IslandPath Analysis: Mycoplasma hyopneumoniae J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.24   STD DEV: 4.17
Mycoplasma hyopneumoniae J, complete genome - 1..897405
665 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 26.70	0	198..1598	+	466	71893360	dnaA	MHJ_0001	-	chromosomal replication initiation protein
2	 28.23	0	1743..2879	+	378	71893361	dnaN	MHJ_0002	-	DNA polymerase III beta subunit
3	 32.95	0	3010..4842	+	610	71893362	gidA	MHJ_0003	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
4	 29.08	0	4854..5300	+	148	71893363	-	MHJ_0004	-	hypothetical protein
5	 28.96	0	5314..6297	+	327	71893364	-	MHJ_0005	-	putative MgpA like-protein
6	 29.18	0	6299..7261	+	320	71893365	-	MHJ_0006	-	DHH family phosphoesterase
7	 26.51	0	7289..7933	+	214	71893366	-	MHJ_0007	-	hypothetical protein
8	 32.34	0	8023..9024	+	333	71893367	ftsY	MHJ_0008	-	cell division protein ftsY
9	 29.98	0	9190..11214	+	674	71893368	-	MHJ_0009	-	hypothetical protein
10	 29.07	0	11299..12306	+	335	71893369	hrcA	MHJ_0010	-	heat-inducible transcription repressor
11	 27.09	0	12303..13055	+	250	71893370	grpE	MHJ_0011	-	heat shock protein
12	 28.10	0	13039..14643	+	534	71893371	argS	MHJ_0012	-	arginyl-tRNA synthetase
13	 30.49	0	14648..14893	+	81	71893372	-	MHJ_0013	-	hypothetical protein
14	 36.00	+1	14966..15829	+	287	71893373	fba	MHJ_0014	-	fructose-bisphosphate aldolase
15	 25.18	0	15836..16681	+	281	71893374	rluC	MHJ_0015	-	ribosomal large subunit pseudouridine synthase C
16	 19.55	-2	16715..17026	-	103	71893375	-	MHJ_0016	-	hypothetical protein
17	 25.51	0	17416..17658	-	80	71893376	-	MHJ_0017	-	hypothetical protein
18	 25.09	0	17804..20071	-	755	71893377	-	MHJ_0018	-	putative ABC transporter ATP-binding protein
19	 25.61	0	20265..22505	-	746	71893378	-	MHJ_0019	-	putative ABC transporter ATP-binding protein
20	 26.29	0	22579..24906	-	775	71893379	-	MHJ_0020	-	putative ABC transporter ATP-binding protein
21	 31.56	0	24893..25570	-	225	71893380	-	MHJ_0021	-	hypothetical protein
22	 26.53	0	26074..26514	+	146	71893381	sipS	MHJ_0022	-	signal peptidase I
23	 26.73	0	26677..27009	+	110	71893382	gatC	MHJ_0023	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
24	 29.78	0	26999..28321	+	440	71893383	gatA	MHJ_0024	-	amidase
25	 26.48	0	28314..29714	+	466	71893384	gatB	MHJ_0025	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
26	 27.25	0	29945..30454	+	169	71893385	-	MHJ_0026	-	hypothetical protein
27	 26.14	0	30571..31098	-	175	71893386	lsp	MHJ_0027	-	lipoprotein signal peptidase
28	 30.63	0	31142..33805	-	887	71893387	ileS	MHJ_0028	-	isoleucyl-tRNA synthetase
29	 28.26	0	33802..36342	-	846	71893388	parC	MHJ_0029	-	DNA topoisomerase IV subunit A
30	 31.47	0	36335..38263	-	642	71893389	parE	MHJ_0030	-	topoisomerase IV subunit B
31	 35.31	+1	38473..39483	+	336	71893390	gap	MHJ_0031	-	glyceraldehyde 3-phosphate dehydrogenase
