version 1.0
Helicobacter pylori HPAG1, complete genome - 1..1596366 1536 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 39.37 0 513..1274 - 253 108562425 - HPAG1_1536 - hypothetical protein 2 41.49 0 1529..1945 - 138 108562426 nusB HPAG1_0001 - transcription antitermination protein NusB 3 46.50 +2 1947..2417 - 156 108562427 ribH HPAG1_0002 - riboflavin synthase subunit beta 4 42.96 +1 2427..3257 - 276 108562428 - HPAG1_0003 - 2-dehydro-3-deoxyphosphooctonate aldolase 5 39.94 0 3244..3909 - 221 108562429 - HPAG1_0004 - beta-carbonic anhydrase 6 40.06 0 4032..4715 + 227 108562430 - HPAG1_0005 - orotidine 5'-phosphate decarboxylase 7 42.00 0 4716..5546 + 276 108562431 panC HPAG1_0006 - pantoate--beta-alanine ligase 8 48.61 +2 6020..6091 + 23 108562432 - HPAG1_0007 - hypothetical protein 9 31.79 -2 6138..6332 + 64 108562433 - HPAG1_0008 - hypothetical protein 10 43.30 +1 6598..8493 - 631 108562434 - HPAG1_0009 - outer membrane protein HopZ 11 45.46 +1 8914..10554 - 546 108562435 groEL HPAG1_0010 - chaperonin GroEL 12 41.18 0 10579..10935 - 118 108562436 groES HPAG1_0011 - co-chaperonin GroES 13 39.52 0 11222..12901 + 559 108562437 dnaG HPAG1_0012 - DNA primase 14 41.22 0 12898..13950 + 350 108562438 - HPAG1_0013 - hypothetical protein 15 39.11 0 14035..14865 + 276 108562439 - HPAG1_0014 - hypothetical protein 16 38.30 0 15010..15291 + 93 108562440 - HPAG1_0015 - hypothetical protein 17 33.71 -1 15291..15554 + 87 108562441 - HPAG1_0016 - hypothetical protein 18 37.44 0 15556..17919 + 787 108562442 - HPAG1_0017 - ATPase/DNA transfer protein 19 39.15 0 18152..19561 + 469 108562443 - HPAG1_0018 - hypothetical protein 20 40.06 0 19657..20622 + 321 108562444 - HPAG1_0019 - chemotaxis protein 21 42.61 0 20619..21836 + 405 108562445 - HPAG1_0020 - carboxynorspermidine decarboxylase 22 44.80 +1 21846..22412 - 188 108562446 - HPAG1_0021 - lipid A 1-phosphatase 23 39.82 0 22422..23993 - 523 108562447 - HPAG1_0022 - lipid A phosphoethanolamine transferase 24 43.73 +1 24612..26678 - 688 108562448 - HPAG1_0023 - outer membrane protein HopD 25 44.03 +1 27207..28487 - 426 108562449 gltA HPAG1_0024 - type II citrate synthase 26 42.72 0 28696..29973 + 425 108562450 - HPAG1_0025 - isocitrate dehydrogenase 27 37.64 0 30034..30567 + 177 108562451 - HPAG1_0026 - hypothetical protein 28 40.18 0 30544..31200 - 218 108562452 - HPAG1_0027 - dethiobiotin synthetase 29 35.93 0 31204..32937 - 577 108562453 - HPAG1_0028 - hypothetical protein 30 39.13 0 33046..33459 + 137 108562454 - HPAG1_0029 - hypothetical protein 31 44.93 +1 33474..33749 + 91 108562455 - HPAG1_0030 - hypothetical protein 32 39.76 0 33749..35974 + 741 108562456 - HPAG1_0031 - ATP-dependent C1p protease 33 41.60 0 35964..36314 + 116 108562457 - HPAG1_0032 - aspartate alpha-decarboxylase 34 39.80 0 36325..36618 + 97 108562458 - HPAG1_0033 - hypothetical protein 35 39.04 0 36615..37613 + 332 108562459 - HPAG1_0034 - hypothetical protein 36 38.07 0 37621..38676 + 351 108562460 - HPAG1_0035 - NADH-ubiquinone oxidoreductase subunit 37 36.84 0 38692..38805 + 37 108562461 - HPAG1_0036 - comB7 putative lipoprotein 38 40.86 0 38802..39545 + 247 108562462 - HPAG1_0037 - comB8 competence protein 39 36.19 0 39542..40522 + 326 108562463 - HPAG1_0038 - comB9 competence protein 40 42.71 0 40515..41645 + 376 108562464 - HPAG1_0039 - comB10 competence protein 41 39.35 0 41715..43127 + 470 108562465 - HPAG1_0040 - mannose-6-phosphate isomerase 42 41.19 0 43157..44302 + 381 108562466 - HPAG1_0041 - GDP-D-mannose dehydratase 43 40.94 0 44295..45227 + 310 108562467 - HPAG1_0042 - GDP-fucose synthetase 44 41.54 0 45541..46539 - 332 108562468 - HPAG1_0043 - hydrogenase expression/formation protein 45 40.78 0 46542..48851 - 769 108562469 - HPAG1_0044 - transcriptional regulator 46 39.88 0 48791..49783 - 330 108562470 - HPAG1_0045 - hypothetical protein 47 39.54 0 49843..50535 - 230 108562471 - HPAG1_0046 - adenine specific DNA methyltransferase 48 39.51 0 50532..51599 - 355 108562472 - HPAG1_0047 - cytosine specific DNA methyltransferase 49 32.46 -1 51621..52652 - 343 108562473 - HPAG1_0048 - type II DNA modification enzyme 50 32.28 -1 52662..53231 - 189 108562474 - HPAG1_0049 - type II restriction enzyme 51 28.44 -2 