IslandPath Analysis: Methanopyrus kandleri AV19



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.82   STD DEV: 4.58
Methanopyrus kandleri AV19, complete genome - 1..1694969
1687 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.32	0	748..1806	-	352	20093441	RCL1	MK0001	-	RNA 3'-terminal-phosphate cyclase
2	 59.88	0	1888..2403	-	171	20093442	IbpA	MK0002	-	molecular chaperone (small heat shock protein)
3	 61.85	0	2357..3415	-	352	20093443	-	MK0003	-	GTPase
4	 61.95	0	3490..3807	+	105	20093444	rpl12p	MK0004	-	50S ribosomal protein L12P
5	 60.01	0	3811..5343	-	510	20093445	-	MK0005	-	replication factor C large subunit
6	 60.90	0	5349..7256	-	635	20093446	-	MK0006	-	replication factor C (ATPase involved in DNA replication) intein containing
7	 60.31	0	7315..8682	-	455	20093447	TIP49	MK0007	-	DNA helicase TIP49, TBP-interacting protein
8	 55.19	-1	8796..9161	+	121	20093448	DsrE	MK0008	-	hypothetical protein
9	 59.20	0	9299..10450	+	383	20093449	-	MK0009	-	hypothetical protein
10	 61.04	0	10400..11074	-	224	20093450	-	MK0010	-	ThiF/HesA family dinucleotide-utilizing protein
11	 59.86	0	11167..12018	+	283	20093451	Mtd	MK0011	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
12	 60.29	0	11999..12547	-	182	20093452	-	MK0012	-	hypothetical protein
13	 61.47	0	12672..13748	+	358	20093453	Hmd	MK0013	-	H(2)-dependent methylenetetrahydromethanopterin dehydrogenase
14	 59.68	0	13791..14549	+	252	20093454	-	MK0014	-	hypothetical protein
15	 61.02	0	14518..15279	+	253	20093455	-	MK0015	-	hypothetical protein
16	 60.60	0	15236..16306	+	356	20093456	-	MK0016	-	biotin synthase
17	 63.74	0	16252..17787	+	511	20093457	-	MK0017	-	hypothetical protein
18	 63.35	0	17781..18263	+	160	20093458	-	MK0018	-	hypothetical protein
19	 60.41	0	18347..19369	+	340	20093459	-	MK0019	-	protease related to collagenase
20	 59.72	0	19326..19685	+	119	20093460	-	MK0020	-	metal-binding protein
21	 59.92	0	20108..20878	-	256	20093461	Pnp	MK0021	-	purine nucleoside phosphorylase
22	 59.97	0	20875..21456	-	193	20093462	Cmk	MK0022	-	cytidylate kinase
23	 62.28	0	21460..21801	-	113	20093463	rpl34e	MK0023	-	50S ribosomal protein L34e
24	 56.05	-1	21809..22345	-	178	20093464	-	MK0024	-	hypothetical protein
25	 59.55	0	22359..22934	-	191	20093465	AdkA	MK0025	-	adenylate kinase
26	 57.95	0	22954..24330	-	458	20093466	SecY	MK0026	-	preprotein translocase subunit SecY
27	 61.72	0	24397..24861	-	154	20093467	RplO	MK0027	-	ribosomal protein L15
28	 61.78	0	24876..25325	-	149	20093468	rpl30p	MK0028	-	50S ribosomal protein L30P
29	 61.67	0	25473..26153	-	226	20093469	rps5p	MK0029	-	30S ribosomal protein S5P
30	 61.33	0	26170..26769	-	199	161485665	rpl18p	MK0030	-	50S ribosomal protein L18P
31	 61.56	0	26782..27231	-	149	20093471	rpl19e	MK0031	-	50S ribosomal protein L19e
32	 56.77	0	27295..27900	-	201	20093472	-	MK0032	-	C4-type Zn-finger-containing protein
33	 54.37	-1	27917..28900	-	327	20093473	-	MK0033	-	hypothetical protein
34	 51.15	-2	28904..29251	-	115	20093474	-	MK0034	-	hypothetical protein
35	 61.36	0	29245..30336	-	363	20093475	-	MK0035	-	hypothetical protein
36	 62.27	0	30390..30980	-	196	20093476	-	MK0036	-	small, Ras-like GTPase
37	 58.20	0	31183..31749	+	188	20093477	-	MK0037	-	HAD superfamily hydrolase
38	 55.84	-1	31721..32782	+	353	20093478	-	MK0038	-	RNA-binding protein
39	 59.82	0	33253..34011	-	252	20093479	-	MK0039	-	hypothetical protein
40	 62.14	0	34081..35229	+	382	20093480	-	MK0040	-	hypothetical protein
41	 59.31	0	35263..37083	+	606	20093481	-	MK0041	-	hypothetical protein
42	 61.53	0	37451..38404	-	317	20093482	-	MK0042	-	hypothetical protein
43	 56.18	-1	38495..39829	-	444	20093483	-	MK0043	-	tRNA/rRNA cytosine-C5-methylase
44	 61.01	0	40642..41649	-	335	20093484	-	MK0044	-	hypothetical protein
45	 61.50	0	41815..42918	+	367	20093485	-	MK0045	-	GTPase
46	 60.62	0	43093..43638	+	181	20093486	-	MK0046	-	SAM-dependent methyltransferase
47	 59.93	0	43671..44753	-	360	20093487	-	MK0047	-	pyruvate-formate lyase-activating enzyme
48	 59.97	0	44786..45367	+	193	20093488	-	MK0048	-	hypothetical protein
49	 60.45	0	45367..49032	+	1221	20093489	-	MK0049	-	Reverse gyrase
