 50.73 0 35187..36755 - 522 30061605 caiC S0036 - putative crotonobetaine/carnitine-CoA ligase 34 52.46 0 36814..38031 - 405 30061606 caiB S0037 - crotonobetainyl-CoA:carnitine CoA-transferase 35 53.89 0 38160..39302 - 380 30061607 caiA S0038 - crotonobetainyl-CoA dehydrogenase 36 52.21 0 39333..40847 - 504 30061608 caiT S0039 - L-carnitine/gamma-butyrobetaine antiporter 37 52.66 0 41203..41973 + 256 161486553 fixA S0040 - putative electron transfer flavoprotein FixA 38 55.17 0 42980..44266 + 428 30061610 fixC S0042 - putative oxidoreductase FixC 39 56.60 +1 44263..44550 + 95 30061611 fixX S0043 - putative ferredoxin 40 52.26 0 44609..46003 + 464 30061612 yaaU S0044 - putative transport protein 41 55.37 0 46051..46581 + 176 30061613 yabF S0045 - glutathione-regulated potassium-efflux system ancillary protein KefF 42 55.29 0 46574..48436 + 620 30061614 kefC S0046 - glutathione-regulated potassium-efflux system protein KefC 43 52.92 0 48627..49106 + 159 30061615 folA S0047 - dihydrofolate reductase 44 55.99 +1 49184..50026 - 280 30061616 apaH S0048 - diadenosine tetraphosphatase 45 51.85 0 50033..50410 - 125 30061617 apaG S0049 - ApaG 46 53.41 0 50413..51234 - 273 30061618 ksgA S0050 - dimethyladenosine transferase 47 56.26 +1 51231..52220 - 329 30061619 pdxA S0051 - 4-hydroxythreonine-4-phosphate dehydrogenase 48 53.85 0 52220..53506 - 428 30061620 surA S0052 - peptidyl-prolyl cis-trans isomerase SurA 49 51.38 0 53559..55913 - 784 30061621 imp S0053 - organic solvent tolerance protein 50 52.94 0 56168..56983 + 271 30061622 djlA S0054 - DNA-J like membrane chaperone protein 51 54.24 0 57100..57759 - 219 30061623 yabO S0055 - 23S rRNA/tRNA pseudouridine synthase A 52 54.87 0 57771..60677 - 968 30061624 hepA S0056 - ATP-dependent helicase HepA 53 55.19 0 60842..63193 - 783 30061625 polB S0057 - DNA polymerase II 54 55.17 0 63268..63963 - 231 30061626 araD S0058 - L-ribulose-5-phosphate 4-epimerase 55 55.29 0 64163..65665 - 500 30061627 araA S0059 - L-arabinose isomerase 56 58.08 +1 65676..67376 - 566 30061628 araB S0060 - ribulokinase 57 52.67 0 67715..68593 + 292 30061629 araC S0061 - DNA-binding transcriptional regulator AraC 58 54.51 0 68679..69443 + 254 30061630 yabI S0062 - hypothetical protein 59 56.94 +1 69557..70255 - 232 30061631 thiQ S0063 - thiamine transporter ATP-binding subunit 60 58.54 +1 70239..71849 - 536 30061632 thiP S0064 - thiamine transporter membrane protein 61 52.74 0 71825..72808 - 327 30061633 tbpA S0065 - thiamine transporter substrate binding subunit 62 55.19 0 72972..74627 - 551 30061634 yabN S0066 - transcriptional regulator SgrR 63 48.09 0 74949..76127 + 392 30061635 yabM S0067 - putative transport protein 64 52.15 0 76176..76781 - 201 30061636 leuD S0068 - isopropylmalate isomerase small subunit 65 55.32 0 76792..78192 - 466 30061637 leuC S0069 - isopropylmalate isomerase large subunit 66 55.22 0 78195..79286 - 363 161486552 leuB S0070 - 3-isopropylmalate dehydrogenase 67 52.74 0 79286..80857 - 523 30061639 leuA S0071 - 2-isopropylmalate synthase 68 47.13 -1 80950..81036 - 28 30061640 leuL S0072 - leu operon leader peptide 69 45.71 -1 81695..82639 + 314 161486551 leuO S0073 - leucine transcriptional activator 70 52.81 0 82957..84681 + 574 161486550 ilvI S0074 - acetolactate synthase 3 catalytic subunit 71 50.20 0 84684..85175 + 163 30061643 ilvH S0075 - acetolactate synthase 3 regulatory subunit 72 47.13 -1 85188..85274 + 28 30061644 fruL S0076 - fruR leader peptide 73 54.93 0 85356..86360 + 334 30061645 fruR S0077 - DNA-binding transcriptional regulator FruR 74 52.54 0 86483..86758 + 91 30061646 - S0078 - IS1 orfA 75 52.58 0 86677..87180 + 167 30061647 - S0079 - IS1 orfB 76 52.07 0 87739..88197 + 152 30061648 yabB S0080 - cell division protein MraZ 77 55.20 0 88199..89140 + 313 30061649 mraW S0081 - S-adenosyl-methyltransferase MraW 78 50.55 0 89137..89502 + 121 30061650 ftsL S0082 - cell division protein FtsL 79 53.88 0 89518..91284 + 588 30061651 ftsI S0083 - penicillin-binding protein 3; peptidoglycan synthetase 80 56.79 +1 91271..92758 + 495 30061652 murE S0084 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 81 54.82 0 92755..94113 + 452 30061653 murF S0085 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 82 52.82 0 94107..95189 + 360 30061654 mraY S0086 - phospho-N-acetylmuramoyl-pentapeptide-transferase 83 55.35 0 95192..96508 + 438 30061655 murD S0087 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 84 52.53 0 96508..97752 + 414 30061656 ftsW S0088 - cell division protein FtsW 85 55.71 +1 97749..98816 + 355 30061657 murG S0089 - N-acetylglucosaminyl transferase 86 54.40 0 98870..100345 + 491 30061658 murC S0090 - UDP-N-acetylmuramate--L-alanine ligase 87 51.36 0 100338..101258 + 306 30061659 ddl S0091 - D-alanine--D-alanine ligase 88 53.31 0 101260..102090 + 276 30061660 ftsQ S0092 - cell division protein FtsQ 89 52.02 0 102087..103349 + 420 30061661 ftsA S0093 - cell division protein FtsA 90 53.91 0 103410..104561 + 383 30061662 ftsZ S0094 - cell division protein FtsZ 91 51.20 0 104662..105579 + 305 30061663 lpxC S0095 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 92 54.00 0 105810..106322 + 170 161486549 yacA S0096 - SecA regulator SecM 93 52.22 0 106384..109089 + 901 30061665 secA S0097 - preprotein translocase subunit SecA 94 49.23 0 109149..109538 + 129 30061666 mutT S0098 - nucleoside triphosphate pyrophosphohydrolase 95 54.81 0 109553..109687 - 44 30061667 - S0099 - hypothetical protein 96 52.02 0 109638..109835 - 65 30061668 yacG S0100 - zinc-binding protein 97 51.21 0 109845..110588 - 247 30061669 yacF S0101 - hypothetical protein 98 52.33 0 110588..111208 - 206 30061670 coaE S0102 - dephospho-CoA kinase 99 51.72 0 111433..112476 + 347 30061671 guaC S0103 - guanosine 5'-monophosphate oxidoreductase 100 51.85 0 112396..112503 - 35 30061672 - S0104 - hypothetical protein 51.60 MEAN 4.04 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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