IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.37   STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.00	-2	247..381	+	44	83642914	-	HCH_00001	-	hypothetical protein
2	 50.50	0	378..1781	+	467	83642915	dnaA	HCH_00002	-	chromosomal replication initiation protein
3	 49.09	0	1884..2987	+	367	83642916	dnaN	HCH_00003	-	DNA polymerase III, beta subunit
4	 56.25	0	3008..3103	+	31	83642917	-	HCH_00004	-	hypothetical protein
5	 49.30	0	3128..4405	+	425	83642918	aarF	HCH_00005	-	ABC1 family protein kinase
6	 48.59	0	4479..5081	+	200	83642919	-	HCH_00006	-	multidrug ABC transporter
7	 47.07	-1	5102..6229	+	375	83642920	recF	HCH_00007	-	recombinational DNA repair ATPase (RecF pathway)
8	 50.66	0	6253..8670	+	805	83642921	gyrB	HCH_00008	-	DNA gyrase subunit B
9	 46.02	-1	8742..9269	-	175	83642922	-	HCH_00009	-	hypothetical protein
10	 57.59	0	9583..10563	-	326	83642923	-	HCH_00010	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
11	 56.29	0	10560..12458	-	632	83642924	-	HCH_00011	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
12	 54.32	0	12455..13402	-	315	83642925	-	HCH_00012	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
13	 53.54	0	13973..15541	-	522	83642926	-	HCH_00013	-	ABC-type dipeptide transport system, periplasmic component
14	 49.12	0	15881..16051	-	56	83642927	-	HCH_00014	-	hypothetical protein
15	 49.33	0	16440..16814	+	124	83642928	-	HCH_00015	-	ArsR family transcriptional regulator
16	 58.75	0	16858..18234	-	458	83642929	fumC	HCH_00016	-	fumarate hydratase
17	 61.87	+1	18254..18628	-	124	83642930	-	HCH_00017	-	hypothetical protein
18	 57.93	0	18710..20266	-	518	83642931	-	HCH_00018	-	Na+/phosphate symporter
19	 55.95	0	20317..22452	-	711	83642932	-	HCH_00019	-	glucose/sorbosone dehydrogenase
20	 59.79	+1	22888..23454	-	188	83642933	-	HCH_00020	-	histidinol phosphatase
21	 57.86	0	23474..25552	-	692	83642934	glyS	HCH_00021	-	glycyl-tRNA synthetase, beta subunit
22	 56.01	0	25557..26504	-	315	83642935	glyQ	HCH_00022	-	glycyl-tRNA synthetase subunit alpha
23	 57.53	0	26735..27631	+	298	83642936	-	HCH_00023	-	lauroyl/myristoyl acyltransferase
24	 55.48	0	27655..29334	-	559	83642937	-	HCH_00024	-	hypothetical protein
25	 57.89	0	29603..30559	+	318	83642938	-	HCH_00026	-	alpha/beta superfamily hydrolase/acyltransferase
26	 56.87	0	30534..31982	-	482	83642939	trkH	HCH_00025	-	Trk-type K+ transport system, membrane components
27	 55.68	0	32016..33389	-	457	83642940	trkA	HCH_00027	-	potassium transporter peripheral membrane component
28	 56.99	0	33391..34734	-	447	83642941	sun	HCH_00028	-	sun protein
29	 57.89	0	34736..35692	-	318	83642942	fmt	HCH_00029	-	methionyl-tRNA formyltransferase
30	 52.07	0	35761..36267	-	168	83642943	def	HCH_00030	-	peptide deformylase
31	 49.27	0	36431..37459	+	342	83642944	-	HCH_00031	-	LysM domain-containing protein
32	 56.24	0	37519..38688	+	389	83642945	-	HCH_00032	-	Rossmann fold nucleotide-binding protein involved in DNA uptake
