IslandPath Analysis: Rhodopirellula baltica SH 1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.91   STD DEV: 2.96
Rhodopirellula baltica SH 1, complete genome - 1..7145576
7325 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.22	0	3..182	-	59	32470667	-	RB2	-	signal peptide
2	 48.65	-2	39..260	+	73	32470668	-	RB3	-	signal peptide
3	 53.41	0	399..1514	-	371	32470669	-	RB5	-	signal peptide
4	 55.35	0	1548..1706	+	52	32470670	-	RB7	-	hypothetical protein
5	 57.29	0	1733..5263	-	1176	32470671	-	RB8	-	helicase
6	 55.98	0	5458..5850	-	130	32470672	-	RB13	-	hypothetical protein
7	 57.77	0	5836..7386	+	516	32470673	-	RB14	-	hypothetical protein
8	 59.19	+1	7575..8069	-	164	32470674	-	RB16	-	hypothetical protein
9	 59.60	+1	7757..8251	-	164	32470675	-	RB17	-	hypothetical protein
10	 58.99	+1	7939..8433	-	164	32470676	-	RB18	-	hypothetical protein
11	 57.92	+1	8303..8542	-	79	32470677	-	RB19	-	hypothetical protein
12	 54.54	0	8570..10894	-	774	32470678	-	RB20	-	myosin heavy chain
13	 57.36	0	11131..13935	+	934	32470679	-	RB24	-	L-sorbosone dehydrogenase
14	 56.15	0	14053..14556	+	167	32470680	-	RB27	-	hypothetical protein
15	 56.84	0	14498..15148	-	216	32470681	-	RB29	-	hypothetical protein
16	 53.57	0	15460..15627	-	55	32470682	-	RB33	-	hypothetical protein
17	 55.05	0	15692..16483	-	263	32470683	-	RB34	-	hypothetical protein
18	 50.63	-1	16591..17700	-	369	32470684	-	RB35	-	hypothetical protein
19	 51.70	-1	17693..17839	-	48	32470685	-	RB36	-	hypothetical protein
20	 51.76	-1	17846..18328	-	160	32470686	-	RB37	-	signal peptide
21	 51.31	-1	18331..18636	+	101	32470687	-	RB38	-	hypothetical protein
22	 50.80	-1	18668..19417	-	249	32470688	-	RB39	-	transposase
23	 51.95	0	19461..19922	-	153	32470689	-	RB40	-	hypothetical protein
24	 52.61	0	20053..20550	-	165	32470690	-	RB41	-	hypothetical protein
25	 56.97	0	20627..20791	-	54	32470691	-	RB43	-	hypothetical protein
26	 56.44	0	20825..21127	-	100	32470692	-	RB44	-	hypothetical protein
27	 54.21	0	21151..21471	-	106	32470693	-	RB45	-	hypothetical protein
28	 55.31	0	21455..22282	-	275	32470694	-	RB46	-	hypothetical protein
29	 52.59	0	22495..23190	-	231	32470695	-	RB50	-	hypothetical protein
30	 55.75	0	23323..23670	-	115	32470696	-	RB52	-	hypothetical protein
31	 55.67	0	23873..24472	-	199	32470697	-	RB54	-	signal peptide
32	 50.37	-1	24564..24833	-	89	32470698	-	RB56	-	hypothetical protein
33	 47.41	-2	24939..25208	-	89	32470699	-	RB59	-	hypothetical protein
34	 49.74	-1	25165..25359	+	64	32470700	-	RB60	-	hypothetical protein
35	 48.59	-2	25378..25554	+	58	32470701	-	RB61	-	hypothetical protein
36	 46.46	-2	25588..25983	+	131	32470702	-	RB62	-	hypothetical protein
37	 52.16	0	26082..26336	+	84	32470703	-	RB66	-	hypothetical protein
38	 53.29	0	26435..27682	+	415	32470704	-	RB68	-	signal peptide
39	 57.40	0	27689..28141	+	150	32470705	-	RB71	-	signal peptide
40	 56.61	0	28138..28674	+	178	32470706	-	RB72	-	signal peptide
41	 50.84	-1	28727..29023	+	98	32470707	-	RB73	-	hypothetical protein
42	 53.58	0	29164..29736	+	190	32470708	-	RB76	-	signal peptide
43	 53.52	0	29168..29692	+	174	32470709	-	RB77	-	hypothetical protein
44	 51.76	-1	29767..30276	+	169	32470710	-	RB80	-	hypothetical protein
45	 54.32	0	30279..30440	+	53	32470711	-	RB81	-	hypothetical protein
46	 53.89	0	30494..31135	+	213	32470712	-	RB82	-	putative cysteine protease
47	 50.82	-1	31291..31473	-	60	32470713	-	RB84	-	hypothetical protein
48	 51.82	-1	31507..32739	+	410	32470714	-	RB85	-	hypothetical protein
49	 56.72	0	32765..34051	+	428	32470715	-	RB87	-	signal peptide
50	 53.57	0	34254..35666	+	470	32470716	phoD	RB88	-	alkaline phosphatase D