32	 29.02	0	39582..41576	+	664	71893391	-	MHJ_0032	-	hypothetical protein
33	 28.52	0	41677..43755	-	692	71893392	vacB	MHJ_0033	-	VACB-like ribonuclease II
34	 23.78	-1	44054..45592	-	512	71893393	cls	MHJ_0034	-	cardiolipin synthetase
35	 34.44	+1	45597..46586	-	329	71893394	recA	MHJ_0035	-	recombinase A
36	 24.60	-1	46817..47572	+	251	71893395	licA	MHJ_0036	-	PTS system, lichenan-specific IIA component
37	 30.63	0	47574..48833	+	419	71893396	obgE	MHJ_0037	-	GTPase ObgE
38	 28.81	0	48936..49289	+	117	71893397	-	MHJ_0038	-	hypothetical protein
39	 28.45	0	49293..50501	+	402	71893398	-	MHJ_0039	-	hypothetical protein
40	 28.17	0	50503..50928	+	141	71893399	-	MHJ_0040	-	hypothetical protein
41	 23.64	-1	50955..52130	+	391	71893400	dinP	MHJ_0041	-	DNA polymerase IV
42	 21.06	-1	52135..52566	+	143	71893401	-	MHJ_0042	-	hypothetical protein
43	 27.05	0	52563..53294	+	243	71893402	atpB	MHJ_0043	-	F0F1 ATP synthase subunit A
44	 39.22	+2	53322..53627	+	101	71893403	atpE	MHJ_0044	-	F0F1 ATP synthase subunit C
45	 27.41	0	53657..54247	+	196	71893404	atpF	MHJ_0045	-	ATP synthase subunit B
46	 22.58	-1	54253..54810	+	185	71893405	atpH	MHJ_0046	-	F0F1 ATP synthase subunit delta
47	 34.51	+1	54826..56352	+	508	71893406	atpA-1	MHJ_0047	-	F0F1 ATP synthase subunit alpha
48	 25.15	0	56381..57211	+	276	71893407	atpG	MHJ_0048	-	ATP synthase gamma chain
49	 36.79	+1	57229..58644	+	471	71893408	atpD	MHJ_0049	-	F0F1 ATP synthase subunit beta
50	 26.13	0	59000..59485	+	161	71893409	recU	MHJ_0050	-	Holliday junction-specific endonuclease
51	 31.78	0	59762..60664	+	300	71893410	rpsB	MHJ_0051	-	30S ribosomal protein S2
52	 31.80	0	60695..61606	+	303	71893411	tsf	MHJ_0052	-	elongation factor Ts
53	 31.14	0	61691..63013	+	440	71893412	ffh	MHJ_0053	-	signal recognition particle protein
54	 29.98	0	63038..64408	+	456	71893413	glyS	MHJ_0054	-	glycyl-tRNA synthetase
55	 27.09	0	64401..66242	+	613	71893414	dnaG	MHJ_0055	-	DNA primase
56	 32.24	0	66824..68293	+	489	71893415	rpoD	MHJ_0056	-	RNA polymerase sigma factor
57	 27.78	0	68300..69073	+	257	71893416	-	MHJ_0057	-	hypothetical protein
58	 30.93	0	69067..69897	+	276	71893417	nfo	MHJ_0058	-	endonuclease IV
59	 28.43	0	69913..71157	+	414	71893418	tyrS	MHJ_0059	-	tyrosyl tRNA synthetase
60	 26.24	0	71564..75931	+	1455	71893419	-	MHJ_0060	-	hypothetical protein
61	 24.66	-1	76174..78882	+	902	71893420	-	MHJ_0061	-	hypothetical protein
62	 23.65	-1	78940..80457	-	505	71893421	uvrC	MHJ_0062	-	excinuclease ABC subunit C
63	 35.27	+1	81104..82906	+	600	71893422	dnaK	MHJ_0063	-	molecular chaperone DnaK
64	 35.64	+1	83117..84241	+	374	71893423	dnaJ	MHJ_0064	-	heat shock protein DnaJ
65	 29.71	0	84300..84989	+	229	71893424	cmk	MHJ_0065	-	cytidylate kinase
66	 29.27	0	85004..86308	+	434	71893425	engA	MHJ_0066	-	GTP-binding protein EngA
