IslandPath Analysis: Pyrococcus abyssi GE5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.82   STD DEV: 3.66
Pyrococcus abyssi GE5, complete genome - 1..1765118
1896 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.08	0	125..619	-	164	14520219	rpl11p	PAB2353	-	50S ribosomal protein L11P
2	 46.62	0	631..1089	-	152	14520220	nusG	PAB2352	-	transcription antitermination protein NusG
3	 44.09	0	1094..1279	-	61	14520221	secE	PAB3002	-	preprotein translocase subunit SecE
4	 47.10	0	1332..2450	-	372	14520222	ftsZ-1	PAB2351	-	cell division protein FtsZ
5	 45.89	0	2519..2932	-	137	14520223	-	PAB2350	-	hypothetical protein
6	 36.73	-2	2962..3255	-	97	33356656	-	PAB2350.1n	-	hypothetical protein
7	 43.71	0	3291..4109	-	272	14520224	-	PAB2349	-	hypothetical protein
8	 44.16	0	4189..4890	+	233	14520225	-	PAB0004	-	hypothetical protein
9	 40.70	-1	5205..5489	+	94	33356657	-	PAB0004.1n	-	hypothetical protein
10	 39.42	-1	5795..6139	+	114	14520226	-	PAB0005	-	hypothetical protein
11	 39.39	-1	6200..6430	+	76	33356658	-	PAB0005.1n	-	hypothetical protein
12	 45.95	0	6417..7034	+	205	14520227	-	PAB0006	-	hypothetical protein
13	 45.60	0	7012..7851	-	279	14520228	nadC	PAB2347	-	nicotinate-nucleotide pyrophosphorylase
14	 45.19	0	7855..8655	-	266	14520229	-	PAB2346	-	hypothetical protein
15	 47.36	0	8657..9583	-	308	14520230	-	PAB2345	-	quinolinate synthetase
16	 42.49	0	9596..10786	-	396	14520231	-	PAB2344	-	hypothetical protein
17	 47.38	0	10818..12212	-	464	14520232	-	PAB2343	-	L-aspartate oxidase
18	 44.61	0	12209..13618	-	469	14520233	-	PAB2342	-	phosphoenolpyruvate carboxylase
19	 40.43	-1	13874..14620	+	248	14520234	-	PAB0011	-	hypothetical protein
20	 52.63	+2	14665..16317	-	550	14520235	thsA	PAB2341	-	thermosome, subunit alpha
21	 44.10	0	16469..17248	+	259	14520236	-	PAB0014	-	hypothetical protein
22	 39.53	-1	17267..17653	-	128	14520237	-	PAB2340	-	hypothetical protein
23	 39.72	-1	17640..18062	-	140	14520238	-	PAB2339	-	hypothetical protein
24	 43.43	0	18111..18833	-	240	14520239	-	PAB2338	-	pyruvate formate-lyase activating enzyme related protein
25	 45.57	0	18840..20816	-	658	14520240	-	PAB2337	-	anaerobic ribonucleoside triphosphate reductase
26	 45.84	0	20895..21989	-	364	14520241	-	PAB2336	-	maltose/maltodextrin transport atp-binding
27	 44.12	0	21995..22828	-	277	14520242	-	PAB2335	-	sugar ABC transporter, permease protein
28	 43.74	0	22825..23679	-	284	14520243	-	PAB2334	-	sugar ABC transporter, permease protein
29	 45.90	0	23719..24999	-	426	14520244	-	PAB2333	-	putative trehalose/maltose binding protein or spermidine/putrescine-binding periplasmic
30	 43.24	0	25162..26181	+	339	14520245	-	PAB0017	-	hypothetical protein
31	 46.38	0	26178..26453	-	91	14520246	ef1B	PAB3009	-	elongation factor 1-beta
32	 54.69	+2	26454..26645	-	63	14521984	-	PAB0018a	-	Zn-ribbon RNA-binding protein involved in translation
33	 44.48	0	26740..27573	+	277	161723322	ubiA	PAB0018	-	prenyltransferase UbiA-like protein
34	 42.78	0	27574..27954	+	126	14520248	-	PAB0019	-	hypothetical protein
35	 44.76	0	28198..29676	+	492	14520249	putP-3	PAB2354	-	proline symporter (proline permease).