51	 53.25	0	35663..36370	+	235	32470717	-	RB89	-	hypothetical protein
52	 53.55	0	36400..38457	-	685	32470718	phoD	RB92	-	alkaline phosphatase D
53	 53.81	0	38470..39441	-	323	32470719	-	RB93	-	signal peptide
54	 52.11	0	39617..40090	-	157	32470720	-	RB95	-	hypothetical protein
55	 54.21	0	40275..40571	-	98	32470721	-	RB98	-	50S ribosomal protein L37ae
56	 52.96	0	40726..41097	-	123	32470722	-	RB100	-	hypothetical protein
57	 53.33	0	41251..44415	-	1054	32470723	-	RB101	-	acylaminoacyl-peptidase
58	 51.40	-1	44265..44834	-	189	32470724	-	RB104	-	hypothetical protein
59	 53.99	0	44735..45886	+	383	32470725	-	RB105	-	cysteine proteinase
60	 56.30	0	45883..47262	+	459	32470726	-	RB107	-	hypothetical protein
61	 55.69	0	47345..49093	-	582	32470727	-	RB110	-	iduronate-2-sulfatase
62	 54.73	0	49329..50216	-	295	32470728	-	RB112	-	hypothetical protein
63	 55.66	0	50213..51139	-	308	32470729	-	RB115	-	signal peptide
64	 55.90	0	51136..51525	-	129	32470730	-	RB117	-	hypothetical protein
65	 54.51	0	51522..52031	-	169	32470731	-	RB118	-	hypothetical protein
66	 53.12	0	52007..52390	-	127	32470732	-	RB120	-	hypothetical protein
67	 53.60	0	52395..53687	-	430	32470733	-	RB123	-	hypothetical protein
68	 54.25	0	53678..54571	-	297	32470734	-	RB125	-	hypothetical protein
69	 56.70	0	54487..55539	-	350	32470735	-	RB127	-	hypothetical protein
70	 58.50	+1	55536..56747	-	403	32470736	gspE	RB128	-	general secretion pathway protein E
71	 50.88	-1	56777..56890	-	37	32470737	-	RB129	-	hypothetical protein
72	 57.17	0	56878..58119	+	413	32470738	-	RB130	-	signal peptide
73	 56.31	0	58394..58615	-	73	32470739	-	RB132	-	hypothetical protein
74	 56.10	0	58617..59468	-	283	32470740	-	RB133	-	metalloprotease
75	 51.52	-1	59440..59604	-	54	32470741	-	RB135	-	hypothetical protein
76	 58.31	+1	59847..60875	+	342	32470742	-	RB136	-	putative aminomethyltransferase
77	 55.81	0	60872..61516	+	214	32470743	-	RB138	-	hypothetical protein
78	 57.79	0	61578..64541	+	987	32470744	-	RB140	-	serine/threonine protein kinase
79	 56.29	0	64669..66924	-	751	32470745	-	RB142	-	hypothetical protein
80	 57.98	+1	66870..68273	-	467	32470746	-	RB144	-	membrane-fusion protein
81	 56.42	0	68277..69164	-	295	32470747	-	RB146	-	cation efflux system
82	 56.34	0	69161..71212	-	683	32470748	secA	RB148	-	preprotein translocase subunit SecA
83	 56.02	0	71197..73215	-	672	32470749	-	RB149	-	outer membrane channel protein
84	 56.36	0	73100..73390	+	96	32470750	-	RB150	-	hypothetical protein
85	 55.56	0	73233..73403	+	56	32470751	-	RB152	-	hypothetical protein
86	 54.84	0	73499..81046	+	2515	32470752	-	RB154	-	lipoprotein receptor-related protein
87	 54.39	0	81043..84024	+	993	32470753	-	RB159	-	sensory transduction histidine kinase
88	 53.49	0	84027..84284	-	85	32470754	-	RB160	-	hypothetical protein
89	 54.42	0	84262..85518	+	418	32470755	-	RB161	-	response regulator
90	 58.04	+1	85677..86603	-	308	32470756	-	RB162	-	SAM dependent methyltransferase
91	 56.09	0	87060..87560	+	166	32470757	-	RB164	-	hypothetical protein
92	 53.42	0	87557..88726	-	389	32470758	-	RB165	-	transposase
93	 55.15	0	88683..88847	+	54	32470759	-	RB166	-	hypothetical protein
94	 56.59	0	88901..89317	+	138	32470760	-	RB168	-	transposase
95	 48.80	-2	89333..89623	+	96	32470761	-	RB170	-	transposase
96	 53.58	0	89626..90504	+	292	32470762	-	RB171	-	putative transposase
97	 54.64	0	90494..91441	+	315	32470763	-	RB172	-	transposase
98	 50.00	-1	91448..91585	+	45	32470764	-	RB174	-	hypothetical protein
99	 51.20	-1	91582..91956	+	124	32470765	-	RB175	-	hypothetical protein
100	 53.99	0	92068..92493	-	141	32470766	-	RB177	-	signal peptide
54.91	MEAN

2.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.