IslandPath Analysis: Rickettsia conorii str. Malish 7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.03   STD DEV: 4.13
Rickettsia conorii str. Malish 7, complete genome - 1..1268755
1374 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.71	0	1..822	+	273	15891924	-	RC0001	-	hypothetical protein
2	 29.56	0	1039..1356	+	105	15891925	trxA	RC0002	-	thioredoxin
3	 29.60	0	1367..2116	+	249	15891926	rfbE	RC0003	-	O-antigen export system ATP-binding protein RfbE
4	 29.09	0	2117..2893	+	258	15891927	rfbA	RC0004	-	O-antigen export system permease protein RfbA
5	 32.72	0	2890..5991	+	1033	15891928	-	RC0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 32.51	0	6035..6277	-	80	15891929	-	RC0006	-	hypothetical protein
7	 29.08	0	6299..6580	-	93	15891930	-	RC0007	-	hypothetical protein
8	 36.98	+1	6611..7405	-	264	15891931	lpxA	RC0008	-	UDP-N-acetylglucosamine acyltransferase
9	 35.84	0	7413..7850	-	145	15891932	fabZ	RC0009	-	(3R)-hydroxymyristoyl-ACP dehydratase
10	 35.45	0	8046..9086	-	346	15891933	lpxD	RC0010	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
11	 39.41	+1	9922..10941	+	339	15891934	nifR3	RC0011	-	nifR3-like protein
12	 28.57	0	10959..11882	+	307	15891935	-	RC0012	-	hypothetical protein
13	 29.55	0	12114..12641	-	175	15891936	-	RC0013	-	hypothetical protein
14	 30.92	0	12629..13582	-	317	15891937	znuA	RC0014	-	zinc/manganese ABC transporter substrate binding protein
15	 31.05	0	13579..14889	-	436	15891938	pcnB	RC0015	-	poly(A) polymerase
16	 32.00	0	15379..15603	-	74	15891939	-	RC0016	-	hypothetical protein
17	 32.93	0	15687..16421	-	244	15891940	-	RC0017	-	putative competence locus E protein 3
18	 33.73	0	16433..16681	-	82	15891941	-	RC0018	-	hypothetical protein
19	 33.58	0	17298..23006	+	1902	15891942	sca1	RC0019	-	cell surface antigen
20	 35.96	0	23481..23747	+	88	15891943	-	RC0020	-	hypothetical protein
21	 26.16	-1	24352..24978	+	208	15891944	-	RC0021	-	hypothetical protein
22	 22.40	-2	25436..25618	+	60	15891945	-	RC0022	-	hypothetical protein
23	 30.88	0	25983..26186	+	67	15891946	-	RC0023	-	hypothetical protein
24	 30.10	0	26192..26686	-	164	15891947	atpF	RC0024	-	F0F1 ATP synthase subunit B
25	 25.53	-1	26686..27159	-	157	15891948	atpX	RC0025	-	F0F1 ATP synthase subunit B'
26	 37.78	+1	27178..27402	-	74	161723852	atpE	RC0026	-	F0F1 ATP synthase subunit C
27	 30.45	0	27598..28326	-	242	15891950	atpB	RC0027	-	F0F1 ATP synthase subunit A
28	 29.63	0	28331..28627	-	98	15891951	-	RC0028	-	hypothetical protein
29	 30.94	0	28705..29538	-	277	15891952	-	RC0029	-	hypothetical protein
30	 35.44	0	29703..30224	+	173	15891953	-	RC0030	-	hypothetical protein
31	 31.90	0	30471..32075	-	534	15891954	-	RC0031	-	hypothetical protein
32	 31.30	0	32500..33582	-	360	15891955	recF	RC0032	-	recombination protein F
33	 30.69	0	33606..33908	-	100	15891956	-	RC0033	-	putative coenzyme PQQ synthesis protein c
34	 26.46	-1	34249..34743	-	164	15891957	folA	RC0034	-	dihydrofolate reductase
35	 25.82	-1	34740..35045	-	101	15891958	-	RC0035	-	putative folate synthesis bifunctional protein
36	 26.30	-1	34957..35226	-	89	15891959	-	RC0036	-	putative folate synthesis bifunctional protein
37	 32.86	0	35416..35838	-	140	15891960	-	RC0037	-	putative folate synthesis bifunctional protein
38	 27.08	-1	35819..36058	-	79	15891961	-	RC0038	-	putative folate synthesis bifunctional protein
39	 30.49	0	36524..37192	-	222	15891962	-	RC0039	-	hypothetical protein
40	 27.67	-1	37792..38109	-	105	15891963	-	RC0040	-	hypothetical protein
41	 25.19	-1	38531..38800	-	89	15891964	-	RC0041	-	hypothetical protein
42	 26.17	-1	40072..40671	+	199	15891965	sco2	RC0042	-	sco2 protein precursor
43	 31.58	0	40682..41251	-	189	15891966	-	RC0043	-	hypothetical protein
44	 26.76	-1	41317..41985	+	222	15891967	-	RC0044	-	hypothetical protein
45	 33.33	0	42377..42703	-	108	15891968	-	RC0045	-	hypothetical protein
46	 35.02	0	42551..43378	+	275	15891969	-	RC0046	-	hypothetical protein
47	 37.22	+1	43432..43611	+	59	15891970	-	RC0047	-	hypothetical protein
48	 34.32	0	43865..45187	-	440	15891971	-	RC0048	-	hypothetical protein
49	 29.52	0	45197..45721	-	174	15891972	-	RC0049	-	hypothetical protein