33	 57.30	0	38777..39331	+	184	83642946	-	HCH_00033	-	putative translation factor (SUA5)
34	 57.06	0	39342..40247	+	301	83642947	hemF	HCH_00036	-	coproporphyrinogen III oxidase
35	 55.60	0	39621..40334	-	237	83642948	-	HCH_00034	-	ferric pseudobactins receptor protein RF5-like protein
36	 60.15	+1	40296..41108	+	270	83642949	aroE	HCH_00037	-	shikimate 5-dehydrogenase
37	 55.91	0	41254..42006	+	250	83642950	motA	HCH_00038	-	flagellar motor component
38	 57.00	0	42003..42830	+	275	83642951	motB	HCH_00039	-	flagellar motor protein
39	 55.66	0	42915..43223	+	102	83642952	-	HCH_00040	-	hypothetical protein
40	 53.11	0	43300..43749	-	149	83642953	-	HCH_00041	-	molecular chaperone (small heat shock protein)
41	 60.59	+1	43980..44522	-	180	83642954	-	HCH_00042	-	carbonic anhydrase
42	 55.70	0	44733..46766	+	677	83642955	prlC	HCH_00043	-	oligopeptidase A
43	 57.08	0	46836..47075	+	79	83642956	-	HCH_00044	-	nucleic acid-binding protein
44	 53.24	0	47113..47760	-	215	83642957	-	HCH_00045	-	hypothetical protein
45	 58.88	0	47854..49188	-	444	83642958	-	HCH_00046	-	Na+-driven multidrug efflux pump
46	 53.65	0	49436..50557	+	373	83642959	coxB	HCH_00047	-	cytochrome-c oxidase, subunit II
47	 55.79	0	50597..52177	+	526	83642960	coxA	HCH_00048	-	cytochrome-c oxidase, subunit I
48	 54.92	0	52234..53118	+	294	83642961	coxC	HCH_00049	-	cytochrome-c oxidase, subnunit III
49	 50.22	0	53196..53426	-	76	83642962	-	HCH_00050	-	hypothetical protein
50	 61.38	+1	53532..54269	+	245	83642963	-	HCH_00051	-	hypothetical protein
51	 57.64	0	54262..54870	+	202	83642964	-	HCH_00052	-	hypothetical protein
52	 61.98	+1	54965..56053	+	362	83642965	-	HCH_00053	-	uncharacterized protein required for cytochrome oxidase assembly
53	 61.00	+1	56050..56949	+	299	83642966	cyoE	HCH_00054	-	protoheme IX farnesyltransferase
54	 60.19	+1	57068..58333	+	421	83642967	-	HCH_00055	-	Beta-lactamase class C and other penicillin binding protein
55	 51.54	0	58363..58719	-	118	83642968	-	HCH_00056	-	hypothetical protein
56	 52.50	0	59022..59261	+	79	83642969	-	HCH_00057	-	hypothetical protein
57	 58.86	0	59279..60367	-	362	83642970	-	HCH_00058	-	strictosidine synthase family protein
58	 59.32	+1	60409..62178	-	589	83642971	-	HCH_00059	-	hypothetical protein
59	 59.54	+1	62641..63342	-	233	83642972	-	HCH_00060	-	hypothetical protein
60	 58.58	0	63440..64576	+	378	83642973	-	HCH_00061	-	deacylase
61	 60.03	+1	64758..66233	+	491	83642974	phrB1	HCH_00062	-	deoxyribodipyrimidine photolyase
62	 54.52	0	66301..66687	-	128	83642975	-	HCH_00063	-	hypothetical protein
63	 59.64	+1	66791..67459	-	222	83642976	-	HCH_00064	-	response regulator
64	 60.23	+1	67500..68882	-	460	83642977	-	HCH_00065	-	Signal transduction histidine kinase
65	 58.11	0	69120..70463	+	447	83642978	-	HCH_00067	-	hypothetical protein
66	 60.59	+1	70545..71153	-	202	83642979	-	HCH_00068	-	putative threonine efflux protein
67	 61.50	+1	71280..72266	+	328	83642980	-	HCH_00069	-	transcriptional regulator