67	 29.90	0	86342..86632	+	96	71893426	himA	MHJ_0067	-	nucleoid DNA-binding protein
68	 29.87	0	86635..86865	+	76	71893427	-	MHJ_0068	-	hypothetical protein
69	 34.45	+1	86866..88662	+	598	71893428	lepA	MHJ_0069	-	GTP-binding protein LepA
70	 29.47	0	88724..89680	+	318	71893429	-	MHJ_0070	-	hypothetical protein
71	 37.07	+1	89995..92082	-	695	71893430	fusA	MHJ_0071	-	elongation factor G
72	 38.00	+2	92092..92562	-	156	71893431	rpsG	MHJ_0072	-	30S ribosomal protein S7
73	 37.38	+1	92614..93033	-	139	71893432	rpsL	MHJ_0073	-	30S ribosomal protein S12
74	 25.98	0	93164..93544	-	126	71893433	-	MHJ_0074	-	hypothetical protein
75	 24.19	-1	93548..94039	-	163	71893434	-	MHJ_0075	-	hypothetical protein
76	 26.09	0	94051..94533	-	160	71893435	-	MHJ_0076	-	hypothetical protein
77	 28.14	0	94816..96162	+	448	71893436	-	MHJ_0077	-	amino acid permease
78	 33.12	0	96377..97759	+	460	71893437	nox	MHJ_0078	-	NADH oxidase
79	 32.48	0	97947..99230	-	427	71893438	deoA	MHJ_0079	-	thymidine phosphorylase
80	 32.62	0	99235..99933	-	232	71893439	deoD	MHJ_0080	-	purine-nucleoside phosphorylase
81	 21.44	-1	100022..100492	-	156	71893440	-	MHJ_0081	-	hypothetical protein
82	 34.45	+1	100649..103600	-	983	161611224	secA	MHJ_0082	-	preprotein translocase subunit SecA
83	 26.50	0	104867..105685	+	272	71893442	rbgA	MHJ_0083	-	ribosomal biogenesis GTPase
84	 25.26	0	105969..107405	-	478	71893443	-	MHJ_0084	-	hypothetical protein
85	 28.24	0	107443..109581	-	712	71893444	-	MHJ_0085	-	putative subtilisin-like serine protease
86	 29.71	0	109801..110076	+	91	71893445	-	MHJ_0086	-	hypothetical protein
87	 28.86	0	110173..111066	+	297	71893446	-	MHJ_0087	-	hypothetical protein
88	 33.01	0	111446..114259	-	937	71893447	uvrA	MHJ_0088	-	excinuclease ABC subunit A
89	 29.85	0	114282..116720	-	812	71893448	-	MHJ_0089	-	hypothetical protein
90	 26.67	0	116928..117287	-	119	71893449	-	MHJ_0090	-	hypothetical protein
91	 26.64	0	117398..118981	+	527	71893450	-	MHJ_0091	-	hypothetical protein
92	 21.77	-1	119004..119591	-	195	71893451	-	MHJ_0092	-	hypothetical protein
93	 30.10	0	119960..120454	+	164	71893452	tpx	MHJ_0093	-	thiol peroxidase
94	 30.03	0	121028..121966	+	312	71893453	lgt	MHJ_0094	-	prolipoprotein diacylglyceryl transferase
95	 35.40	+1	122125..123042	+	305	71893454	trxB	MHJ_0095	-	thioredoxin reductase
96	 28.88	0	123067..126501	+	1144	71893455	-	MHJ_0096	-	putative outer membrane protein - P95
97	 28.09	0	126600..129440	+	946	71893456	-	MHJ_0097	-	hypothetical protein
98	 29.76	0	129445..131628	-	727	71893457	clpB	MHJ_0098	-	ATP-dependent protease binding protein
99	 31.14	0	131706..132434	+	242	71893458	tpiA	MHJ_0099	-	triosephosphate isomerase
100	 25.47	0	132553..132819	+	88	71893459	rpsO	MHJ_0100	-	30S ribosomal protein S15
29.24	MEAN

4.17	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.