53219..53443 - 74 108562475 - HPAG1_0050 - type II restriction enzyme 52 35.42 -1 53634..53777 - 47 108562476 - HPAG1_0051 - adenine/cytosine DNA methyltransferase 53 42.52 0 53815..55305 - 496 108562477 - HPAG1_0052 - sodium/proline symporter 54 40.81 0 55332..58889 - 1185 108562478 - HPAG1_0053 - proline/delta 1-pyrroline-5-carboxylate dehydrogenase 55 37.62 0 59216..59425 + 69 108562479 - HPAG1_0054 - hypothetical protein 56 31.25 -2 59510..59701 + 63 108562480 - HPAG1_0055 - M-protein 57 35.51 -1 59932..60528 + 198 108562481 - HPAG1_0056 - hypothetical protein 58 39.87 0 60529..61278 + 249 108562482 - HPAG1_0057 - hypothetical protein 59 39.05 0 61289..62494 + 401 108562483 - HPAG1_0058 - hypothetical protein 60 40.45 0 62404..63639 + 411 108562484 - HPAG1_0059 - hypothetical protein 61 38.38 0 63640..63738 + 32 108562485 - HPAG1_0060 - hypothetical protein 62 40.19 0 63764..64303 + 179 108562486 - HPAG1_0061 - hypothetical protein 63 41.38 0 64319..64579 + 86 108562487 - HPAG1_0062 - hypothetical protein 64 38.70 0 64589..66394 + 601 108562488 - HPAG1_0063 - hypothetical protein 65 38.10 0 66364..66783 + 139 108562489 - HPAG1_0064 - hypothetical protein 66 35.59 -1 66785..67138 + 117 108562490 - HPAG1_0065 - hypothetical protein 67 38.05 0 67131..67745 + 204 108562491 - HPAG1_0066 - ATP-binding protein 68 41.45 0 67751..69562 + 603 108562492 - HPAG1_0067 - ATP-binding protein 69 44.24 +1 69707..70504 - 265 108562493 - HPAG1_0068 - urease accessory protein UreH 70 44.83 +1 70504..71103 - 199 108562494 - HPAG1_0069 - urease accessory protein UreG 71 41.41 0 71132..71899 - 255 108562495 - HPAG1_0070 - urease accessory protein UreF 72 40.94 0 71911..72423 - 170 108562496 ureE HPAG1_0071 - urease accessory protein UreE 73 43.20 +1 72425..73012 - 195 108562497 - HPAG1_0072 - urease accessory protein/pH-dependent urea-transporter UreI 74 43.92 +1 73205..74914 - 569 108562498 ureC HPAG1_0073 - urease subunit alpha 75 41.84 0 74918..75634 - 238 108562499 - HPAG1_0074 - bifunctional urease subunit gamma/beta 76 36.92 0 75980..76453 - 157 108562500 lspA HPAG1_0075 - lipoprotein signal peptidase 77 41.33 0 76447..77784 - 445 108562501 - HPAG1_0076 - phosphoglucosamine mutase 78 38.52 0 77874..78143 + 89 108562502 rpsT HPAG1_0077 - 30S ribosomal protein S20 79 43.06 +1 78268..79326 + 352 108562503 prfA HPAG1_0078 - peptide chain release factor 1 80 41.47 0 79739..79996 + 85 108562504 - HPAG1_0079 - reminiscent outer membrane protein HorA 81 43.02 +1 80008..81711 + 567 108562505 - HPAG1_0080 - outer membrane protein HorA 82 41.91 0 81957..83693 + 578 108562506 - HPAG1_0081 - hypothetical protein 83 36.04 0 83867..83977 + 36 108562507 - HPAG1_0082 - hypothetical protein 84 39.07 0 84115..86136 - 673 108562508 - HPAG1_0083 - methyl-accepting chemotaxis protein 85 42.82 0 86288..86677 - 129 108562509 rpsI HPAG1_0084 - 30S ribosomal protein S9 86 42.02 0 86674..87099 - 141 108562510 rplM HPAG1_0085 - 50S ribosomal protein L13 87 36.51 0 87403..87591 - 62 108562511 - HPAG1_0086 - hypothetical protein 88 41.02 0 87598..88950 - 450 108562512 - HPAG1_0087 - hypothetical protein 89 40.10 0 89004..90377 - 457 108562513 - HPAG1_0088 - hypothetical protein 90 38.72 0 90398..92476 - 692 108562514 - HPAG1_0089 - RNA polymerase sigma factor RpoD 91 42.82 0 92666..93361 - 231 108562515 - HPAG1_0090 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 92 43.01 +1 93372..94301 - 309 108562516 - HPAG1_0091 - acyl-carrier-protein S-malonyltransferase 93 36.64 0 94738..95736 + 332 108562517 - HPAG1_0092 - HrgA protein 94 39.66 0 95740..96561 + 273 108562518 - HPAG1_0093 - type II adenine methyltransferase 95 40.29 0 96584..97489 - 301 108562519 - HPAG1_0094 - alpha-1,2-fucosyltransferase 96 36.72 0 97585..98115 - 176 108562520 - HPAG1_0095 - hypothetical protein 97 40.00 0 98188..99132 + 314 108562521 - HPAG1_0096 - 2-hydroxyacid dehydrogenase 98 40.90 0 99279..99992 - 237 108562522 - HPAG1_0097 - hypothetical protein 99 41.27 0 100097..101557 - 486 108562523 - HPAG1_0098 - threonine synthase 100 39.79 0 101761..103788 + 675 108562524 - HPAG1_0099 - methyl-accepting chemotaxis transmembrane sensory protein 39.24 MEAN 3.61 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0