68	 56.55	0	72392..73360	+	322	83642981	-	HCH_00070	-	glutathione S-transferase
69	 56.41	0	73616..74863	+	415	83642982	-	HCH_00071	-	ABC-type sugar transport system, periplasmic component
70	 63.46	+1	74875..75903	-	342	83642983	hypE	HCH_00072	-	hydrogenase expression/formation protein HypE
71	 62.08	+1	75904..77016	-	370	83642984	hypD	HCH_00073	-	hydrogenase expression/formation protein HypD
72	 58.33	0	77016..77279	-	87	83642985	hypC	HCH_00074	-	hydrogenase assembly chaperone HypC/HupF
73	 62.93	+1	77270..79627	-	785	83642986	hypF	HCH_00075	-	[NiFe] hydrogenase maturation protein HypF
74	 59.20	+1	79594..80343	-	249	83642987	hypB	HCH_00076	-	hydrogenase accessory protein HypB
75	 55.30	0	80470..81243	-	257	83642988	-	HCH_00077	-	FOG EAL domain-containing protein
76	 63.45	+1	81307..82176	-	289	83642989	-	HCH_00078	-	hypothetical protein
77	 55.93	0	82179..82793	-	204	83642990	-	HCH_00079	-	hypothetical protein
78	 63.59	+1	82805..84007	-	400	83642991	-	HCH_00080	-	glycosyltransferase
79	 56.76	0	83979..84392	-	137	83642992	-	HCH_00081	-	hypothetical protein
80	 55.28	0	84397..85248	-	283	83642993	-	HCH_00082	-	hypothetical protein
81	 61.18	+1	85249..86505	-	418	83642994	-	HCH_00083	-	glycosyltransferase
82	 58.12	0	86696..88321	+	541	83642995	-	HCH_00084	-	methyl-accepting chemotaxis protein
83	 60.07	+1	88420..90813	-	797	83642996	-	HCH_00085	-	secreted endoclucanase precursor
84	 60.89	+1	90925..93159	-	744	83642997	-	HCH_00086	-	cellobiohydrolase A (1,4-beta-cellobiosidase A)
85	 58.22	0	93322..94920	-	532	83642998	-	HCH_00087	-	endoglucanase
86	 41.27	-2	95007..95195	+	62	83642999	-	HCH_00088	-	hypothetical protein
87	 57.40	0	95629..97830	+	733	83643000	-	HCH_00089	-	von Willebrand factor type A (vWA) domain-containing protein
88	 63.30	+1	97827..98450	+	207	83643001	-	HCH_00090	-	sortase (surface protein transpeptidase)
89	 61.77	+1	99187..100575	+	462	83643002	-	HCH_00091	-	group II intron-encoding maturase
90	 37.29	-2	100700..100876	-	58	83643003	-	HCH_00092	-	hypothetical protein
91	 55.53	0	101058..102665	+	535	83643004	-	HCH_00093	-	autotransporter beta-domain-containing protein
92	 54.93	0	102679..107022	+	1447	83643005	-	HCH_00094	-	cell wall surface anchor family protein
93	 54.84	0	107075..107818	-	247	83643006	-	HCH_00095	-	hypothetical protein
94	 55.73	0	107805..108737	-	310	83643007	-	HCH_00096	-	hypothetical protein
95	 54.82	0	108803..109165	-	120	83643008	-	HCH_00097	-	hypothetical protein
96	 51.04	0	109391..110017	-	208	83643009	udk	HCH_00098	-	uridine kinase
97	 38.56	-2	110218..110370	+	50	83643010	-	HCH_00099	-	hypothetical protein
98	 49.63	0	111055..111858	+	267	83643011	-	HCH_00100	-	sulfurtransferase
99	 58.16	0	111986..113302	+	438	83643012	-	HCH_00101	-	sulfite oxidase and related enzyme
100	 57.88	0	113458..113787	+	109	83643013	-	HCH_00102	-	hypothetical protein
53.37	MEAN

5.65	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.