50	 30.60	0	45699..46100	-	133	15891973	-	RC0050	-	hypothetical protein
51	 31.07	0	46024..46377	-	117	15891974	-	RC0051	-	hypothetical protein
52	 31.31	0	46518..46715	-	65	15891975	-	RC0052	-	hypothetical protein
53	 31.96	0	46780..46998	-	72	15891976	-	RC0053	-	hypothetical protein
54	 36.23	+1	47153..47878	-	241	15891977	phbB	RC0054	-	acetoacetyl-CoA reductase
55	 31.25	0	48036..48323	-	95	15891978	-	RC0055	-	hypothetical protein
56	 31.30	0	48478..49068	-	196	15891979	-	RC0056	-	hypothetical protein
57	 30.43	0	49114..49389	-	91	15891980	-	RC0057	-	hypothetical protein
58	 30.30	0	49383..49778	-	131	15891981	-	RC0058	-	hypothetical protein
59	 36.79	+1	49891..52464	+	857	15891982	clpB	RC0059	-	clpB protein
60	 25.61	-1	52705..53196	-	163	15891983	-	RC0060	-	hypothetical protein
61	 34.20	0	53323..54357	-	344	15891984	gcp	RC0061	-	O-sialoglycoprotein endopeptidase
62	 31.32	0	54469..55662	-	397	15891985	aco1	RC0062	-	acyl-CoA desaturase 1
63	 29.03	0	55790..56161	-	123	15891986	-	RC0063	-	putative transcriptional regulator
64	 26.78	-1	56594..56959	+	121	161723851	rpsF	RC0064	-	30S ribosomal protein S6
65	 31.94	0	56984..57271	+	95	15891988	rpsR	RC0065	-	30S ribosomal protein S18
66	 30.04	0	57283..57798	+	171	15891989	rplI	RC0066	-	50S ribosomal protein L9
67	 30.69	0	58097..59533	+	478	15891990	mesJ	RC0067	-	cell cycle protein MesJ
68	 37.62	+1	59634..61547	+	637	15891991	ftsH	RC0068	-	cell division protein ftsH
69	 36.51	+1	62230..63015	+	261	15891992	sdhB	RC0069	-	succinate dehydrogenase iron-sulfur subunit
70	 35.26	0	63304..63459	+	51	15891993	-	RC0070	-	hypothetical protein
71	 33.42	0	63599..64819	-	406	15891994	-	RC0071	-	hypothetical protein
72	 31.41	0	64798..65577	-	259	15891995	lgt	RC0072	-	prolipoprotein diacylglyceryl transferase
73	 28.01	0	65822..66985	+	387	15891996	-	RC0073	-	hypothetical protein
74	 30.42	0	67177..68859	+	560	15891997	yidC	RC0074	-	putative inner membrane protein translocase component YidC
75	 29.67	0	68863..69408	+	181	15891998	pgsA	RC0075	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
76	 29.41	0	69422..69982	+	186	15891999	-	RC0076	-	hypothetical protein
77	 30.71	0	70152..70571	-	139	15892000	-	RC0077	-	hypothetical protein
78	 29.30	0	70755..71027	+	90	15892001	-	RC0078	-	putative BioC
79	 33.10	0	71594..72442	+	282	15892002	-	RC0079	-	hypothetical protein
80	 30.37	0	72659..73333	-	224	15892003	def3	RC0080	-	polypeptide deformylase
81	 31.80	0	73532..75028	+	498	15892004	tlc1	RC0081	-	ADP,ATP carrier protein
82	 35.03	0	75225..76520	+	431	15892005	glpT	RC0082	-	glycerol-3-phosphate transporter
83	 32.62	0	76545..76967	+	140	15892006	ndk	RC0083	-	nucleoside diphosphate kinase
84	 32.80	0	76971..78839	+	622	15892007	gidA	RC0084	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
85	 25.39	-1	78820..79398	+	192	15892008	gidB	RC0085	-	glucose-inhibited division protein B
86	 28.26	0	79395..80162	+	255	15892009	soj	RC0086	-	soj protein
87	 27.76	-1	80149..81009	+	286	15892010	spo0J	RC0087	-	stage 0 sporulation protein J
88	 29.80	0	81267..82934	+	555	15892011	abcT1	RC0088	-	putative ABC transporter ATP-binding protein
89	 21.07	-2	82937..83254	+	105	15892012	-	RC0089	-	hypothetical protein
90	 35.39	0	83290..84114	+	274	15892013	kdsA	RC0090	-	2-dehydro-3-deoxyphosphooctonate aldolase
91	 30.56	0	84596..85135	+	179	15892014	-	RC0091	-	hypothetical protein
92	 29.22	0	85273..85491	+	72	15892015	-	RC0092	-	putative cation efflux system protein
93	 34.53	0	85658..85990	-	110	15892016	hesB1	RC0093	-	hesB protein
94	 33.25	0	86219..87373	+	384	15892017	dgtP	RC0094	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
95	 33.28	0	87487..89217	+	576	15892018	argS	RC0095	-	arginyl-tRNA synthetase
96	 29.19	0	89390..90064	+	224	15892019	-	RC0096	-	hypothetical protein
97	 35.72	0	90242..92458	+	738	15892020	parC	RC0097	-	DNA topoisomerase IV subunit A
98	 35.38	0	93159..94475	-	438	15892021	-	RC0098	-	hypothetical protein
99	 33.51	0	94755..95327	+	190	15892022	dcd	RC0099	-	deoxycytidine triphosphate deaminase
100	 32.24	0	95373..95831	+	152	15892023	secB	RC0100	-	preprotein translocase subunit SecB
32.03	MEAN

4.13	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.