50	 58.41	0	49029..49949	+	306	20093490	-	MK0050	-	hypothetical protein
51	 57.73	0	49918..50835	-	305	20093491	-	MK0051	-	ATPase
52	 52.92	-1	50862..51494	+	210	20093492	GlpG	MK0052	-	membrane serine protease
53	 62.21	0	51991..53284	+	431	20093493	AmtB	MK0053	-	ammonia permease
54	 62.43	0	53306..53659	+	117	20093494	-	MK0054	-	nitrogen regulatory protein PII
55	 58.39	0	53735..54652	-	305	20093495	-	MK0055	-	tRNA-modifying enzyme
56	 62.77	0	55284..55847	-	187	20093496	-	MK0056	-	hypothetical protein
57	 60.44	0	55840..56433	-	197	20093497	-	MK0057	-	hypothetical protein
58	 53.69	-1	56430..56768	-	112	20093498	RPB11	MK0058	-	DNA-directed RNA polymerase, subunit L
59	 60.79	0	56784..57464	-	226	20093499	-	MK0059	-	hypothetical protein
60	 60.41	0	57457..58047	-	196	20093500	-	MK0060	-	exosome complex RNA-binding protein Csl4
61	 63.05	0	58044..59066	-	340	20093501	RecJ	MK0061	-	single-stranded DNA-specific exonuclease
62	 60.49	0	59083..59697	-	204	20093502	-	MK0062	-	RNA methylase
63	 58.20	0	59694..59882	-	62	20093503	-	MK0063	-	Zn-ribbon containing protein
64	 58.55	0	59908..60720	+	270	20093504	-	MK0064	-	hypothetical protein
65	 58.20	0	60717..61094	-	125	20093505	-	MK0065	-	hypothetical protein
66	 54.19	-1	61097..61705	-	202	20093506	TolQ	MK0066	-	biopolymer transport protein
67	 58.35	0	61681..62895	-	404	20093507	-	MK0067	-	hypothetical protein
68	 55.77	-1	62910..63524	-	204	20093508	-	MK0068	-	hypothetical protein
69	 55.43	-1	63592..63867	-	91	20093509	-	MK0069	-	hypothetical protein
70	 58.56	0	63864..65960	-	698	20093510	-	MK0070	-	superfamily I DNA/RNA helicase
71	 57.74	0	66184..66945	+	253	20093511	-	MK0071	-	PP family ATPase
72	 57.01	0	66957..68126	-	389	20093512	-	MK0072	-	hypothetical protein
73	 59.50	0	68133..69011	-	292	20093513	NadA	MK0073	-	quinolinate synthetase
74	 58.51	0	69027..69896	-	289	20093514	-	MK0074	-	metal-dependent hydrolase
75	 61.65	0	69998..70933	+	311	20093515	-	MK0075	-	hypothetical protein
76	 60.39	0	70930..71757	+	275	20093516	-	MK0076	-	hypothetical protein
77	 59.15	0	71931..73088	+	385	20093517	-	MK0077	-	GTPase or GTP-binding protein
78	 61.56	0	73121..74119	+	332	20093518	-	MK0078	-	hypothetical protein
79	 56.46	0	74116..74928	+	270	20093519	TyrA_1	MK0079	-	prephenate dehydratase
80	 57.61	0	74941..75492	+	183	20093520	PorG_1	MK0080	-	pyruvate ferredoxin oxidoreductase subunit gamma
81	 51.85	-1	75485..75754	+	89	20093521	PorD	MK0081	-	pyruvate:ferredoxin oxidoreductase, delta subunit
82	 58.16	0	75767..76918	+	383	20093522	PorA_1	MK0082	-	pyruvate:ferredoxin oxidoreductase, alpha subunit
83	 60.49	0	76931..77821	+	296	20093523	PorB_1	MK0083	-	pyruvate ferredoxin oxidoreductase subunit beta
84	 62.31	0	77794..78321	+	175	20093524	-	MK0084	-	Fe-S-cluster-containing hydrogenase component
85	 62.72	0	78242..79153	+	303	20093525	TtdA	MK0085	-	fumarate hydratase class I
86	 63.30	0	79158..79691	+	177	20093526	FumA	MK0086	-	fumarate hydratase class I
87	 61.47	0	79695..80291	+	198	20093527	-	MK0087	-	IMP cyclohydrolase
88	 61.06	0	80293..82308	-	671	20093528	-	MK0088	-	RNA-binding protein  snRNP
89	 58.21	0	82341..83522	-	393	20093529	-	MK0089	-	CBS-domain-containing protein
90	 57.97	0	83620..83895	+	91	20093530	-	MK0090	-	hypothetical protein
91	 60.72	0	83902..85701	+	599	20093531	-	MK0091	-	putative ATPase RIL
92	 60.33	0	86099..86650	-	183	20093532	-	MK0092	-	phosphoesterase
93	 62.74	0	86682..87470	-	262	20093533	-	MK0093	-	hypothetical protein
94	 61.85	0	87467..88255	-	262	20093534	-	MK0094	-	dinucleotide-utilizing protein
95	 61.32	0	88185..88820	-	211	20093535	-	MK0095	-	hypothetical protein
96	 58.33	0	88832..89203	-	123	20093536	-	MK0096	-	hypothetical protein
97	 62.53	0	89216..90763	+	515	20093537	-	MK0097	-	carbamoyl transferase
98	 63.98	0	90768..91475	+	235	20093538	RibD	MK0098	-	pyrimidine reductase
99	 60.22	0	91472..91828	+	118	20093539	-	MK0099	-	Zn-ribbon-containing protein
100	 61.84	0	91983..93164	+	393	20093540	-	MK0100	-	hypothetical protein
60.82	MEAN

4.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.