36	 49.65	+1	29724..31598	-	624	14520250	aor-3	PAB2330	-	aldehyde ferredoxin oxidoreductase
37	 47.38	0	31589..32428	-	279	14520251	-	PAB2329	-	morphine 6-dehydrogenase - like
38	 38.62	-1	32562..32807	+	81	33356659	-	PAB2330.2n	-	hypothetical protein
39	 39.52	-1	32804..33013	-	69	33356660	-	PAB2330.3n	-	hypothetical protein
40	 45.10	0	33017..33322	-	101	14520252	-	PAB2328	-	hypothetical protein
41	 43.77	0	33424..34017	-	197	14520253	-	PAB2327	-	hypothetical protein
42	 41.46	0	34176..34790	+	204	14520254	-	PAB0023	-	hypothetical protein
43	 48.37	0	34782..35792	-	336	14520255	-	PAB2326	-	hypothetical protein
44	 44.66	0	36130..36597	-	155	33356661	-	PAB2325	-	hypothetical protein
45	 47.20	0	36567..36905	-	112	14520257	-	PAB2324	-	hypothetical protein
46	 45.00	0	37021..37560	-	179	14520258	-	PAB2323	-	hypothetical protein
47	 35.84	-2	37587..38024	-	145	14520259	-	PAB2322	-	hypothetical protein
48	 34.42	-2	38075..38350	-	91	33356662	-	PAB2322.1n	-	hypothetical protein
49	 36.93	-2	38347..39096	-	249	14520260	-	PAB2321	-	hypothetical protein
50	 46.07	0	39205..39903	-	232	14520261	cobS	PAB2320	-	cobalamin synthase
51	 46.51	0	39900..40157	-	85	14520262	-	PAB3017	-	hypothetical protein
52	 47.45	0	40150..40581	-	143	14520263	-	PAB2319	-	hypothetical protein
53	 47.08	0	40644..41516	+	290	14520264	cobD	PAB0025	-	cobalamin biosynthesis protein
54	 45.76	0	41501..42490	+	329	14520265	hisC	PAB0026	-	putative aminotransferase
55	 49.31	+1	42458..43690	-	410	14520266	-	PAB2318	-	cofactor-independent phosphoglycerate mutase
56	 44.62	0	43723..44652	-	309	14520267	-	PAB2317	-	modification methylase
57	 49.31	+1	44628..44915	-	95	14520268	rpoL	PAB2316	-	DNA-directed RNA polymerase subunit L
58	 48.33	0	44875..45534	-	219	14520269	-	PAB2315	-	hypothetical protein
59	 46.17	0	45531..46130	-	199	14520270	-	PAB2314	-	exosome complex RNA-binding protein Csl4
60	 47.16	0	46097..48664	-	855	14520271	-	PAB2313	-	ATP-dependent RNA helicase, putative
61	 42.52	0	48673..49140	-	155	14520272	-	PAB2312	-	transcriptional regulatory protein or leucine-responsive-regulatory protein
62	 45.32	0	49144..49485	-	113	14520273	-	PAB2311	-	hypothetical protein
63	 45.91	0	49577..50053	-	158	14520274	-	PAB2310	-	hypothetical protein
64	 46.80	0	50007..51692	+	561	14520275	-	PAB0027	-	hypothetical protein
65	 46.19	0	51679..52767	-	362	14520276	-	PAB2307	-	dolichol-phosphate mannosyltransferase
66	 48.39	0	52802..53485	-	227	14520277	-	PAB2306	-	fibrillarin
67	 47.90	0	53491..54705	-	404	14520278	-	PAB2305	-	hypothetical protein
68	 45.01	0	54784..55836	-	350	14520279	-	PAB2304	-	hypothetical protein
69	 46.73	0	55898..56890	-	330	14520280	-	PAB2303	-	D-cysteine desulfhydrase
70	 44.73	0	57439..58131	-	230	14520281	-	PAB2302	-	hypothetical protein
71	 45.70	0	58109..58666	-	185	14520282	-	PAB2301	-	hit family protein
72	 46.33	0	59426..59902	+	158	14520283	rps15p	PAB0033	-	30S ribosomal protein S15P
73	 47.58	0	59921..61366	+	481	14520284	recJ-like	PAB0034	-	putative ss-DNA-specific exonuclease recj related
74	 46.93	0	61592..62194	+	200	14520285	rps3AE	PAB0035	-	30S ribosomal protein S3Ae
75	 38.48	-1	62191..62637	-	148	14520286	-	PAB2299	-	transcriptional regulator
76	 41.35	0	62719..62955	-	78	14520287	-	PAB3022	-	hypothetical protein
77	 43.95	0	62969..63373	-	134	14520288	-	PAB2298	-	hypothetical protein
78	 41.21	0	63491..64252	+	253	14520289	-	PAB0036	-	hypothetical protein
79	 47.07	0	64275..65024	+	249	14520290	-	PAB0037	-	hypothetical protein
80	 43.06	0	65018..65233	+	71	33356663	-	PAB0037.1n	-	hypothetical protein
81	 44.44	0	65431..65655	+	74	33356664	-	PAB0037.2n	-	hypothetical protein
82	 40.37	-1	65639..66661	-	340	14520291	-	PAB2294	-	asparaginase related protein
83	 41.38	0	66717..67412	-	231	14520292	-	PAB2293	-	hypothetical protein
84	 39.87	-1	67480..67938	+	152	14520293	-	PAB0038	-	hypothetical protein
85	 43.46	0	68005..69318	-	437	14520294	-	PAB2292	-	glycogen synthase
86	 43.24	0	69342..70229	+	295	14520295	-	PAB0040	-	hypothetical protein
87	 43.43	0	70230..70853	-	207	33356665	-	PAB2291	-	hypothetical protein
88	 40.67	-1	70852..71451	+	199	14520297	-	PAB0041	-	hypothetical protein
89	 43.40	0	71513..72088	+	191	14520298	-	PAB0042	-	hypothetical protein
90	 43.97	0	72006..72494	+	162	14520299	-	PAB0043	-	hypothetical protein
91	 43.94	0	72491..73018	-	175	14520300	-	PAB2289	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
92	 41.76	0	73127..73969	+	280	14520301	-	PAB0044	-	hypothetical protein
93	 45.95	0	73993..75078	+	361	14520302	-	PAB0045	-	d-aminopeptidase.
94	 43.82	0	75075..76142	+	355	14520303	-	PAB0046	-	hypothetical protein
95	 43.81	0	76241..76975	-	244	14520304	-	PAB2288	-	molybdopterin-guanine dinucleotide biosynthesis protein b related
96	 46.19	0	76968..77177	-	69	33356666	-	PAB2288.1n	-	hypothetical protein
97	 35.81	-2	77236..78891	-	551	14520305	-	PAB2287	-	hypothetical protein
98	 48.58	+1	79050..79895	+	281	14520306	-	PAB0049	-	fructose-bisphosphate aldolase
99	 45.89	0	79959..80810	+	283	14520307	speB	PAB0050	-	agmatinase
100	 41.77	0	80807..81292	+	161	33356667	-	PAB0051	-	hypothetical protein
44.82	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.